##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779865_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 40907 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 20.72227247170411 21.0 12.0 27.0 12.0 34.0 2 20.341995257535384 21.0 12.0 31.0 12.0 34.0 3 20.82719338988437 23.0 11.0 31.0 11.0 34.0 4 21.50443689344122 23.0 12.0 32.0 12.0 34.0 5 20.313173784437872 21.0 11.0 31.0 11.0 34.0 6 22.51617082650891 22.0 12.0 34.0 11.0 37.0 7 22.81570391375559 23.0 12.0 34.0 11.0 37.0 8 22.86982668003031 23.0 11.0 34.0 11.0 37.0 9 23.28650353240277 24.0 11.0 34.0 11.0 37.0 10-11 22.066040042046595 22.0 11.5 32.5 11.0 37.0 12-13 21.77168944190481 21.0 11.0 32.0 11.0 37.0 14-15 21.237868824406583 21.0 11.0 29.5 11.0 37.0 16-17 21.164531742733516 21.0 11.0 29.5 11.0 37.0 18-19 20.86933776615249 21.0 11.0 31.0 10.0 37.0 20-21 21.157295817341776 21.0 11.0 29.5 10.5 36.5 22-23 21.17759796611827 21.0 11.0 32.0 10.5 37.0 24-25 21.425880656122423 21.0 11.0 31.0 10.0 37.0 26-27 20.809506930354218 21.0 11.0 31.0 10.0 37.0 28-29 20.64914317842912 21.0 11.0 31.0 10.0 37.0 30-31 20.617950473024177 21.0 11.0 31.0 10.5 37.0 32-33 20.820678612462416 21.0 11.0 31.0 11.0 37.0 34-35 21.005426944043805 21.0 11.0 31.0 11.0 37.0 36-37 20.803578849585648 21.0 11.0 31.0 11.0 37.0 38-39 20.67103429730853 21.0 11.0 31.0 11.0 37.0 40-41 20.704231549612537 21.0 11.0 28.5 11.0 37.0 42-43 20.81570391375559 21.0 11.0 31.0 11.0 37.0 44-45 21.002249003837974 21.0 11.0 31.0 11.0 37.0 46-47 20.83087246681497 21.0 11.0 30.5 11.0 37.0 48-49 20.48948835162686 21.0 11.0 27.0 11.0 37.0 50-51 20.288165839587357 21.0 11.0 27.0 11.0 37.0 52-53 20.704610457867844 21.0 11.0 29.0 11.0 37.0 54-55 20.559134133522377 21.0 11.0 30.0 11.0 37.0 56-57 20.59249028283668 21.0 11.0 30.0 11.0 37.0 58-59 20.346187694037695 21.0 11.0 29.0 10.0 37.0 60-61 20.741364558632995 21.0 11.0 30.0 11.0 37.0 62-63 20.35562373187963 21.0 11.0 27.5 11.0 37.0 64-65 20.34296086244408 20.0 11.0 29.0 10.5 37.0 66-67 20.747891558901898 21.0 11.0 29.5 11.0 37.0 68-69 20.630283325592195 21.0 11.0 29.5 10.5 37.0 70-71 20.81756178649131 21.0 11.0 30.0 11.0 37.0 72-73 20.178086879996087 20.0 11.0 27.0 10.5 37.0 74-75 20.04704573789327 20.0 11.0 27.0 10.0 37.0 76 19.95545994573056 20.0 11.0 27.0 11.0 36.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 10 1.0 11 1.0 12 58.0 13 604.0 14 2052.0 15 3301.0 16 4285.0 17 5017.0 18 5198.0 19 4525.0 20 3473.0 21 2396.0 22 1542.0 23 1014.0 24 766.0 25 522.0 26 426.0 27 334.0 28 314.0 29 235.0 30 238.0 31 253.0 32 251.0 33 330.0 34 398.0 35 546.0 36 916.0 37 1911.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.34688439631359 20.25325738871098 9.255139707140588 40.144718507834845 2 11.885496369814458 23.484978121103968 26.902486127068713 37.727039382012855 3 11.073899332632557 21.336201628083213 40.440511403916204 27.14938763536803 4 9.428704133766837 46.67905248490478 15.593908133082357 28.29833524824602 5 10.284303419952575 31.96274476251008 33.651942210379644 24.1010096071577 6 12.298628596572714 41.1323245410321 12.049282518884299 34.519764343510886 7 11.898010071872097 38.33911895565443 11.51909255365961 38.24377841881387 8 10.193854352555798 43.66000928936368 10.340528515901925 35.8056078421786 9 15.435388451571896 23.355986896787755 11.428641275118565 49.77998337652178 10-11 11.96890431721508 36.85767369090109 18.73930474746981 32.434117244414026 12-13 12.299850881267265 25.846432150976607 23.658542547730217 38.195174420025914 14-15 26.172782164421736 30.00220011245019 15.81880851687975 28.006209206248318 16-17 27.375510303859972 25.192509839391793 14.404625125284182 33.02735473146405 18-19 16.311588622835004 25.880972461589234 20.3280652219085 37.47937369366727 20-21 26.180115872589045 24.224460361307358 15.83958735668712 33.75583640941648 22-23 27.53263579914927 23.936586319855277 14.380530973451327 34.15024690754412 24-25 16.470487575324213 33.299108943566424 13.853544057790327 36.37685942331903 26-27 24.04630071015609 33.415227408847 15.289746128365907 27.248725752630996 28-29 18.11959125800616 31.875519483694326 19.461692661223292 30.54319659707622 30-31 20.40359840614076 28.578238443298215 19.736230962915883 31.281932187645147 32-33 15.86525533527269 31.332045860121738 21.116190383064023 31.686508421541546 34-35 15.184813963721702 36.32718916540361 18.450838507798366 30.037158363076323 36-37 23.103629539981174 25.80653048251244 20.10366621434946 30.986173763156934 38-39 23.811561075187328 22.380178220000243 24.172157097629846 29.636103607182584 40-41 17.679125821986457 31.162148287579143 20.24347911115457 30.91524677927983 42-43 12.08717334441538 30.118317158432546 22.81761067787909 34.97689881927298 44-45 12.150732148532036 25.308626885374142 26.926931820959737 35.61370914513409 46-47 16.357836067176766 28.622240692302054 22.089128999926665 32.930794240594516 48-49 17.97247414867871 29.24560588652309 20.480602341897473 32.301317622900726 50-51 27.139609357811622 28.24944386046398 14.985210355195932 29.625736426528466 52-53 10.89733403415272 33.40708235035265 19.952572455353323 35.7430111601413 54-55 15.42946547530283 27.426629670826664 19.256579188617668 37.88732566525284 56-57 18.162037942499513 30.151085468413847 16.84554077840798 34.841335810678665 58-59 15.774355213299106 30.90820193130424 18.22271116000489 35.094731695391765 60-61 12.195897210200739 28.119269419790214 19.57016063962444 40.114672730384605 62-63 15.328386852302314 29.484531041816915 18.164260655918053 37.02282144996272 64-65 15.912174965464127 28.08836293842223 18.168926270492307 37.83053582562134 66-67 12.669462000171142 38.01205334767673 13.90291309609672 35.415571556055404 68-69 14.063607695504437 41.20932847678881 12.012613978047767 32.71444984965898 70-71 14.397291417116875 41.9989243894688 11.748600484024738 31.85518370938959 72-73 16.938027136046937 36.24862486248625 13.324776922136659 33.48857107933016 74-75 14.859859921037513 34.36579433083571 17.668773147865203 33.10557260026158 76 12.2992299229923 39.59907101821293 14.428553966507762 33.673145092287 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 0.5 16 0.0 17 0.0 18 2.5 19 5.0 20 6.5 21 8.0 22 15.0 23 22.0 24 25.0 25 28.0 26 34.5 27 53.0 28 75.0 29 85.0 30 105.0 31 154.5 32 221.0 33 258.0 34 305.0 35 397.0 36 511.5 37 581.0 38 693.0 39 928.0 40 1145.0 41 1360.5 42 1482.0 43 1655.5 44 1935.0 45 2156.5 46 2272.0 47 2386.5 48 2535.0 49 2619.5 50 2670.0 51 2650.5 52 2510.0 53 2382.0 54 2375.0 55 2234.5 56 1986.0 57 1741.5 58 1605.0 59 1531.0 60 1314.0 61 1077.5 62 984.0 63 900.5 64 697.0 65 531.5 66 442.0 67 398.0 68 353.0 69 261.5 70 211.5 71 208.0 72 174.5 73 123.5 74 85.5 75 65.0 76 66.0 77 52.0 78 41.5 79 46.0 80 41.0 81 28.5 82 20.5 83 20.0 84 20.0 85 16.0 86 10.0 87 8.0 88 8.5 89 7.5 90 7.0 91 7.0 92 6.0 93 3.5 94 1.5 95 2.5 96 3.0 97 4.5 98 6.0 99 5.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0024445693891021096 8 0.0 9 0.0024445693891021096 10-11 0.0024445693891021096 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0012222846945510548 20-21 0.0 22-23 0.0024445693891021096 24-25 0.0012222846945510548 26-27 0.0012222846945510548 28-29 0.0024445693891021096 30-31 0.0 32-33 0.0 34-35 0.0024445693891021096 36-37 0.015889701029163712 38-39 0.006111423472755274 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.006111423472755274 54-55 0.003666854083653164 56-57 0.007333708167306328 58-59 0.004889138778204219 60-61 0.019556555112816877 62-63 0.006111423472755274 64-65 0.01833427041826582 66-67 0.013445131640061602 68-69 0.0 70-71 0.0 72-73 0.004889138778204219 74-75 0.003666854083653164 76 0.004889138778204219 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 40907.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 96.73161072677048 #Duplication Level Percentage of deduplicated Percentage of total 1 98.16780389183725 94.95929791967144 2 1.005812484205206 1.9458772337252794 3 0.49027040687389434 1.4227393844574279 4 0.1844831943391458 0.713814261617816 5 0.08339651250947687 0.4033539492018481 6 0.032853171594642405 0.19067641234996455 7 0.012635835228708616 0.08555992861857384 8 0.010108668182966895 0.07822622045126751 9 0.0025271670457417236 0.02200112450191899 >10 0.010108668182966895 0.178453565404454 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0024445693891021096 0.0 5 0.0 0.0 0.0 0.009778277556408439 0.0 6 0.0 0.0 0.0 0.009778277556408439 0.0 7 0.0 0.0 0.0 0.009778277556408439 0.0 8 0.0 0.0 0.0 0.009778277556408439 0.0 9 0.0 0.0 0.0 0.012222846945510549 0.0 10 0.0 0.0 0.0 0.012222846945510549 0.0 11 0.0 0.0 0.0 0.012222846945510549 0.0 12 0.0 0.0 0.0 0.012222846945510549 0.0 13 0.0 0.0 0.0 0.012222846945510549 0.0 14 0.0 0.0 0.0 0.012222846945510549 0.0 15 0.0 0.0 0.0 0.012222846945510549 0.0 16 0.0 0.0 0.0 0.014667416334612658 0.0 17 0.0 0.0 0.0 0.014667416334612658 0.0 18 0.0 0.0 0.0 0.019556555112816877 0.0 19 0.0 0.0 0.0 0.029334832669225316 0.0 20 0.0 0.0 0.0 0.03422397144742954 0.0 21 0.0 0.0 0.0 0.03422397144742954 0.0 22 0.0 0.0 0.0 0.08311535922947173 0.0 23 0.0 0.0 0.0 0.10756105312049283 0.0 24 0.0 0.0 0.0 0.12467303884420759 0.0 25 0.0 0.0 0.0 0.12467303884420759 0.0 26 0.0 0.0 0.0 0.13445131640061603 0.0 27 0.0 0.0 0.0 0.13689588578971815 0.0 28 0.0 0.0 0.0 0.1515633021243308 0.0 29 0.0 0.0 0.0 0.15889701029163714 0.0 30 0.0 0.0 0.0 0.16867528784804556 0.0 31 0.0 0.0 0.0 0.18089813479355613 0.0 32 0.0 0.0 0.0 0.2053438286845772 0.0 33 0.0 0.0 0.0 0.23956780013200674 0.0 34 0.0 0.0 0.0 0.25912435524482363 0.0 35 0.0 0.0 0.0 0.3031266042486616 0.0 36 0.0 0.0 0.0 0.3593517001980101 0.0 37 0.0 0.0 0.0 0.47180189209670714 0.0 38 0.0 0.0 0.0 0.5989195003300168 0.0 39 0.0 0.0 0.0 0.7187034003960202 0.0 40 0.0 0.0 0.0 0.8800449800767595 0.0 41 0.0 0.0 0.0 1.1098345026523577 0.0 42 0.0 0.0 0.0 1.3102891925587308 0.0 43 0.0 0.0 0.0 1.5107438824651038 0.0 44 0.0 0.0 0.0 1.623194074363801 0.0 45 0.0 0.0 0.0 1.8212041948810718 0.0 46 0.0 0.0 0.0 2.002102329674628 0.0 47 0.0 0.0 0.0 2.124330799129733 0.0 48 0.0 0.0 0.0 2.3076735033123916 0.0 49 0.0 0.0 0.0 2.4005671400982718 0.0 50 0.0 0.0 0.0 2.4690150829931308 0.0 51 0.0 0.0 0.0 2.579020705502726 0.0 52 0.0 0.0 0.0 2.76969711785269 0.0 53 0.0 0.0 0.0 2.9359278363116337 0.0 54 0.0 0.0 0.0 3.07037915271225 0.0 55 0.0 0.0 0.0 3.16327278949813 0.0 56 0.0 0.0 0.0 3.346615493680788 0.0 57 0.0 0.0 0.0 3.498178795805119 0.0 58 0.0 0.0 0.0 3.635074681594837 0.0 59 0.0 0.0 0.0 3.752414012271738 0.0 60 0.0 0.0 0.0 3.896643606228763 0.0 61 0.0 0.0 0.0 3.9528687021781113 0.0 62 0.0 0.0 0.0 4.001760089960153 0.0 63 0.0 0.0 0.0 4.109321143080646 0.0 64 0.0 0.0 0.0 4.211993057422935 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGAGAG 30 9.9978934E-8 70.0 29 TTGTAGA 15 0.002209553 70.0 36 GGATAGT 15 0.002209553 70.0 31 ATATCTA 15 0.002209553 70.0 33 GAGCGGC 15 0.002209553 70.0 26 AGGATAG 15 0.002209553 70.0 30 TTCGCGG 15 0.002209553 70.0 17 GGTGGTA 20 7.8376994E-5 69.99999 47 CTCTCGG 20 7.8376994E-5 69.99999 42 GCCGCTG 35 2.9050898E-7 60.0 14 CTTACGC 35 2.9050898E-7 60.0 12 TCTTACG 30 8.237101E-6 58.333332 11 TGTGTAG 30 8.237101E-6 58.333332 35 AGATCCC 25 2.3637828E-4 55.999996 40 TTAGATC 25 2.3637828E-4 55.999996 38 GAATAGA 25 2.3637828E-4 55.999996 26 TGTAGAG 25 2.3637828E-4 55.999996 37 GACGAGA 25 2.3637828E-4 55.999996 23 TCGCCCA 20 0.0069044377 52.499996 18 GAGGATA 20 0.0069044377 52.499996 29 >>END_MODULE