SRR1779866_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779866_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	376609
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	29148	7.739591990632194	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	3492	0.92722160118319	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	2286	0.6069955842797171	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	826	0.21932561356738686	Illumina PCR Primer Index 10 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	671	0.1781688701013518	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAATT	15	0.0022216155	70.01687	64
CGCGAAT	15	0.0022216155	70.01687	63
ATATACG	15	0.002225129	69.98898	3
AGACCGT	20	7.927887E-5	69.98898	25
ATATCGT	30	8.377016E-6	58.32415	37
TGCGTAT	25	2.3845569E-4	56.020935	55
GGTCGAT	25	2.390825E-4	55.991184	10
GAGACCG	25	2.390825E-4	55.991184	24
TATGCCG	4150	0.0	53.63011	43
CGTATGC	4170	0.0	53.54073	41
GCCGTCT	4130	0.0	53.48036	46
ATGCCGT	4165	0.0	53.352943	44
TCGTATG	4190	0.0	53.285168	40
TGCCGTC	4185	0.0	53.279358	45
CCGTCTT	4150	0.0	53.222622	47
TCTCGTA	4035	0.0	53.07715	38
GTATGCC	4210	0.0	53.032032	42
ATCTCGT	4055	0.0	52.987957	37
CTCGTAT	4175	0.0	52.973694	39
CGTCTTC	4145	0.0	52.956062	48