##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779867_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 47037 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.59908157407998 34.0 34.0 34.0 34.0 34.0 2 33.67991155898548 34.0 34.0 34.0 34.0 34.0 3 33.76663052490593 34.0 34.0 34.0 34.0 34.0 4 33.56532091757553 34.0 34.0 34.0 34.0 34.0 5 33.61674851712482 34.0 34.0 34.0 34.0 34.0 6 37.33951995237791 38.0 38.0 38.0 37.0 38.0 7 37.38752471458639 38.0 38.0 38.0 37.0 38.0 8 37.270000212598596 38.0 38.0 38.0 37.0 38.0 9 37.22333482152348 38.0 38.0 38.0 36.0 38.0 10-11 37.13907136934753 38.0 38.0 38.0 36.5 38.0 12-13 37.285105342602634 38.0 38.0 38.0 36.5 38.0 14-15 37.301156536343726 38.0 38.0 38.0 36.5 38.0 16-17 37.03519569700448 38.0 38.0 38.0 35.0 38.0 18-19 36.83757467525565 38.0 37.5 38.0 34.5 38.0 20-21 37.00741969088165 38.0 37.5 38.0 35.0 38.0 22-23 37.07325084507941 38.0 38.0 38.0 35.5 38.0 24-25 37.17933754278547 38.0 38.0 38.0 36.0 38.0 26-27 36.89575228011991 38.0 38.0 38.0 34.5 38.0 28-29 36.32756128154432 38.0 37.0 38.0 34.0 38.0 30-31 36.87514084656759 38.0 37.0 38.0 35.5 38.0 32-33 36.333110104811105 38.0 37.0 38.0 34.0 38.0 34-35 36.458925951910196 38.0 37.0 38.0 34.0 38.0 36-37 36.23906711737568 38.0 37.0 38.0 33.5 38.0 38-39 32.49942598379999 36.5 31.0 38.0 16.5 38.0 40-41 35.456077130769394 37.5 35.5 38.0 30.5 38.0 42-43 36.8342475072815 38.0 37.0 38.0 34.5 38.0 44-45 36.57219848204605 38.0 37.0 38.0 34.5 38.0 46-47 36.79030337819164 38.0 37.0 38.0 34.5 38.0 48-49 36.323936475540535 38.0 37.0 38.0 34.0 38.0 50-51 36.290228968684225 38.0 37.0 38.0 33.5 38.0 52-53 36.199980866126666 38.0 37.0 38.0 33.5 38.0 54-55 36.25225886004635 38.0 37.0 38.0 34.0 38.0 56-57 36.088855581776045 38.0 37.0 38.0 33.0 38.0 58-59 36.024406318430174 38.0 37.0 38.0 33.0 38.0 60-61 35.51220315921509 38.0 36.5 38.0 30.5 38.0 62-63 35.54017050407126 38.0 36.5 38.0 31.0 38.0 64-65 36.21963560601229 38.0 37.0 38.0 34.0 38.0 66-67 35.74484979909433 38.0 36.5 38.0 31.5 38.0 68-69 35.50598465038161 38.0 36.5 38.0 30.0 38.0 70-71 31.984916129855222 36.0 29.5 38.0 18.0 38.0 72-73 25.442449560983906 24.0 15.0 38.0 10.0 38.0 74-75 24.51059803984098 23.5 11.0 38.0 11.0 38.0 76 24.521249229330103 25.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 0.0 22 1.0 23 6.0 24 18.0 25 45.0 26 116.0 27 198.0 28 394.0 29 593.0 30 927.0 31 1427.0 32 2033.0 33 3283.0 34 5776.0 35 12668.0 36 8883.0 37 10668.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 14.611425411544515 8.00757156833553 12.665362201709984 64.71564081840997 2 6.811658906818037 7.5515020090567 68.96273146671768 16.67410761740757 3 7.032761443119247 10.055913429853094 69.83438569636668 13.07693943066097 4 5.344728617896549 56.94240704126538 25.435295618343005 12.277568722495056 5 5.006696855666815 21.946552713821035 67.52556498075982 5.5211854497523225 6 10.510874418011353 68.13572294151413 13.723239152156813 7.630163488317708 7 9.347960116504028 20.29891362119183 12.900482598805196 57.45264366349895 8 8.09362842017986 68.24414822373875 8.172289899440866 15.489933456640518 9 8.250951378701874 14.307885281799434 8.204179688330465 69.23698365116823 10-11 9.073707932053491 40.27361438867275 35.18187809596701 15.470799583306757 12-13 9.268235644280034 10.821268363203435 40.91353615239067 38.99695984012586 14-15 8.90575504390161 9.086463847609329 14.605523311435679 67.4022577970534 16-17 37.30467504305122 35.01817717966707 8.819652613899697 18.85749516338202 18-19 39.76550375236516 16.042689797393543 8.997172438718454 35.194634011522844 20-21 11.297489210621425 10.017645683185577 9.029062227608053 69.65580287858495 22-23 9.518038990581882 39.08306227012777 8.674022577970533 42.72487616131981 24-25 37.678848566022495 38.26349469566511 8.775006909454259 15.282649828858133 26-27 39.532708293471096 41.821332142781216 9.8178030061441 8.82815655760359 28-29 11.312371112103238 40.72432340497906 10.878669983204711 37.084635499712995 30-31 8.685715500563386 15.602610710717096 63.638199715117885 12.073474073601632 32-33 38.00625039862236 9.463826349469565 18.20375449114527 34.326168760762805 34-35 36.94538342156175 9.96343304207326 9.941110189850544 43.150073346514446 36-37 43.14688436762549 34.90762591151647 10.181346599485511 11.764143121372536 38-39 11.76308012840955 16.11497331887663 36.92199757637604 35.19994897633777 40-41 8.65382571167379 9.525479941322788 41.43015073240215 40.39054361460127 42-43 37.3535727193486 9.172566277611242 38.701447796415586 14.772413206624572 44-45 11.056189808023472 37.1866828241597 41.75330059315007 10.003826774666752 46-47 37.12821821119544 11.237961604694178 16.98662754852563 34.64719263558475 48-49 35.62302017560644 8.838786487233454 11.388906605438272 44.14928673172184 50-51 13.47848736458256 8.98034254366847 39.75824199189887 37.782928099850096 52-53 7.571665532494046 8.823154134059203 67.91106668935012 15.694113644096634 54-55 7.321975497702909 8.966096647949634 45.311170665305426 38.400757189042025 56-57 36.07657537888859 9.10183461845254 17.702738633342197 37.118851369316666 58-59 10.302108699582089 10.141537021873903 64.2042131456098 15.352141132934207 60-61 35.7995810427145 35.84530480737535 18.439437278691663 9.915676871218485 62-63 9.616468361563898 70.89327676587239 9.448467255733835 10.041787616829883 64-65 6.896881678131346 74.06572610225714 9.049831485163253 9.98756073444826 66-67 7.464591042490749 73.76334481731955 8.578963038577687 10.19310110161201 68-69 7.2438500627219184 73.66529883273446 8.642867773690813 10.447983330852805 70-71 7.661230304705607 68.78947032681963 9.501584128941717 14.047715239533055 72-73 9.967462731003977 55.64829976819854 12.18765285073262 22.196584650064864 74-75 11.400748426603164 49.89368940295969 13.245237285252594 25.460324885184555 76 11.191205239431829 51.086586714297866 12.98588075189249 24.736327294377816 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 3.0 14 3.0 15 1.0 16 1.0 17 0.0 18 2.0 19 12.0 20 22.0 21 24.0 22 16.5 23 22.0 24 43.0 25 51.0 26 65.5 27 90.0 28 116.0 29 132.0 30 148.0 31 195.0 32 282.5 33 339.0 34 363.0 35 427.0 36 498.0 37 529.0 38 580.5 39 680.5 40 917.0 41 3937.0 42 6769.0 43 8467.5 44 9390.0 45 6934.0 46 5254.0 47 4082.0 48 2248.5 49 1285.0 50 983.0 51 875.0 52 689.0 53 598.0 54 585.0 55 543.0 56 479.5 57 427.0 58 396.0 59 376.0 60 357.5 61 321.0 62 283.0 63 267.0 64 229.0 65 191.5 66 161.5 67 147.0 68 130.5 69 108.0 70 93.5 71 85.0 72 74.0 73 61.5 74 55.5 75 51.0 76 43.0 77 27.0 78 20.5 79 22.0 80 20.0 81 18.0 82 12.5 83 7.0 84 6.0 85 5.0 86 6.5 87 8.0 88 4.0 89 0.5 90 2.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04039373259349023 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.013818908518825604 52-53 0.027637817037651207 54-55 0.04464570444543657 56-57 0.052086655186342666 58-59 0.037204753704530476 60-61 0.032952781852584136 62-63 0.028700810000637796 64-65 0.018070880370771945 66-67 0.03188978888959755 68-69 0.00850394370389268 70-71 0.01700788740778536 72-73 0.02976380296362438 74-75 0.01062992962986585 76 0.01913387333375853 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 47037.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.953951144843423 #Duplication Level Percentage of deduplicated Percentage of total 1 53.510953226761394 9.607330399472755 2 15.76080521018354 5.659374534940579 3 11.995263469508584 6.460871229032464 4 7.779751332149202 5.587091013457491 5 4.665482534043813 4.188192274167145 6 2.5458851391355832 2.7425218445053896 7 1.2551805802249854 1.5774815570720924 8 0.7341622261693309 1.0544890192826923 9 0.40260509177027826 0.6505516933477901 >10 1.0775606867969212 3.414333397112911 >50 0.10657193605683836 1.2840954992877947 >100 0.13025458851391356 6.093075663839105 >500 0.0 0.0 >1k 0.023682652457075192 8.225439547590195 >5k 0.0 0.0 >10k+ 0.011841326228537596 43.45515232689159 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT 20440 43.45515232689159 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 2498 5.310712843080979 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 1371 2.9147267045092162 No Hit ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT 490 1.0417331037268533 RNA PCR Primer, Index 30 (95% over 22bp) CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT 463 0.9843314837255778 No Hit TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 455 0.9673235963177923 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT 439 0.9333078215022217 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAGCTCGTATGCCGT 188 0.39968535408295597 No Hit CTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 177 0.3762995088972511 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATATCGTATGCCGT 176 0.3741735229712779 No Hit CTTTACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 147 0.312519931118056 No Hit CTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 113 0.24023640963496823 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCG 109 0.23173246593107552 No Hit CCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 109 0.23173246593107552 No Hit TCTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 85 0.18070880370771944 No Hit TTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 75 0.15944894444798774 No Hit CTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 73 0.15519697259604143 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATATCGTATGCCG 71 0.15094500074409506 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCG 67 0.14244105704020238 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTCTGCCGT 64 0.13606309926228288 No Hit TATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCT 59 0.12543316963241705 RNA PCR Primer, Index 30 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCAGT 58 0.12330718370644386 No Hit CTTATACACATCTCCGAGCCCACGAGACATTACCGGATCTCGTATGCCGT 52 0.11055126815060483 No Hit CTTATACACATCTCCGAGCCCACGAGACCTTGCCGGATCTCGTATGCCGT 49 0.10417331037268533 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.00425197185194634 0.0 5 0.0 0.0 0.0 0.0212598592597317 0.0 6 0.0 0.0 0.0 0.0212598592597317 0.0 7 0.0 0.0 0.0 0.02338584518570487 0.0 8 0.0 0.0 0.0 0.02338584518570487 0.0 9 0.0 0.0 0.0 0.02338584518570487 0.0 10 0.0 0.0 0.0 0.02551183111167804 0.0 11 0.0 0.0 0.0 0.02551183111167804 0.0 12 0.0 0.0 0.0 0.02551183111167804 0.0 13 0.0 0.0 0.0 0.02551183111167804 0.0 14 0.0 0.0 0.0 0.02551183111167804 0.0 15 0.0 0.0 0.0 0.02551183111167804 0.0 16 0.0 0.0 0.0 0.02551183111167804 0.0 17 0.0 0.0 0.0 0.02551183111167804 0.0 18 0.0 0.0 0.0 0.02763781703765121 0.0 19 0.0 0.0 0.0 0.04039373259349023 0.0 20 0.0 0.0 0.0 0.0425197185194634 0.0 21 0.0 0.0 0.0 0.04677169037140974 0.0 22 0.0 0.0 0.0 0.04889767629738291 0.0 23 0.0 0.0 0.0 0.05102366222335608 0.0 24 0.0 0.0 0.0 0.05314964814932925 0.0 25 0.0 0.0 0.0 0.05740162000127559 0.0 26 0.0 0.0 0.0 0.05740162000127559 0.0 27 0.0 0.0 0.0 0.07440950740906095 0.0 28 0.0 0.0 0.0 0.10204732444671216 0.0 29 0.0 0.0 0.0 0.1275591555583902 0.0 30 0.0 0.0 0.0 0.15307098667006824 0.0 31 0.0 0.0 0.0 0.18708676148563896 0.0 32 0.0 0.0 0.0 0.20409464889342432 0.0 33 0.0 0.0 0.0 0.24448838148691457 0.0 34 0.0 0.0 0.0 0.2912600718583243 0.0 35 0.0 0.0 0.0 0.37204753704530474 0.0 36 0.0 0.0 0.0 0.5017326785296682 0.0 37 0.0 0.0 0.0 0.7589769755724217 0.0 38 0.0 0.0 0.0 1.062992962986585 0.0 39 0.0 0.0 0.0 1.2989774007696069 0.0 40 0.0 0.0 0.0 1.6051193741097434 0.0 41 0.0 0.0 0.0 2.013308671896592 0.0 42 0.0 0.0 0.0 2.338584518570487 0.0 43 0.0 0.0 0.0 2.710632055615792 0.0 44 0.0 0.0 0.0 3.035907902289687 0.0 45 0.0 0.0 0.0 3.4462231860025088 0.0 46 0.0 0.0 0.0 3.8586644556413034 0.0 47 0.0 0.0 0.0 4.192444246019091 0.0 48 0.0 0.0 0.0 4.524098050470906 0.0 49 0.0 0.0 0.0 4.77496438973574 0.0 50 0.0 0.0 0.0 5.100240236409635 0.0 51 0.0 0.0 0.0 5.42551608308353 0.0 52 0.0 0.0 0.0 5.7869336904989686 0.0 53 0.0 0.0 0.0 6.154729255692327 0.0 54 0.0 0.0 0.0 6.490635031996089 0.0 55 0.0 0.0 0.0 6.801028977188171 0.0 56 0.0 0.0 0.0 7.160320598677637 0.0 57 0.0 0.0 0.0 7.413312923868444 0.0 58 0.0 0.0 0.0 7.649297361651466 0.0 59 0.0 0.0 0.0 7.830006165359185 0.0 60 0.0 0.0 0.0 8.070242574994154 0.0 61 0.0 0.0 0.0 8.248825392775899 0.0 62 0.0 0.0 0.0 8.397644407594022 0.0 63 0.0 0.0 0.0 8.567723281671876 0.0 64 0.0 0.0 0.0 8.788825817973086 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGAT 15 0.002211615 70.00001 32 CTATACA 30 1.0030635E-7 70.00001 1 ACAGAGA 15 0.002211615 70.00001 8 CTTTAAC 15 0.002211615 70.00001 63 CCAGTTG 15 0.002211615 70.00001 32 GAGCTAA 15 0.002211615 70.00001 1 ACTCCAG 15 0.002211615 70.00001 29 CATTCCC 15 0.002211615 70.00001 28 GACATTA 30 1.0030635E-7 70.00001 26 ACATTAC 25 2.7987971E-6 70.00001 27 TTCCCGG 15 0.002211615 70.00001 30 AACTCAC 15 0.002211615 70.00001 8 AATAGAC 15 0.002211615 70.00001 45 TACCGGA 15 0.002211615 70.00001 31 GCTAAAA 15 0.002211615 70.00001 3 TACGAAA 15 0.002211615 70.00001 52 TATTTAC 15 0.002211615 70.00001 3 ATAGACT 15 0.002211615 70.00001 46 AGTTGAC 15 0.002211615 70.00001 34 CGAAAGT 15 0.002211615 70.00001 54 >>END_MODULE