##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779865_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 40907 Sequences flagged as poor quality 0 Sequence length 76 %GC 43 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.600410687657366 34.0 34.0 34.0 34.0 34.0 2 33.692326496687606 34.0 34.0 34.0 34.0 34.0 3 33.793776126335345 34.0 34.0 34.0 34.0 34.0 4 33.57713838707312 34.0 34.0 34.0 34.0 34.0 5 33.664751753978535 34.0 34.0 34.0 34.0 34.0 6 37.394651282176646 38.0 38.0 38.0 37.0 38.0 7 37.44102476348791 38.0 38.0 38.0 37.0 38.0 8 37.3087491138436 38.0 38.0 38.0 37.0 38.0 9 37.27100496247586 38.0 38.0 38.0 37.0 38.0 10-11 37.18330603564182 38.0 38.0 38.0 36.5 38.0 12-13 37.33288923656098 38.0 38.0 38.0 36.5 38.0 14-15 37.36822548708045 38.0 38.0 38.0 37.0 38.0 16-17 37.0434277751974 38.0 38.0 38.0 35.0 38.0 18-19 36.81703620407265 38.0 38.0 38.0 34.0 38.0 20-21 37.01438629085487 38.0 38.0 38.0 35.0 38.0 22-23 37.17333219253429 38.0 38.0 38.0 36.0 38.0 24-25 37.111557924071676 38.0 38.0 38.0 35.5 38.0 26-27 36.89874593590339 38.0 38.0 38.0 35.0 38.0 28-29 36.29507174811157 38.0 37.0 38.0 34.0 38.0 30-31 36.369166646295255 38.0 37.0 38.0 33.0 38.0 32-33 36.62642090595742 38.0 37.0 38.0 34.5 38.0 34-35 36.552607133253474 38.0 37.0 38.0 34.5 38.0 36-37 36.409893172317695 38.0 37.0 38.0 34.0 38.0 38-39 32.88719534553988 36.5 32.5 37.5 18.5 38.0 40-41 35.4760432199868 37.5 35.5 38.0 30.5 38.0 42-43 36.8583005353607 38.0 37.0 38.0 34.5 38.0 44-45 36.643300657589165 38.0 37.0 38.0 34.5 38.0 46-47 36.820067470115134 38.0 37.0 38.0 34.5 38.0 48-49 36.280954359889506 38.0 37.0 38.0 34.0 38.0 50-51 36.22347031070477 38.0 37.0 38.0 33.5 38.0 52-53 36.11149680983695 38.0 37.0 38.0 33.0 38.0 54-55 36.19733786393527 38.0 37.0 38.0 34.0 38.0 56-57 36.04093431442051 38.0 37.0 38.0 33.0 38.0 58-59 35.87785709047351 38.0 37.0 38.0 32.0 38.0 60-61 35.33500378908255 38.0 36.5 38.0 29.0 38.0 62-63 35.39452905370719 38.0 36.0 38.0 29.0 38.0 64-65 36.12682425990661 38.0 37.0 38.0 34.0 38.0 66-67 35.56643117314886 38.0 36.5 38.0 31.0 38.0 68-69 35.21502432346542 38.0 36.0 38.0 30.0 38.0 70-71 30.496284254528568 33.5 27.5 37.5 17.5 38.0 72-73 21.959432370987848 22.5 11.0 28.0 10.0 37.5 74-75 20.701591414672308 21.0 11.0 25.0 10.5 37.0 76 20.886449751876206 21.0 11.0 27.0 11.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 1.0 22 2.0 23 6.0 24 15.0 25 36.0 26 84.0 27 162.0 28 307.0 29 561.0 30 845.0 31 1334.0 32 2013.0 33 3092.0 34 5653.0 35 12895.0 36 10451.0 37 3450.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 5.836880473604384 4.183179216204316 13.207593326483682 76.77234698370762 2 2.6034663993937466 3.39550688146283 79.08915344562055 14.911873273522868 3 2.9677072383699614 5.705624954164324 82.91001540078715 8.416652406678564 4 2.092551397071406 69.12997775441856 22.174688928545237 6.602781919964798 5 2.0143251766201384 17.769574889383236 77.47818221820226 2.737917715794363 6 4.2804410003177935 77.73975114283618 12.811988168284158 5.16781968856186 7 3.9479795633999073 17.07042804410003 9.509374923607208 69.47221746889285 8 3.1388270956071085 77.96465152663359 4.752242892414501 14.144278485344808 9 3.466399393746791 14.290952648690933 2.9945975016500843 79.24805045591219 10-11 3.5128462121397317 44.8382917349109 38.324736597648325 13.324125455301047 12-13 4.3146649717652235 6.39621580658567 45.54966142713961 43.7394577945095 14-15 4.793800572029237 4.352555797296306 11.450363018554281 79.40328061212017 16-17 42.376610360085074 37.502138998215464 3.309946952844257 16.811303688855208 18-19 44.88962769208204 12.621311755934192 3.2647224191458677 39.2243381328379 20-21 7.515828586794436 4.534676216784414 3.2757229813968265 84.67377221502433 22-23 4.883027354731464 42.74207348375584 3.3160583763170117 49.05884078519569 24-25 42.47909842076957 41.536693883537865 3.3503642497433135 12.63384344594925 26-27 45.973794216148825 45.52277116385949 4.2376610360085065 4.265773583983181 28-29 41.3670032023859 12.673869997799889 4.540787640257168 41.41833915955704 30-31 45.17442002591244 5.522282249981666 42.673625540860975 6.629672183244921 32-33 12.5736426528467 42.4658371427873 40.563962158065856 4.396558046300144 34-35 37.01322512039504 46.07891069988022 12.719094531498277 4.188769648226465 36-37 11.605593174762266 40.82797565208888 5.094482606888796 42.47194856626005 38-39 4.455227711638595 12.62986774879605 40.80108538880876 42.11381915075659 40-41 4.174102231891852 4.33422152687804 46.001906764123504 45.489769477106606 42-43 42.22382477326619 3.837973940890312 42.07226147114186 11.86593981470164 44-45 7.185811719265652 41.28999926662919 46.015351895763565 5.508837118341605 46-47 42.10526315789473 6.553890532182756 13.167673014398515 38.173173295523995 48-49 40.00293348326692 3.5544038917544674 5.745960349084508 50.696702275894104 50-51 11.01902107476407 3.3873649210307564 43.80592636056917 41.787687643636005 52-53 3.5651408450704225 3.5113458528951487 80.26212832550861 12.661384976525822 54-55 3.4778780541492407 3.669870619023161 50.05502971604666 42.79722161078093 56-57 41.67267924620596 3.480366380101011 14.021743118144132 40.8252112555489 58-59 6.891239224796723 5.241792504738033 75.76572721159137 12.101241058873876 60-61 40.756816236703756 39.42168969311652 15.313608020540409 4.50788604963932 62-63 6.069904764233407 85.5165837377899 3.726298030490116 4.687213467486583 64-65 2.590401212684286 89.47702990146941 3.480355003545146 4.452213882301166 66-67 2.6715083935492547 89.38243529080928 3.337857169056964 4.608199146584504 68-69 2.833567630340444 89.08868651060449 3.3408715848664503 4.736874274188619 70-71 3.5413050387502136 82.47683543994329 4.455663398772706 9.526196122533799 72-73 6.58679706601467 66.0281173594132 7.6760391198044005 19.709046454767726 74-75 7.93398533007335 59.409535452322736 9.601466992665037 23.055012224938874 76 7.769791208253875 60.93834042345117 8.522810620507554 22.769057747787393 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.0 16 3.0 17 4.0 18 2.5 19 2.0 20 6.0 21 9.0 22 11.0 23 15.0 24 18.0 25 19.0 26 25.0 27 33.5 28 38.0 29 40.0 30 53.5 31 62.0 32 80.0 33 103.0 34 106.5 35 129.0 36 150.5 37 153.0 38 188.5 39 369.0 40 4133.5 41 9532.0 42 11311.0 43 10049.5 44 6887.0 45 3632.5 46 2279.0 47 1689.0 48 836.5 49 432.0 50 290.0 51 270.5 52 253.5 53 243.5 54 231.0 55 216.5 56 204.5 57 198.0 58 189.0 59 175.5 60 162.5 61 129.5 62 96.0 63 89.5 64 82.0 65 67.5 66 51.0 67 48.0 68 46.5 69 38.0 70 32.5 71 34.0 72 33.5 73 22.5 74 16.0 75 20.0 76 16.0 77 20.0 78 17.5 79 7.0 80 8.5 81 8.0 82 5.5 83 5.0 84 3.0 85 4.0 86 4.0 87 1.0 88 0.5 89 0.5 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.07089251228396118 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0024445693891021096 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.012222846945510547 52-53 0.026890263280123203 54-55 0.04889138778204219 56-57 0.05011367247659325 58-59 0.03544625614198059 60-61 0.029334832669225312 62-63 0.02077883980736793 64-65 0.014667416334612656 66-67 0.030557117363776372 68-69 0.011000562250959495 70-71 0.009778277556408439 72-73 0.01711198572371477 74-75 0.01711198572371477 76 0.012222846945510547 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 40907.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 10.621653995648666 #Duplication Level Percentage of deduplicated Percentage of total 1 69.64326812428078 7.397266971422983 2 11.990794016110472 2.547241303444398 3 6.812428078250863 2.170777617522673 4 4.188722669735328 1.7796465152663359 5 2.5086306098964326 1.3322903170606497 6 1.3118527042577675 0.8360427310729215 7 0.6444188722669736 0.4791356002640135 8 0.3222094361334868 0.2737917715794363 9 0.3682393555811277 0.35201799203070383 >10 1.6800920598388953 3.5397364754198546 >50 0.20713463751438435 1.4765199110176743 >100 0.20713463751438435 4.6813503801305405 >500 0.04602991944764096 2.8357004913584474 >1k 0.04602991944764096 11.518810961449141 >5k 0.0 0.0 >10k+ 0.02301495972382048 58.77967096096023 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 24045 58.77967096096023 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 3128 7.646613049111399 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 1584 3.8721979123377417 No Hit ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT 609 1.4887427579631847 RNA PCR Primer, Index 24 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 551 1.3469577333952625 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT 448 1.0951670863177452 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT 380 0.9289363678588017 No Hit CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 249 0.6086977778864253 No Hit CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 156 0.3813528246999291 RNA PCR Primer, Index 24 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAGCTCGTATGCCGT 155 0.378908255310827 No Hit CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 149 0.36424083897621434 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATATCGTATGCCGT 144 0.35201799203070383 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCG 130 0.3177940205832743 No Hit CCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 104 0.2542352164666194 No Hit TATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCT 81 0.19801012051727088 RNA PCR Primer, Index 24 (95% over 22bp) TTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 76 0.18578727357176034 No Hit CTTATACACATCTCCGAGCCCACGAGAAGTGATAGCATCTCGTATGCCGT 75 0.18334270418265822 No Hit TCTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 74 0.1808981347935561 No Hit CTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 74 0.1808981347935561 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCAGT 58 0.14178502456792236 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGCTAGCATCTCGTATGCCGT 58 0.14178502456792236 No Hit TCTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 56 0.13689588578971815 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTCTGCCGT 52 0.1271176082333097 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCG 48 0.11733933067690125 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATATCGTATGCCG 47 0.11489476128779916 No Hit CTTATACACATCTCCGAGCCCACGAGACGTTATAGCATCTCGTATGCCGT 46 0.11245019189869705 No Hit CTTATACACCTCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 45 0.11000562250959493 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCC 44 0.10756105312049281 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGAATCTCGTATGCCGT 42 0.10267191434228862 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATCGCATCTCGTATGCCGT 42 0.10267191434228862 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0024445693891021096 0.0 5 0.0 0.0 0.0 0.014667416334612658 0.0 6 0.0 0.0 0.0 0.014667416334612658 0.0 7 0.0 0.0 0.0 0.014667416334612658 0.0 8 0.0 0.0 0.0 0.014667416334612658 0.0 9 0.0 0.0 0.0 0.01711198572371477 0.0 10 0.0 0.0 0.0 0.01711198572371477 0.0 11 0.0 0.0 0.0 0.01711198572371477 0.0 12 0.0 0.0 0.0 0.01711198572371477 0.0 13 0.0 0.0 0.0 0.01711198572371477 0.0 14 0.0 0.0 0.0 0.01711198572371477 0.0 15 0.0 0.0 0.0 0.01711198572371477 0.0 16 0.0 0.0 0.0 0.019556555112816877 0.0 17 0.0 0.0 0.0 0.019556555112816877 0.0 18 0.0 0.0 0.0 0.026890263280123207 0.0 19 0.0 0.0 0.0 0.03666854083653164 0.0 20 0.0 0.0 0.0 0.04400224900383797 0.0 21 0.0 0.0 0.0 0.046446818392940084 0.0 22 0.0 0.0 0.0 0.05866966533845063 0.0 23 0.0 0.0 0.0 0.07333708167306328 0.0 24 0.0 0.0 0.0 0.07333708167306328 0.0 25 0.0 0.0 0.0 0.08067078984036961 0.0 26 0.0 0.0 0.0 0.09289363678588017 0.0 27 0.0 0.0 0.0 0.09533820617498227 0.0 28 0.0 0.0 0.0 0.11000562250959493 0.0 29 0.0 0.0 0.0 0.11733933067690126 0.0 30 0.0 0.0 0.0 0.1271176082333097 0.0 31 0.0 0.0 0.0 0.14422959395702448 0.0 32 0.0 0.0 0.0 0.16378614906984135 0.0 33 0.0 0.0 0.0 0.200454689906373 0.0 34 0.0 0.0 0.0 0.22245581440829199 0.0 35 0.0 0.0 0.0 0.2640134940230278 0.0 36 0.0 0.0 0.0 0.34468428386339744 0.0 37 0.0 0.0 0.0 0.5329161268242599 0.0 38 0.0 0.0 0.0 0.6575891656684675 0.0 39 0.0 0.0 0.0 0.7773730657344708 0.0 40 0.0 0.0 0.0 0.9411592148043122 0.0 41 0.0 0.0 0.0 1.1562813210452978 0.0 42 0.0 0.0 0.0 1.339624025227956 0.0 43 0.0 0.0 0.0 1.5034101742977974 0.0 44 0.0 0.0 0.0 1.6109712274182904 0.0 45 0.0 0.0 0.0 1.8089813479355612 0.0 46 0.0 0.0 0.0 1.9972131908964237 0.0 47 0.0 0.0 0.0 2.102329674627814 0.0 48 0.0 0.0 0.0 2.293006086977779 0.0 49 0.0 0.0 0.0 2.3907888625418634 0.0 50 0.0 0.0 0.0 2.447013958491212 0.0 51 0.0 0.0 0.0 2.5521304422226025 0.0 52 0.0 0.0 0.0 2.7036937443469333 0.0 53 0.0 0.0 0.0 2.8503679076930597 0.0 54 0.0 0.0 0.0 2.9725963771481654 0.0 55 0.0 0.0 0.0 3.060600875155841 0.0 56 0.0 0.0 0.0 3.236609871171193 0.0 57 0.0 0.0 0.0 3.3808394651282176 0.0 58 0.0 0.0 0.0 3.500623365194221 0.0 59 0.0 0.0 0.0 3.6179626958711224 0.0 60 0.0 0.0 0.0 3.7621922898281466 0.0 61 0.0 0.0 0.0 3.820861955166597 0.0 62 0.0 0.0 0.0 3.8624196347813333 0.0 63 0.0 0.0 0.0 3.97486982668003 0.0 64 0.0 0.0 0.0 4.060429755298604 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAGCTCG 15 0.0022097058 69.99878 36 AGCTCGT 15 0.0022097058 69.99878 37 GATAACA 15 0.0022097058 69.99878 31 GTCTGCC 15 0.0022097058 69.99878 42 TGATAAC 15 0.0022097058 69.99878 30 TAGCAGC 15 0.0022097058 69.99878 33 ATAACAT 15 0.0022097058 69.99878 32 TCTGCCG 15 0.0022097058 69.99878 43 ATAGCAG 15 0.0022097058 69.99878 32 GCTCGTA 15 0.0022097058 69.99878 38 TAACATC 15 0.0022097058 69.99878 33 GTGATAA 15 0.0022097058 69.99878 29 CTGCCGT 15 0.0022097058 69.99878 44 CGAGACA 20 7.8383746E-5 69.99878 23 CTTGAAC 20 7.8383746E-5 69.99878 57 TTTACAC 25 2.792569E-6 69.99878 2 TCTTTAT 80 0.0 65.70418 1 CTTTATA 85 0.0 61.763626 2 TTTATAC 85 0.0 61.763626 3 TGACAAA 35 2.9054354E-7 59.998947 59 >>END_MODULE