##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779866_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 376609 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.715537865531626 34.0 31.0 34.0 12.0 34.0 2 30.39404793831268 34.0 32.0 34.0 12.0 34.0 3 30.037041069119432 34.0 31.0 34.0 11.0 34.0 4 30.242222039303364 34.0 31.0 34.0 12.0 34.0 5 30.907625680745813 34.0 33.0 34.0 21.0 34.0 6 33.53450129975651 38.0 34.0 38.0 21.0 38.0 7 33.357702550921516 38.0 34.0 38.0 21.0 38.0 8 32.95387258403278 37.0 34.0 38.0 11.0 38.0 9 33.85215170110114 38.0 34.0 38.0 21.0 38.0 10-11 32.415959257479244 37.0 30.5 38.0 16.5 38.0 12-13 33.32857685291642 38.0 34.0 38.0 16.0 38.0 14-15 32.07600853936045 37.0 29.5 38.0 11.0 38.0 16-17 32.752577607014175 37.5 32.5 38.0 16.0 38.0 18-19 33.69359733835357 38.0 34.0 38.0 21.0 38.0 20-21 32.32871359951568 37.0 30.5 38.0 16.0 38.0 22-23 33.25230809672631 38.0 33.0 38.0 16.0 38.0 24-25 33.569621278301895 38.0 34.0 38.0 21.0 38.0 26-27 32.459155251202176 37.0 31.5 38.0 11.0 38.0 28-29 33.73044457248765 38.0 34.5 38.0 21.0 38.0 30-31 34.1115307918823 38.0 36.0 38.0 21.0 38.0 32-33 34.222165428866546 38.0 36.0 38.0 21.0 38.0 34-35 34.12959063644257 38.0 35.5 38.0 21.0 38.0 36-37 33.644639400545394 38.0 34.0 38.0 16.0 38.0 38-39 33.579064759472026 38.0 34.0 38.0 16.0 38.0 40-41 33.60648311644172 38.0 34.0 38.0 21.0 38.0 42-43 33.98516498543583 38.0 35.0 38.0 21.5 38.0 44-45 34.03083171140361 38.0 35.0 38.0 21.0 38.0 46-47 33.94619353228414 38.0 35.0 38.0 21.0 38.0 48-49 33.69335438080343 38.0 34.5 38.0 21.0 38.0 50-51 33.04676999222005 37.5 32.5 38.0 16.0 38.0 52-53 33.61439715991917 38.0 34.0 38.0 21.0 38.0 54-55 33.753164422517784 38.0 34.5 38.0 21.0 38.0 56-57 33.822432549408006 38.0 34.5 38.0 21.0 38.0 58-59 34.06104474401833 38.0 36.0 38.0 21.0 38.0 60-61 33.919950133958565 38.0 35.0 38.0 21.0 38.0 62-63 33.94693169839276 38.0 35.0 38.0 21.0 38.0 64-65 33.93515555921393 38.0 35.0 38.0 21.0 38.0 66-67 33.72941167099034 38.0 34.0 38.0 21.0 38.0 68-69 33.108333842260805 38.0 33.5 38.0 15.0 38.0 70-71 33.17510468416846 37.0 33.5 38.0 20.0 38.0 72-73 33.39250787952491 37.5 34.0 38.0 20.0 38.0 74-75 33.47335565533484 38.0 34.0 38.0 20.5 38.0 76 32.52359077982735 37.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 81.0 13 835.0 14 2450.0 15 4082.0 16 5435.0 17 6392.0 18 6723.0 19 6034.0 20 4746.0 21 3824.0 22 3263.0 23 2981.0 24 3025.0 25 3298.0 26 3826.0 27 4521.0 28 5163.0 29 6323.0 30 7931.0 31 9942.0 32 12627.0 33 17027.0 34 23654.0 35 35630.0 36 63623.0 37 133172.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.15207324326621 20.76695131277084 9.835425694621463 28.245549749341492 2 21.0061363376871 23.611225435398516 29.704282160012106 25.678356066902282 3 18.7802203346176 22.191716076886106 31.041478031592444 27.986585556903844 4 13.557296825089152 20.709011202600045 32.04809231855851 33.6855996537523 5 13.567386865422758 33.608862241741434 35.07218361749188 17.751567275343923 6 27.591151330725783 38.84874893454311 17.414544382751945 16.14555535197916 7 27.326197386554647 28.635841005228485 19.961443582029307 24.076518026187564 8 24.346521508231543 35.38343069569835 18.76898566117897 21.50106213489113 9 23.61954229933772 18.374944898533638 19.738009124271734 38.267503677856915 10-11 23.934976015634646 25.779508469873168 24.763442330645685 25.5220731838465 12-13 23.877283867353142 23.45151071801258 25.50456839852473 27.166637016109547 14-15 24.21884853594259 24.78615003684207 22.699096539500673 28.295904887714663 16-17 24.44567767323361 26.650619940866978 23.366174688038107 25.537527697861307 18-19 22.149052638287195 26.48762541539597 25.574053003397516 25.789268942919314 20-21 23.796696308372876 26.03562315292518 25.16283466406804 25.0048458746339 22-23 24.570370999776955 25.79805312742297 24.535188155197503 25.096387717602575 24-25 22.45686427581372 27.435993436041233 24.433619577166347 25.6735227109787 26-27 23.140302755923283 27.553789494088 24.932887599009046 24.37302015097967 28-29 22.591292433190297 27.107054849810936 25.80511535029953 24.49653736669924 30-31 22.970906165280173 26.590840898650853 25.665212461730867 24.773040474338107 32-33 21.90696704933638 27.337540177664604 25.61970853021108 25.135784242787935 34-35 22.30915582061968 27.291013060397535 25.7917957283193 24.60803539066348 36-37 23.75662436544853 26.061657887293833 25.388299687554362 24.793418059703278 38-39 23.3954924154413 25.844192916652837 26.269990374083047 24.490324293822816 40-41 22.55776254525612 26.13669705647672 26.141078287283943 25.164462110983216 42-43 21.319676320838006 26.080468392158945 26.675915907144702 25.92393937985834 44-45 21.02709125790798 24.92435557856863 27.98372267473895 26.064830488784445 46-47 21.07866761726856 25.061769208199074 27.701149883099863 26.158413291432502 48-49 21.05119912481944 25.54499638881808 27.969533307842635 25.43427117851984 50-51 22.25517751381091 25.47898392079755 27.107615548937947 25.1582230164536 52-53 19.27431529721684 26.70138367919781 27.47428422717248 26.550016796412873 54-55 19.646001014384613 26.160102819298803 27.088583393302407 27.105312773014184 56-57 19.794593302706005 26.275592851262715 26.985553814695805 26.944260031335475 58-59 19.632529064672546 26.021047655972 27.340177494994343 27.00624578436111 60-61 19.28948839605717 25.85002848367268 27.449761839314906 27.410721280955247 62-63 19.961203256695825 26.18607566028817 26.474860453876754 27.37786062913925 64-65 20.592617380149946 25.540789253531564 25.76706424138123 28.099529124937256 66-67 20.47276401767089 26.626503944347586 24.819181439988952 28.08155059799257 68-69 20.552775627740743 27.184596205343215 24.32008305707386 27.942545109842182 70-71 21.262825006372672 27.28367427139094 24.175137012490442 27.278363709745946 72-73 22.33103420806309 26.877725923909797 23.37088497513891 27.4203548928882 74-75 22.152355030371428 26.718358947123843 24.01885352009825 27.11043250240648 76 22.093319667125158 27.082193745054404 23.604214573630237 27.2202720141902 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.5 4 1.0 5 0.5 6 0.0 7 0.5 8 1.0 9 0.5 10 2.0 11 3.0 12 2.0 13 5.0 14 10.0 15 18.5 16 28.0 17 31.0 18 48.5 19 81.0 20 113.0 21 130.0 22 187.5 23 299.0 24 491.0 25 629.0 26 855.0 27 1263.0 28 1631.5 29 1818.0 30 2262.5 31 3131.0 32 4412.5 33 5270.0 34 5859.0 35 7405.5 36 9189.5 37 10016.0 38 11154.5 39 13938.5 40 16595.0 41 18612.0 42 19618.0 43 20284.5 44 22258.0 45 23678.5 46 23792.0 47 24102.5 48 23880.5 49 22349.5 50 21351.0 51 20594.0 52 18587.0 53 16192.5 54 15048.0 55 13782.0 56 11546.5 57 9743.0 58 8909.0 59 7953.5 60 6408.5 61 5335.0 62 4851.0 63 4564.0 64 3936.5 65 3351.5 66 2919.0 67 2731.0 68 2555.0 69 2190.5 70 1893.0 71 1784.0 72 1677.5 73 1523.5 74 1344.0 75 1212.0 76 1176.5 77 1063.5 78 907.0 79 828.0 80 738.5 81 602.5 82 497.5 83 439.0 84 377.0 85 293.5 86 219.5 87 167.0 88 145.0 89 105.5 90 69.5 91 43.0 92 35.0 93 34.5 94 29.0 95 16.5 96 9.0 97 10.5 98 12.0 99 13.0 100 14.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.6552737720022623E-4 2 0.0 3 0.0 4 0.0 5 0.0 6 0.002655273772002262 7 0.004779492789604072 8 0.002389746394802036 9 0.008231348693207012 10-11 0.0025225100834021493 12-13 0.0 14-15 3.982910658003393E-4 16-17 1.3276368860011312E-4 18-19 0.0027880374606023754 20-21 0.0 22-23 0.001327636886001131 24-25 0.0018586916404015837 26-27 5.310547544004525E-4 28-29 0.004513965412403846 30-31 0.0 32-33 1.3276368860011312E-4 34-35 0.003319092215002828 36-37 0.016860988452214367 38-39 0.005708838609804864 40-41 6.638184430005655E-4 42-43 3.982910658003393E-4 44-45 0.003053564837802602 46-47 0.0014604005746012441 48-49 2.6552737720022623E-4 50-51 0.001194873197401018 52-53 0.010753858776609162 54-55 0.006903711807205881 56-57 0.010355567710808823 58-59 0.009293458202007917 60-61 0.020578371733017534 62-63 0.008231348693207012 64-65 0.020180080667217194 66-67 0.015267824189013008 68-69 1.3276368860011312E-4 70-71 2.6552737720022623E-4 72-73 0.004381201723803733 74-75 0.005708838609804864 76 0.0029208011492024883 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 376609.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.80103741310351 #Duplication Level Percentage of deduplicated Percentage of total 1 76.62845086379812 42.75947053558962 2 8.473165514735724 9.456228517903732 3 5.305847302722707 8.882153515423322 4 3.461695902935812 7.726648903700334 5 1.9995835079904645 5.578941707000032 6 1.1672106787028818 3.9078940050764053 7 0.6408586502672594 2.5032404264052044 8 0.4188827274423987 1.8699272596572898 9 0.32179215312088694 1.6160702377987568 >10 1.5561863955578898 14.768219925428856 >50 0.025838778601345702 0.898559743719673 >100 4.875241245532818E-4 0.03264522229678585 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001327636886001131 0.0 2 0.0 0.0 0.0 0.00212421901760181 0.0 3 0.0 0.0 0.0 0.00212421901760181 0.0 4 0.0 0.0 0.0 0.003717383280803167 0.0 5 0.0 0.0 0.0 0.004779492789604072 0.0 6 0.0 0.0 0.0 0.004779492789604072 0.0 7 0.0 0.0 0.0 0.004779492789604072 0.0 8 0.0 0.0 0.0 0.00637265705280543 0.0 9 0.0 0.0 0.0 0.006638184430005655 0.0 10 0.0 0.0 0.0 0.008231348693207014 0.0 11 0.0 0.0 0.0 0.00849687607040724 0.0 12 0.0 0.0 0.0 0.009027930824807693 0.0 13 0.0 0.0 0.0 0.010355567710808823 0.0 14 0.0 0.0 0.0 0.010355567710808823 0.0 15 0.0 0.0 0.0 0.010355567710808823 0.0 16 0.0 0.0 0.0 0.010621095088009049 0.0 17 0.0 0.0 0.0 0.011152149842409502 0.0 18 0.0 0.0 0.0 0.011683204596809955 0.0 19 0.0 0.0 0.0 0.012479786728410634 0.0 20 0.0 0.0 0.0 0.01699375214081448 0.0 21 0.0 0.0 0.0 0.017790334272415158 0.0 22 0.0 0.0 0.0 0.025756155588421946 0.0 23 0.0 0.0 0.0 0.029208011492024885 0.0 24 0.0 0.0 0.0 0.030801175755226243 0.0 25 0.0 0.0 0.0 0.03478408641322964 0.0 26 0.0 0.0 0.0 0.039829106580033934 0.0 27 0.0 0.0 0.0 0.0820479595548699 0.0 28 0.0 0.0 0.0 0.10567989612569004 0.0 29 0.0 0.0 0.0 0.13223263384571265 0.0 30 0.0 0.0 0.0 0.17392043206614818 0.0 31 0.0 0.0 0.0 0.2177324493041855 0.0 32 0.0 0.0 0.0 0.27057239736703054 0.0 33 0.0 0.0 0.0 0.3159775788682692 0.0 34 0.0 0.0 0.0 0.38793549808953054 0.0 35 0.0 0.0 0.0 0.4872427371624151 0.0 36 0.0 0.0 0.0 0.6776258666149774 0.0 37 0.0 0.0 0.0 1.0650303099501075 0.0 38 0.0 0.0 0.0 1.6024577214033653 0.0 39 0.0 0.0 0.0 2.1401506602338234 0.0 40 0.0 0.0 0.0 2.815917835208399 0.0 41 0.0 0.0 0.0 3.7402186352423867 0.0 42 0.0 0.0 0.0 4.7927691584640835 0.0 43 0.0 0.0 0.0 5.893645664336221 0.0 44 0.0 0.0 0.0 6.852465023406238 0.0 45 0.0 0.0 0.0 7.702152630446962 0.0 46 0.0 0.0 0.0 8.5696305717601 0.0 47 0.0 0.0 0.0 9.430470328643235 0.0 48 0.0 0.0 0.0 10.237673555331922 0.0 49 0.0 0.0 0.0 10.944507433438925 0.0 50 0.0 0.0 0.0 11.704446786985972 0.0 51 0.0 0.0 0.0 12.5599759963251 0.0 52 0.0 0.0 0.0 13.62819263480161 0.0 53 0.0 0.0 0.0 14.771022466271384 0.0 54 0.0 0.0 0.0 15.76117405585103 0.0 55 0.0 0.0 0.0 16.653080515866588 0.0 56 0.0 0.0 0.0 17.399743500553626 0.0 57 0.0 0.0 0.0 18.094628646686616 0.0 58 0.0 0.0 0.0 18.75579181591518 0.0 59 0.0 0.0 0.0 19.33145516968527 0.0 60 0.0 0.0 0.0 19.877910511963336 0.0 61 0.0 0.0 0.0 20.453042810979024 0.0 62 0.0 0.0 0.0 21.050479409679536 0.0 63 0.0 0.0 0.0 21.815729310770585 0.0 64 0.0 0.0 0.0 22.556019638404816 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGTGTCG 20 0.006945455 52.505676 35 CGCATAG 20 0.006949104 52.498703 25 CCGTGTA 35 2.0834443E-5 50.00541 34 ACGATAC 35 2.0850817E-5 49.998768 24 ATTCGCG 30 5.875055E-4 46.665512 30 CGACGAT 55 1.3110912E-7 44.53844 22 GACGAAT 50 3.475223E-6 41.998962 23 ATCAGCG 35 0.0012556657 39.993702 11 ATCTCGG 130 0.0 37.69138 42 TGGTCGC 85 2.570232E-9 37.05791 49 GTGTCGC 40 0.002416093 35.003784 36 TCCGTGT 50 1.7072182E-4 35.003784 33 GTAGATC 200 0.0 33.24918 38 TACACAG 120 6.548362E-11 32.08254 5 TAGATCT 175 0.0 31.99921 39 CGACGAG 110 9.0403773E-10 31.813173 22 CAATTTG 45 0.004302541 31.114473 32 GACGCAT 45 0.0043053385 31.110346 23 GACCTAT 45 0.0043053385 31.110346 1 GTCGACG 45 0.004308137 31.106215 20 >>END_MODULE