##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779867_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 47037 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.797691179284392 23.0 12.0 33.0 12.0 34.0 2 23.372068796904564 23.0 12.0 34.0 12.0 34.0 3 22.88521801985671 23.0 11.0 34.0 11.0 34.0 4 23.167081233922232 23.0 12.0 34.0 12.0 34.0 5 22.576439823968364 23.0 11.0 34.0 11.0 34.0 6 25.414057018942536 27.0 12.0 37.0 11.0 38.0 7 25.589089440227905 27.0 12.0 37.0 11.0 38.0 8 25.116185130854433 26.0 11.0 37.0 11.0 38.0 9 25.84803452601144 28.0 12.0 37.0 11.0 38.0 10-11 24.829676637540658 26.0 11.5 37.0 11.0 38.0 12-13 25.05481854710122 26.0 11.0 37.0 11.0 38.0 14-15 24.25774390373536 26.0 11.0 36.0 11.0 38.0 16-17 24.441971214150563 25.5 11.0 36.5 11.0 38.0 18-19 24.40727512383868 26.0 11.0 37.0 11.0 38.0 20-21 24.407647171375725 24.5 11.0 36.0 11.0 38.0 22-23 24.604449688543063 25.0 11.0 37.0 10.5 38.0 24-25 24.75966792099836 26.0 11.0 37.0 10.0 38.0 26-27 23.97676297382911 23.5 11.0 37.0 10.0 38.0 28-29 24.229478920849544 25.0 11.0 37.0 11.0 38.0 30-31 24.32806088823692 25.5 11.0 37.0 11.0 38.0 32-33 24.562961073197695 26.0 11.0 37.0 11.0 38.0 34-35 24.662978081085104 26.0 11.0 37.0 11.0 38.0 36-37 24.419403873546358 26.0 11.0 37.0 11.0 38.0 38-39 24.324266003359057 26.0 11.0 37.0 11.0 38.0 40-41 24.27637817037651 26.0 11.0 37.0 11.0 38.0 42-43 24.536003571656355 26.0 11.0 37.0 11.0 38.0 44-45 24.693656057996897 26.0 11.0 37.0 11.0 38.0 46-47 24.560845717201353 25.5 11.0 37.0 11.0 38.0 48-49 24.19228479707464 25.5 11.0 37.0 11.0 38.0 50-51 23.88657865084933 23.5 11.0 36.5 11.0 38.0 52-53 24.333227034037034 25.0 11.0 37.0 11.0 38.0 54-55 24.34144396964092 25.0 11.0 37.0 11.0 38.0 56-57 24.228054510279144 24.5 11.0 37.0 11.0 38.0 58-59 24.178912345600274 24.5 11.0 37.0 11.0 38.0 60-61 24.38198652124923 25.0 11.0 37.0 11.0 38.0 62-63 24.149573739821843 24.0 11.0 37.0 11.0 38.0 64-65 24.09499968110211 24.5 11.0 37.0 11.0 38.0 66-67 24.430395220783637 25.0 11.0 37.0 11.0 38.0 68-69 24.1330441992474 24.5 11.0 37.0 11.0 38.0 70-71 24.253002955120436 24.5 11.0 37.0 11.0 38.0 72-73 23.81845143185152 23.5 11.0 37.0 11.0 38.0 74-75 23.731849395157006 23.5 11.0 37.0 11.0 38.0 76 23.472053915003084 24.0 11.0 36.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 47.0 13 517.0 14 1806.0 15 3069.0 16 3937.0 17 4522.0 18 4428.0 19 3816.0 20 2865.0 21 2083.0 22 1339.0 23 950.0 24 708.0 25 545.0 26 483.0 27 422.0 28 398.0 29 434.0 30 476.0 31 520.0 32 689.0 33 865.0 34 1119.0 35 1805.0 36 3101.0 37 6090.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.402853073112656 21.3236388375109 9.464889342432553 45.8086187469439 2 12.058592172119821 21.425686161957607 28.24797499840551 38.26774666751706 3 20.515764185641093 20.11820481748411 32.79333290813614 26.57269808873865 4 20.07781108489062 30.809788039203177 19.92686608414652 29.185534791759675 5 11.010481110615048 27.440100346535708 26.496162595403618 35.05325594744563 6 17.548633995960454 46.56957584777294 11.816732220686722 24.065057935579887 7 16.067783636672903 38.08258207178091 12.80192209559449 33.047712195951696 8 14.599455736031974 42.669444680670125 17.059273747767666 25.671825835530232 9 19.86094573907127 21.574672563361116 14.777172988603503 43.78720870896411 10-11 15.634832893953568 33.17671570711796 21.079598605323582 30.1088527936049 12-13 15.429506872322557 24.107873672573426 25.25804428475758 35.20457517034643 14-15 26.43238301762442 27.875927461360206 18.270723047813423 27.420966473201947 16-17 28.339392393222358 24.660373748325785 16.97068265408083 30.029551204371025 18-19 19.875624534920806 24.430743063675987 21.313915169554587 34.37971723184862 20-21 26.070965410208984 23.474073601632757 18.60769181708017 31.847269171078086 22-23 28.57142857142857 23.06081447386604 17.109053607304965 31.258703347400424 24-25 19.889444031040714 31.573296481343682 16.209205910492187 32.32805357712342 26-27 24.098050470905882 32.0758126581202 18.195250547441375 25.630886323532536 28-29 20.79156346008696 29.668215208308972 21.734508382323238 27.80571294928083 30-31 22.875851732165444 26.756880295089985 22.35816865625631 28.00909931648826 32-33 18.0985181878096 30.19963007844888 23.571868954227522 28.129982779514002 34-35 16.73594352961187 35.68732924404945 20.198369247451282 27.37835797888739 36-37 23.672319387592367 26.310137685396846 21.22587847536016 28.79166445165063 38-39 24.788977951650967 22.7021453022346 25.597984393936173 26.910892352178255 40-41 19.64963379503152 28.86800676070711 22.508052257289553 28.97430718697182 42-43 14.13370467615575 28.16323493457209 25.074144547319634 32.62891584195253 44-45 13.936282169850431 23.978696941671714 29.818966525284097 32.26605436319376 46-47 17.598783871413538 27.251273001732773 25.5248806726977 29.625062454155994 48-49 18.228397095872353 29.232617222795064 23.094830610270748 29.444155071061832 50-51 25.423890973647005 27.981587983288865 18.280198577639815 28.31432246542432 52-53 13.035158035742764 31.659242406523425 22.517302601503282 32.78829695623053 54-55 16.253282444371205 26.43497304940411 22.35676848002892 34.954976026195766 56-57 19.17479082722914 28.95780397826942 19.804169634598825 32.063235559902616 58-59 17.69665011747446 29.20064212283257 20.324676015011217 32.778031744681755 60-61 14.396895433522939 26.790707564722773 21.83828610919143 36.97411089256286 62-63 17.55387575883222 27.793193633783055 20.407403863532465 34.24552674385226 64-65 17.76832704268779 26.681197171867527 19.87666790707565 35.67380787836904 66-67 15.071973804511918 35.22144968212456 16.231847079585805 33.474729433777725 68-69 16.806276043881283 37.48618079768688 15.010842758737988 30.69670039969385 70-71 16.90283078035143 38.287287532023 14.668395820267238 30.14148586735833 72-73 19.73230991665249 32.97329477802347 15.66592957986052 31.62846572546351 74-75 17.26784670174879 31.626003295593474 20.34550576728858 30.76064423536916 76 15.60818999425935 36.572193991452814 16.86900686751855 30.950609146769292 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 0.5 12 0.0 13 3.0 14 4.0 15 3.5 16 4.0 17 3.0 18 3.0 19 11.5 20 17.5 21 15.0 22 26.0 23 44.0 24 55.5 25 60.0 26 82.0 27 107.0 28 152.0 29 194.0 30 208.5 31 249.0 32 337.5 33 400.0 34 457.0 35 599.5 36 793.5 37 902.0 38 966.0 39 1167.0 40 1405.0 41 1599.5 42 1693.0 43 1920.0 44 2317.0 45 2489.5 46 2492.0 47 2564.0 48 2722.0 49 2799.5 50 2791.0 51 2785.5 52 2723.0 53 2619.0 54 2572.0 55 2438.5 56 2159.5 57 1910.0 58 1806.0 59 1676.0 60 1432.5 61 1199.5 62 1080.0 63 1009.0 64 845.0 65 651.5 66 500.5 67 450.0 68 413.5 69 320.5 70 255.0 71 246.0 72 232.0 73 206.0 74 148.0 75 102.0 76 80.5 77 60.0 78 57.0 79 53.0 80 43.5 81 29.0 82 25.5 83 27.0 84 26.0 85 19.0 86 12.0 87 11.0 88 9.0 89 6.0 90 4.0 91 3.5 92 4.0 93 3.5 94 5.0 95 5.0 96 3.0 97 5.0 98 5.0 99 3.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.00425197185194634 7 0.01062992962986585 8 0.00212598592597317 9 0.01062992962986585 10-11 0.00212598592597317 12-13 0.001062992962986585 14-15 0.0 16-17 0.0 18-19 0.00425197185194634 20-21 0.0 22-23 0.001062992962986585 24-25 0.00425197185194634 26-27 0.0 28-29 0.007440950740906095 30-31 0.001062992962986585 32-33 0.0 34-35 0.007440950740906095 36-37 0.020196866296745115 38-39 0.00850394370389268 40-41 0.001062992962986585 42-43 0.001062992962986585 44-45 0.0031889788889597555 46-47 0.005314964814932925 48-49 0.001062992962986585 50-51 0.005314964814932925 52-53 0.013818908518825604 54-55 0.013818908518825604 56-57 0.013818908518825604 58-59 0.011692922592852435 60-61 0.020196866296745115 62-63 0.015944894444798775 64-65 0.020196866296745115 66-67 0.012755915555839022 68-69 0.00212598592597317 70-71 0.001062992962986585 72-73 0.01062992962986585 74-75 0.009566936666879265 76 0.00850394370389268 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 47037.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.87046367753045 #Duplication Level Percentage of deduplicated Percentage of total 1 93.53140998038371 83.121797733699 2 3.2008037892923786 5.689138337904203 3 1.7319745466724081 4.617641431213725 4 0.8803406535572461 3.1294512830325063 5 0.37318788574709344 1.6582690222590728 6 0.14353380221042056 0.7653549333503412 7 0.08133582125257165 0.5059846503816144 8 0.033491220515764794 0.23811042370899504 9 0.011961150184201713 0.09566936666879265 >10 0.011961150184201713 0.17858281778174628 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.00212598592597317 0.0 5 0.0 0.0 0.0 0.01913387333375853 0.0 6 0.0 0.0 0.0 0.01913387333375853 0.0 7 0.0 0.0 0.0 0.01913387333375853 0.0 8 0.0 0.0 0.0 0.01913387333375853 0.0 9 0.0 0.0 0.0 0.01913387333375853 0.0 10 0.0 0.0 0.0 0.0212598592597317 0.0 11 0.0 0.0 0.0 0.0212598592597317 0.0 12 0.0 0.0 0.0 0.0212598592597317 0.0 13 0.0 0.0 0.0 0.0212598592597317 0.0 14 0.0 0.0 0.0 0.0212598592597317 0.0 15 0.0 0.0 0.0 0.0212598592597317 0.0 16 0.0 0.0 0.0 0.0212598592597317 0.0 17 0.0 0.0 0.0 0.0212598592597317 0.0 18 0.0 0.0 0.0 0.0212598592597317 0.0 19 0.0 0.0 0.0 0.03401577481557072 0.0 20 0.0 0.0 0.0 0.03401577481557072 0.0 21 0.0 0.0 0.0 0.03614176074154389 0.0 22 0.0 0.0 0.0 0.06803154963114144 0.0 23 0.0 0.0 0.0 0.07653549333503412 0.0 24 0.0 0.0 0.0 0.09779535259476582 0.0 25 0.0 0.0 0.0 0.10204732444671216 0.0 26 0.0 0.0 0.0 0.10204732444671216 0.0 27 0.0 0.0 0.0 0.12118119778047069 0.0 28 0.0 0.0 0.0 0.14669302889214875 0.0 29 0.0 0.0 0.0 0.17433084592979994 0.0 30 0.0 0.0 0.0 0.19984267704147798 0.0 31 0.0 0.0 0.0 0.22535450815315602 0.0 32 0.0 0.0 0.0 0.24448838148691457 0.0 33 0.0 0.0 0.0 0.2848821140804048 0.0 34 0.0 0.0 0.0 0.32527584667389503 0.0 35 0.0 0.0 0.0 0.40181134000892915 0.0 36 0.0 0.0 0.0 0.5187405659374535 0.0 37 0.0 0.0 0.0 0.7292131726087974 0.0 38 0.0 0.0 0.0 1.0225992303930949 0.0 39 0.0 0.0 0.0 1.2777175415098752 0.0 40 0.0 0.0 0.0 1.5774815570720921 0.0 41 0.0 0.0 0.0 1.9686629674511555 0.0 42 0.0 0.0 0.0 2.272678954865319 0.0 43 0.0 0.0 0.0 2.6319705763547847 0.0 44 0.0 0.0 0.0 2.9678763526585454 0.0 45 0.0 0.0 0.0 3.363309734889555 0.0 46 0.0 0.0 0.0 3.762995088972511 0.0 47 0.0 0.0 0.0 4.090396921572379 0.0 48 0.0 0.0 0.0 4.417798754172248 0.0 49 0.0 0.0 0.0 4.651657206029296 0.0 50 0.0 0.0 0.0 4.976933052703191 0.0 51 0.0 0.0 0.0 5.287326997895274 0.0 52 0.0 0.0 0.0 5.650870591236686 0.0 53 0.0 0.0 0.0 6.020792142356018 0.0 54 0.0 0.0 0.0 6.3524459468078325 0.0 55 0.0 0.0 0.0 6.667091863851861 0.0 56 0.0 0.0 0.0 7.024257499415354 0.0 57 0.0 0.0 0.0 7.272997852754215 0.0 58 0.0 0.0 0.0 7.506856304611263 0.0 59 0.0 0.0 0.0 7.683313136467037 0.0 60 0.0 0.0 0.0 7.919297574250058 0.0 61 0.0 0.0 0.0 8.089376448327911 0.0 62 0.0 0.0 0.0 8.221187575738249 0.0 63 0.0 0.0 0.0 8.391266449816102 0.0 64 0.0 0.0 0.0 8.5974870846355 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATGACG 15 0.002211615 70.00001 11 ACGATAC 25 2.7987971E-6 70.00001 24 CCCGTAT 15 0.002211615 70.00001 54 CGAGCGC 15 0.002211615 70.00001 25 GTGAGTT 15 0.002211615 70.00001 58 GACGATC 15 0.002211615 70.00001 23 GTAGTCT 15 0.002211615 70.00001 18 AAGCTGC 15 0.002211615 70.00001 15 TCGGCGG 20 7.849891E-5 70.0 45 CCGTATC 75 0.0 70.0 55 CTCGGCG 20 7.849891E-5 70.0 44 GTGTAGC 20 7.849891E-5 70.0 36 AGCTGCC 20 7.849891E-5 70.0 16 GTAAATC 20 7.849891E-5 70.0 38 ATCTCGG 125 0.0 67.2 42 CTCGGTG 90 0.0 66.11111 44 GTGGTCG 70 0.0 65.0 48 CGTATCA 65 0.0 64.61539 56 CGGTGGT 60 0.0 64.16667 46 GCCGTAT 50 1.2732926E-11 63.000004 54 >>END_MODULE