##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779866_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 376609 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.571985799595865 34.0 34.0 34.0 34.0 34.0 2 33.65466571430847 34.0 34.0 34.0 34.0 34.0 3 33.76851588783062 34.0 34.0 34.0 34.0 34.0 4 33.57478180287779 34.0 34.0 34.0 34.0 34.0 5 33.63625404597341 34.0 34.0 34.0 34.0 34.0 6 37.316285590625824 38.0 38.0 38.0 37.0 38.0 7 37.35506055351837 38.0 38.0 38.0 37.0 38.0 8 37.27830720986487 38.0 38.0 38.0 36.0 38.0 9 37.188625338215495 38.0 38.0 38.0 36.0 38.0 10-11 37.14004577691983 38.0 38.0 38.0 36.0 38.0 12-13 37.304395274674796 38.0 38.0 38.0 36.5 38.0 14-15 37.318672681746854 38.0 38.0 38.0 36.5 38.0 16-17 37.2574487067489 38.0 38.0 38.0 36.0 38.0 18-19 37.133752778080186 38.0 38.0 38.0 36.0 38.0 20-21 37.13571635303458 38.0 38.0 38.0 36.0 38.0 22-23 37.135202557559694 38.0 38.0 38.0 36.0 38.0 24-25 37.30907917760861 38.0 38.0 38.0 36.5 38.0 26-27 37.22597441909248 38.0 38.0 38.0 36.0 38.0 28-29 36.79355379186371 38.0 37.0 38.0 35.0 38.0 30-31 37.071262237493 38.0 38.0 38.0 36.0 38.0 32-33 37.14336354149795 38.0 38.0 38.0 36.0 38.0 34-35 37.130862512579355 38.0 38.0 38.0 36.0 38.0 36-37 37.103995124917354 38.0 38.0 38.0 36.0 38.0 38-39 36.803110122169144 38.0 37.5 38.0 35.0 38.0 40-41 36.98738744958299 38.0 37.5 38.0 35.5 38.0 42-43 37.22674312084948 38.0 38.0 38.0 36.5 38.0 44-45 37.01309581024351 38.0 38.0 38.0 35.5 38.0 46-47 37.12834664068039 38.0 38.0 38.0 36.0 38.0 48-49 36.81268902230165 38.0 37.0 38.0 35.0 38.0 50-51 36.97945216391536 38.0 37.5 38.0 35.5 38.0 52-53 36.903709151932105 38.0 38.0 38.0 35.5 38.0 54-55 36.91340886702123 38.0 37.5 38.0 35.5 38.0 56-57 36.78688241651156 38.0 37.0 38.0 35.0 38.0 58-59 36.88351446725915 38.0 37.5 38.0 35.5 38.0 60-61 36.58294544208981 38.0 37.0 38.0 34.0 38.0 62-63 36.41915753473762 38.0 37.0 38.0 34.0 38.0 64-65 36.753617146695916 38.0 37.0 38.0 34.5 38.0 66-67 36.56142444816773 38.0 37.0 38.0 34.5 38.0 68-69 36.656334553874174 38.0 37.0 38.0 34.0 38.0 70-71 36.06274013632176 38.0 37.0 38.0 32.5 38.0 72-73 35.00810787846281 38.0 37.0 38.0 24.0 38.0 74-75 34.84309323462796 38.0 37.0 38.0 23.5 38.0 76 34.57540313694044 38.0 36.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 0.0 21 7.0 22 20.0 23 21.0 24 71.0 25 132.0 26 325.0 27 568.0 28 996.0 29 1665.0 30 2714.0 31 4468.0 32 7222.0 33 11285.0 34 19065.0 35 37499.0 36 59783.0 37 230767.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.144362324461895 16.474413810325863 10.656617447810124 32.724606417402114 2 20.63413248222958 18.74304650180957 36.67437581151805 23.948445204442802 3 18.74331202918677 19.738243111556017 35.01987472418344 26.49857013507378 4 13.23760186294008 23.422435470209155 34.2663080276892 29.07365463916157 5 12.803730128594909 31.544386884009672 40.81607184108718 14.83581114630824 6 27.169026762504352 41.46342758670133 17.729262975659104 13.638282675135219 7 26.33898818137644 27.63874469277155 20.10281220045193 25.919454925400082 8 23.542188317326456 39.40054539323277 17.855122952452014 19.20214333698876 9 22.6566545143637 17.17457628468783 18.628338674859073 41.540430526089395 10-11 23.36375391984791 27.13291503920512 27.79354715367928 21.709783887267697 12-13 23.444739769893975 21.016359141709305 28.069961153344714 27.468939935052006 14-15 21.42075733718525 21.354375492885193 21.870560714162433 35.35430645576712 16-17 26.20635725646493 28.16050598896999 22.38103709682987 23.25209965773521 18-19 26.206622783842125 24.452017875303035 23.632733152951737 25.708626187903107 20-21 21.202493833126663 23.853120876027923 23.238690525186602 31.705694765658816 22-23 21.431643959650458 28.45948981569745 23.386854801664324 26.72201142298777 24-25 25.981593544464122 28.22066504340068 23.381270130401187 22.41647128173401 26-27 25.97402080141473 29.138974373952824 23.428675363573362 21.458329461059083 28-29 21.45753287892748 28.914736503907235 24.082271002551717 25.545459614613563 30-31 25.67875435796808 24.64957024394 28.115233571157354 21.556441826934567 32-33 25.39849021133324 28.659033639663416 24.90859220039882 21.03388394860452 34-35 22.001067420056344 28.61389398553938 28.620930461035186 20.764108133369092 36-37 21.143812282765413 27.971981551157832 29.505800445554943 21.378405720521815 38-39 20.57677856875433 24.540704019287908 29.103393705408 25.77912370654976 40-41 20.744060816390476 22.434806390712914 29.982953142383746 26.838179650512867 42-43 25.406190505272047 22.302573756867204 29.37569203072683 22.915543707133924 44-45 20.460875868606433 26.812556258613046 30.698018369183956 22.02854950359657 46-47 24.419490771596006 22.20193888090832 26.848535218223674 26.530035129272004 48-49 23.882461651208548 21.95991067659031 26.343369383100246 27.814258289100895 50-51 19.799716384378836 22.58382328728563 30.83045203231306 26.78600829602248 52-53 18.567034788290226 22.687951852028917 35.532767074097094 23.212246285583763 54-55 18.240224205716714 22.512751036021676 31.66905748592073 27.577967272340874 56-57 22.445238749885437 22.690703040011474 26.713235811752266 28.150822398350822 58-59 18.275871228219295 22.499070335741607 34.73690501487463 24.488153421164473 60-61 22.567030421831152 26.848026306178525 26.767147556571963 23.81779571541836 62-63 18.216804111389983 33.033345285048405 24.45413861333546 24.295711990226152 64-65 18.465346271716673 34.16243088640673 22.990859212755673 24.381363629120923 66-67 18.275568517611 33.95978841038186 22.345069571442043 25.419573500565097 68-69 18.161250104560427 34.15481316545244 22.387483021378127 25.296453708609008 70-71 18.51721532735744 33.10433559896805 22.652717898602777 25.72573117507173 72-73 19.582027001724956 31.321947831721914 22.37502041661853 26.7210047499346 74-75 20.022625786226154 31.462191434865222 22.18641576475556 26.328767014153065 76 20.557570864824385 31.439709795465287 21.84022816959757 26.162491170112755 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.0 7 1.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 0.5 14 1.0 15 7.5 16 24.0 17 35.0 18 44.0 19 94.0 20 155.0 21 175.0 22 209.5 23 296.5 24 548.5 25 748.0 26 961.5 27 1281.5 28 1681.5 29 1975.0 30 2276.5 31 3023.5 32 4165.5 33 4862.0 34 5584.0 35 6983.5 36 8646.0 37 9631.0 38 15252.5 39 24210.5 40 27204.5 41 25011.5 42 23161.0 43 22238.5 44 21819.5 45 21976.0 46 21629.0 47 21564.0 48 20911.0 49 19631.0 50 18939.0 51 18256.0 52 15870.0 53 13365.5 54 12564.0 55 11568.0 56 9665.5 57 8006.0 58 7253.0 59 6258.5 60 4996.0 61 4304.5 62 3881.0 63 3670.0 64 3153.5 65 2840.5 66 2660.0 67 2487.0 68 2321.0 69 2115.5 70 1862.0 71 1648.0 72 1567.0 73 1442.0 74 1321.0 75 1244.0 76 1189.5 77 1021.5 78 821.0 79 734.0 80 672.0 81 522.5 82 385.0 83 335.0 84 319.5 85 265.5 86 162.5 87 98.0 88 83.0 89 53.5 90 34.0 91 21.0 92 13.0 93 8.0 94 1.5 95 0.0 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.051777838554044116 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 5.310547544004525E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.011417677219609727 52-53 0.0273493198516233 54-55 0.04487412674683824 56-57 0.047662164207440606 58-59 0.03425303165882918 60-61 0.03173052157542704 62-63 0.024959573456821264 64-65 0.014604005746012443 66-67 0.033323685838628395 68-69 0.008629639759007351 70-71 0.010753858776609162 72-73 0.020578371733017534 74-75 0.012612550417010746 76 0.012479786728410632 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 376609.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.240838641668148 #Duplication Level Percentage of deduplicated Percentage of total 1 35.28611167488449 7.847927160529887 2 13.512255106791942 6.010477710304321 3 12.688482706748964 8.466074894652014 4 10.879765045785032 9.679003953702646 5 8.199520063036497 9.118210133055769 6 5.5706116211602055 7.433704452097533 7 3.7607000871527325 5.854878667264988 8 2.177624431417963 3.8745754881057013 9 1.3347500626783348 2.6717364693886765 >10 6.333496495982617 25.251653571741517 >50 0.2244481321856234 3.2195194485527425 >100 0.026265206957892095 0.9009343908403676 >500 0.0023877460870810998 0.39749448366873863 >1k 0.0023877460870810998 1.5342171854629072 >5k 0.0 0.0 >10k+ 0.0011938730435405499 7.739591990632194 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT 29148 7.739591990632194 No Hit TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG 3492 0.92722160118319 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC 2286 0.6069955842797171 No Hit ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT 826 0.21932561356738686 Illumina PCR Primer Index 10 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC 671 0.1781688701013518 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002389746394802036 0.0 2 0.0 0.0 0.0 0.003982910658003393 0.0 3 0.0 0.0 0.0 0.003982910658003393 0.0 4 0.0 0.0 0.0 0.00637265705280543 0.0 5 0.0 0.0 0.0 0.008231348693207014 0.0 6 0.0 0.0 0.0 0.008231348693207014 0.0 7 0.0 0.0 0.0 0.008231348693207014 0.0 8 0.0 0.0 0.0 0.010090040333608597 0.0 9 0.0 0.0 0.0 0.010621095088009049 0.0 10 0.0 0.0 0.0 0.01274531410561086 0.0 11 0.0 0.0 0.0 0.01327636886001131 0.0 12 0.0 0.0 0.0 0.014338478368812217 0.0 13 0.0 0.0 0.0 0.01566611525481335 0.0 14 0.0 0.0 0.0 0.01566611525481335 0.0 15 0.0 0.0 0.0 0.01566611525481335 0.0 16 0.0 0.0 0.0 0.015931642632013573 0.0 17 0.0 0.0 0.0 0.016462697386414028 0.0 18 0.0 0.0 0.0 0.017259279518014706 0.0 19 0.0 0.0 0.0 0.018055861649615385 0.0 20 0.0 0.0 0.0 0.02389746394802036 0.0 21 0.0 0.0 0.0 0.024959573456821267 0.0 22 0.0 0.0 0.0 0.02549062821122172 0.0 23 0.0 0.0 0.0 0.028942484114824658 0.0 24 0.0 0.0 0.0 0.028942484114824658 0.0 25 0.0 0.0 0.0 0.0334564495272285 0.0 26 0.0 0.0 0.0 0.0385014696940328 0.0 27 0.0 0.0 0.0 0.08417217857247171 0.0 28 0.0 0.0 0.0 0.1083351698976923 0.0 29 0.0 0.0 0.0 0.1356844897493156 0.0 30 0.0 0.0 0.0 0.17949650698735292 0.0 31 0.0 0.0 0.0 0.228884599146595 0.0 32 0.0 0.0 0.0 0.2814590198322398 0.0 33 0.0 0.0 0.0 0.3300505298598812 0.0 34 0.0 0.0 0.0 0.40519477760754524 0.0 35 0.0 0.0 0.0 0.5114057284876358 0.0 36 0.0 0.0 0.0 0.7145341720458088 0.0 37 0.0 0.0 0.0 1.129022407855362 0.0 38 0.0 0.0 0.0 1.6903472832566402 0.0 39 0.0 0.0 0.0 2.2399889540611087 0.0 40 0.0 0.0 0.0 2.952929961843716 0.0 41 0.0 0.0 0.0 3.913076957799734 0.0 42 0.0 0.0 0.0 5.0205916481018775 0.0 43 0.0 0.0 0.0 6.169794136624457 0.0 44 0.0 0.0 0.0 7.170566821292109 0.0 45 0.0 0.0 0.0 8.05105560408806 0.0 46 0.0 0.0 0.0 8.969514801823642 0.0 47 0.0 0.0 0.0 9.864873117742805 0.0 48 0.0 0.0 0.0 10.703939629695519 0.0 49 0.0 0.0 0.0 11.45431999766336 0.0 50 0.0 0.0 0.0 12.238422342535626 0.0 51 0.0 0.0 0.0 13.10988319450677 0.0 52 0.0 0.0 0.0 14.199607550536498 0.0 53 0.0 0.0 0.0 15.341640799874671 0.0 54 0.0 0.0 0.0 16.34028926552472 0.0 55 0.0 0.0 0.0 17.233523362426283 0.0 56 0.0 0.0 0.0 17.98231056613092 0.0 57 0.0 0.0 0.0 18.69631368342233 0.0 58 0.0 0.0 0.0 19.364646091835297 0.0 59 0.0 0.0 0.0 19.959958471518206 0.0 60 0.0 0.0 0.0 20.50641381379627 0.0 61 0.0 0.0 0.0 21.094025899540373 0.0 62 0.0 0.0 0.0 21.705269921855294 0.0 63 0.0 0.0 0.0 22.484858301315157 0.0 64 0.0 0.0 0.0 23.257542968967815 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAATT 15 0.0022216155 70.01687 64 CGCGAAT 15 0.0022216155 70.01687 63 ATATACG 15 0.002225129 69.98898 3 AGACCGT 20 7.927887E-5 69.98898 25 ATATCGT 30 8.377016E-6 58.32415 37 TGCGTAT 25 2.3845569E-4 56.020935 55 GGTCGAT 25 2.390825E-4 55.991184 10 GAGACCG 25 2.390825E-4 55.991184 24 TATGCCG 4150 0.0 53.63011 43 CGTATGC 4170 0.0 53.54073 41 GCCGTCT 4130 0.0 53.48036 46 ATGCCGT 4165 0.0 53.352943 44 TCGTATG 4190 0.0 53.285168 40 TGCCGTC 4185 0.0 53.279358 45 CCGTCTT 4150 0.0 53.222622 47 TCTCGTA 4035 0.0 53.07715 38 GTATGCC 4210 0.0 53.032032 42 ATCTCGT 4055 0.0 52.987957 37 CTCGTAT 4175 0.0 52.973694 39 CGTCTTC 4145 0.0 52.956062 48 >>END_MODULE