FastQCFastQC Report
Wed 25 May 2016
SRR1779867_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779867_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47037
Sequences flagged as poor quality0
Sequence length76
%GC50

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CATGACG150.00221161570.0000111
ACGATAC252.7987971E-670.0000124
CCCGTAT150.00221161570.0000154
CGAGCGC150.00221161570.0000125
GTGAGTT150.00221161570.0000158
GACGATC150.00221161570.0000123
GTAGTCT150.00221161570.0000118
AAGCTGC150.00221161570.0000115
TCGGCGG207.849891E-570.045
CCGTATC750.070.055
CTCGGCG207.849891E-570.044
GTGTAGC207.849891E-570.036
AGCTGCC207.849891E-570.016
GTAAATC207.849891E-570.038
ATCTCGG1250.067.242
CTCGGTG900.066.1111144
GTGGTCG700.065.048
CGTATCA650.064.6153956
CGGTGGT600.064.1666746
GCCGTAT501.2732926E-1163.00000454
Produced by FastQC (version 0.11.5)