##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779864_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 346650 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.6564402134718 34.0 31.0 34.0 12.0 34.0 2 30.40518101831819 34.0 32.0 34.0 12.0 34.0 3 29.932349632193855 34.0 31.0 34.0 11.0 34.0 4 30.03820279821145 34.0 31.0 34.0 12.0 34.0 5 30.648244627145537 34.0 32.0 34.0 21.0 34.0 6 33.38580124044425 38.0 34.0 38.0 12.0 38.0 7 33.58394922832829 38.0 34.0 38.0 21.0 38.0 8 32.890783210731286 38.0 34.0 38.0 11.0 38.0 9 33.7316255589211 38.0 34.0 38.0 21.0 38.0 10-11 32.315681523150154 37.0 30.5 38.0 16.5 38.0 12-13 33.20450887061878 38.0 34.0 38.0 16.0 38.0 14-15 31.954878119140343 37.0 29.0 38.0 11.0 38.0 16-17 32.58344439636521 37.5 31.0 38.0 16.0 38.0 18-19 33.48574498773979 38.0 34.0 38.0 21.0 38.0 20-21 32.16999711524593 37.0 30.0 38.0 16.0 38.0 22-23 33.055142074138175 38.0 32.5 38.0 16.0 38.0 24-25 33.39447569594692 38.0 34.0 38.0 21.0 38.0 26-27 32.27998557622963 37.0 31.0 38.0 11.0 38.0 28-29 33.49970863983845 38.0 34.0 38.0 21.0 38.0 30-31 33.87513486225299 38.0 35.0 38.0 21.0 38.0 32-33 33.99427520553873 38.0 36.0 38.0 21.0 38.0 34-35 33.92837155632482 38.0 35.5 38.0 21.0 38.0 36-37 33.44958171065916 38.0 34.0 38.0 16.0 38.0 38-39 33.41270157219097 38.0 34.0 38.0 16.0 38.0 40-41 33.43350064906967 38.0 34.0 38.0 16.0 38.0 42-43 33.76958026828213 38.0 35.0 38.0 21.0 38.0 44-45 33.82951968844656 38.0 35.0 38.0 21.0 38.0 46-47 33.75774412231357 38.0 34.5 38.0 21.0 38.0 48-49 33.47911149574499 38.0 34.0 38.0 16.0 38.0 50-51 32.87900331746719 37.5 32.5 38.0 11.0 38.0 52-53 33.42501658733593 38.0 34.0 38.0 21.0 38.0 54-55 33.55333333333333 38.0 34.0 38.0 21.0 38.0 56-57 33.61827058993221 38.0 34.0 38.0 21.0 38.0 58-59 33.82946632049618 38.0 35.0 38.0 21.0 38.0 60-61 33.725166594547815 38.0 34.5 38.0 21.0 38.0 62-63 33.73696812346748 38.0 34.5 38.0 21.0 38.0 64-65 33.721495744987735 38.0 34.5 38.0 21.0 38.0 66-67 33.547097937400835 38.0 34.0 38.0 21.0 38.0 68-69 32.95941006779172 38.0 33.0 38.0 11.0 38.0 70-71 32.99709937977787 37.0 33.5 38.0 11.0 38.0 72-73 33.231549112938126 37.5 34.0 38.0 15.0 38.0 74-75 33.323445838742245 38.0 34.0 38.0 15.0 38.0 76 32.457605654117984 37.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 3.0 12 112.0 13 1000.0 14 2723.0 15 4383.0 16 5545.0 17 6580.0 18 6878.0 19 6245.0 20 5131.0 21 3977.0 22 3219.0 23 2754.0 24 2651.0 25 2787.0 26 3132.0 27 3780.0 28 4350.0 29 5406.0 30 6582.0 31 8406.0 32 10722.0 33 14337.0 34 20691.0 35 31373.0 36 57888.0 37 125994.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.29983643397212 20.551047312988064 11.800986011787138 29.34813024125268 2 18.915909418722055 21.753065051204384 34.67791720755805 24.653108322515504 3 17.597339095165427 22.819047509151908 31.36198287028089 28.221630525401775 4 13.063031876532524 22.6764748305207 33.52891965959902 30.731573633347757 5 12.99697100822155 36.12779460550988 34.43502091446704 16.440213471801528 6 27.276189047521516 39.31595330065802 17.49609829132566 15.911759360494804 7 25.61708093886312 29.543435112742046 22.62947448591013 22.21000946248471 8 22.006277369735923 39.01373751593864 18.57507168779317 20.40491342653227 9 23.495182043736655 18.266112745946568 20.64537533898794 37.593329871328834 10-11 23.64621407285389 26.82949696946968 24.81457654793604 24.70971240974039 12-13 23.422506018326867 24.07878851693137 25.67117506299591 26.827530401745857 14-15 24.07380963713964 25.355944133610848 22.813887843161012 27.756358386088504 16-17 24.581348857201377 26.762084990869727 23.498841767897787 25.15772438403111 18-19 21.937027704175314 26.5909310547261 25.889347732330965 25.58269350876763 20-21 23.93336218087408 25.893119861531805 25.351939997115245 24.82157796047887 22-23 24.558804650887726 26.080108238002442 24.435623342136807 24.92546376897302 24-25 21.907954425800572 28.120677295261558 24.4199011376241 25.551467141313772 26-27 23.483408289076273 27.88757503988184 24.753857648514778 23.87515902252711 28-29 22.387736762162483 27.62070164253187 25.928260577936964 24.063301017368687 30-31 22.866279338118208 27.083092935773468 25.312709145877086 24.737918580231245 32-33 21.93307370546661 27.730708207125343 25.627722486658012 24.708495600750034 34-35 21.95790739974123 27.579725969700597 26.07860304840317 24.383763582154998 36-37 23.77154892597989 26.113908163706924 25.62428771332535 24.49025519698784 38-39 23.14852613433923 26.16376605673319 26.65089542658079 24.03681238234679 40-41 22.016376914233955 26.83800355693769 26.348023130191706 24.79759639863665 42-43 21.12570010082317 26.718717771562673 26.89843976500556 25.257142362608594 44-45 20.83900691214992 25.53730714640141 27.59696050035195 26.02672544109671 46-47 21.252277215155182 25.937967433118747 27.20743825375281 25.60231709797326 48-49 21.200293669235553 26.02333487668344 27.64875659349456 25.127614860586444 50-51 23.037967015055834 25.860611637909898 26.39112862512729 24.710292721906978 52-53 19.69086738888969 26.924541638417267 27.429568829969853 25.955022142723195 54-55 20.11632368681463 26.57644272241279 26.752139957705722 26.555093633066857 56-57 20.054038302856846 26.862056629140866 26.659521185438223 26.42438388256406 58-59 19.98346852311594 26.876344264399766 26.924525008547036 26.215662203937264 60-61 19.615129932238748 26.435833108520434 26.765478548521354 27.183558410719467 62-63 20.178381840422833 26.632498211277035 26.22917003254322 26.95994991575692 64-65 20.694261708561275 26.161911686632966 25.83414121829051 27.30968538651525 66-67 20.189501534218042 27.398234531230393 25.173005264091795 27.239258670459776 68-69 20.288795229729377 28.388245102366383 24.228249487230524 27.094710180673708 70-71 21.169024485933857 28.30104313309178 24.128222288892477 26.40171009208188 72-73 21.658290877409602 27.15602047115978 24.082028883490946 27.103659767939668 74-75 21.613489065161858 27.37265287929341 24.427653795278133 26.586204260266598 76 21.637207584836098 27.519119314329892 24.312613410493338 26.53105969034067 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 5.0 14 6.5 15 15.0 16 38.5 17 51.0 18 77.0 19 124.0 20 188.0 21 231.0 22 314.0 23 495.0 24 748.5 25 904.0 26 1031.5 27 1404.5 28 1888.0 29 2126.0 30 2453.5 31 3415.0 32 4716.0 33 5383.0 34 6076.5 35 7485.0 36 9293.0 37 10386.0 38 11157.5 39 13455.0 40 16077.5 41 17628.5 42 18083.0 43 19134.5 44 20921.0 45 21608.0 46 21560.0 47 21873.5 48 21316.0 49 19832.0 50 19219.0 51 18384.5 52 16281.0 53 14066.5 54 13121.0 55 12383.0 56 10678.5 57 8857.5 58 8003.0 59 7145.5 60 5665.5 61 4577.0 62 4111.0 63 3824.0 64 3277.5 65 2860.0 66 2478.5 67 2255.0 68 2121.5 69 1884.5 70 1648.5 71 1516.0 72 1373.0 73 1177.0 74 1023.0 75 922.0 76 857.0 77 746.0 78 621.0 79 542.0 80 487.5 81 390.5 82 281.5 83 215.0 84 196.0 85 153.5 86 112.5 87 95.0 88 82.5 89 58.5 90 41.5 91 34.0 92 32.0 93 26.0 94 20.0 95 16.0 96 12.0 97 10.0 98 10.5 99 13.0 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.88475407471513E-4 2 0.0 3 2.88475407471513E-4 4 0.0 5 0.0 6 0.0020193278523005912 7 0.005192557334487234 8 0.002307803259772104 9 0.008654262224145393 10-11 0.0031732294821866435 12-13 1.442377037357565E-4 14-15 4.3271311120726956E-4 16-17 2.88475407471513E-4 18-19 0.0015866147410933218 20-21 0.0 22-23 0.001875090148564835 24-25 0.001875090148564835 26-27 2.88475407471513E-4 28-29 0.005913745853166018 30-31 5.76950814943026E-4 32-33 0.0 34-35 0.002740516370979374 36-37 0.01586614741093322 38-39 0.00793307370546661 40-41 0.0010096639261502956 42-43 0.0010096639261502956 44-45 0.0040386557046011825 46-47 0.002740516370979374 48-49 4.3271311120726956E-4 50-51 0.0020193278523005912 52-53 0.010096639261502957 54-55 0.008942737631616904 56-57 0.012692917928746574 58-59 0.011106303187653254 60-61 0.018895139189384104 62-63 0.009808163854031444 64-65 0.019039376893119863 66-67 0.01629886052214049 68-69 8.654262224145391E-4 70-71 5.76950814943026E-4 72-73 0.004615606519544208 74-75 0.008221549112938122 76 0.0031732294821866435 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 346650.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.92430140292862 #Duplication Level Percentage of deduplicated Percentage of total 1 77.37870129705084 44.04728514800505 2 8.801557387318145 10.02045011061742 3 5.1659197369458365 8.821991163877275 4 3.060841503639296 6.9694505719902615 5 1.7066533416714813 4.857502460581137 6 1.0282357381590277 3.5118960643336377 7 0.6073636423548333 2.4201625727010954 8 0.39635984313126016 1.805000573953709 9 0.2883214849364906 1.4771249198518264 >10 1.5369165929821171 14.985106105546524 >50 0.027568926535109676 0.9889814888092143 >100 0.0015605052755721979 0.09504881973285921 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0011539016298860523 0.0 2 0.0 0.0 0.0 0.0014423770373575653 0.0 3 0.0 0.0 0.0 0.0014423770373575653 0.0 4 0.0 0.0 0.0 0.0066349343718448 0.0 5 0.0 0.0 0.0 0.010673590076445983 0.0 6 0.0 0.0 0.0 0.010673590076445983 0.0 7 0.0 0.0 0.0 0.01125054089138901 0.0 8 0.0 0.0 0.0 0.01125054089138901 0.0 9 0.0 0.0 0.0 0.014712245781047165 0.0 10 0.0 0.0 0.0 0.015577672003461706 0.0 11 0.0 0.0 0.0 0.015577672003461706 0.0 12 0.0 0.0 0.0 0.016443098225876245 0.0 13 0.0 0.0 0.0 0.016731573633347756 0.0 14 0.0 0.0 0.0 0.018462426078176837 0.0 15 0.0 0.0 0.0 0.018462426078176837 0.0 16 0.0 0.0 0.0 0.020481753930477426 0.0 17 0.0 0.0 0.0 0.020481753930477426 0.0 18 0.0 0.0 0.0 0.02250108178277802 0.0 19 0.0 0.0 0.0 0.02365498341266407 0.0 20 0.0 0.0 0.0 0.025674311264964663 0.0 21 0.0 0.0 0.0 0.026828212894850715 0.0 22 0.0 0.0 0.0 0.037213327563825185 0.0 23 0.0 0.0 0.0 0.0375018029712967 0.0 24 0.0 0.0 0.0 0.04154045867589788 0.0 25 0.0 0.0 0.0 0.042117409490840904 0.0 26 0.0 0.0 0.0 0.04529063897302755 0.0 27 0.0 0.0 0.0 0.06057983556901774 0.0 28 0.0 0.0 0.0 0.08452329438915332 0.0 29 0.0 0.0 0.0 0.11135150728400404 0.0 30 0.0 0.0 0.0 0.14019904803115535 0.0 31 0.0 0.0 0.0 0.18808596567142652 0.0 32 0.0 0.0 0.0 0.22789557190249532 0.0 33 0.0 0.0 0.0 0.2870330304341555 0.0 34 0.0 0.0 0.0 0.36347901341410643 0.0 35 0.0 0.0 0.0 0.47396509447569596 0.0 36 0.0 0.0 0.0 0.674167027260926 0.0 37 0.0 0.0 0.0 0.9646617625847397 0.0 38 0.0 0.0 0.0 1.3310255300735612 0.0 39 0.0 0.0 0.0 1.7709505264676186 0.0 40 0.0 0.0 0.0 2.2953988172508293 0.0 41 0.0 0.0 0.0 2.958603779027838 0.0 42 0.0 0.0 0.0 3.723352084234819 0.0 43 0.0 0.0 0.0 4.466176258473965 0.0 44 0.0 0.0 0.0 5.209288908120583 0.0 45 0.0 0.0 0.0 5.989326409923554 0.0 46 0.0 0.0 0.0 6.731862108755228 0.0 47 0.0 0.0 0.0 7.429107168613876 0.0 48 0.0 0.0 0.0 8.16962353959325 0.0 49 0.0 0.0 0.0 8.775421895283428 0.0 50 0.0 0.0 0.0 9.487956151738064 0.0 51 0.0 0.0 0.0 10.1944324246358 0.0 52 0.0 0.0 0.0 10.965527188807155 0.0 53 0.0 0.0 0.0 11.695658445117553 0.0 54 0.0 0.0 0.0 12.328285013702581 0.0 55 0.0 0.0 0.0 13.03706908986009 0.0 56 0.0 0.0 0.0 13.665657002740517 0.0 57 0.0 0.0 0.0 14.247511899610558 0.0 58 0.0 0.0 0.0 14.802538583585749 0.0 59 0.0 0.0 0.0 15.336218087408048 0.0 60 0.0 0.0 0.0 15.908264820424058 0.0 61 0.0 0.0 0.0 16.46906101254868 0.0 62 0.0 0.0 0.0 17.035915188230202 0.0 63 0.0 0.0 0.0 17.625270445694504 0.0 64 0.0 0.0 0.0 18.204529063897304 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTGC 30 8.367799E-6 58.333332 15 TGGACGC 20 0.006943998 52.507576 49 GCGCATT 20 0.0069479616 52.5 44 GTGTCGA 20 0.0069479616 52.5 36 GCGTCGG 20 0.0069479616 52.5 36 CTCGGTG 205 0.0 44.390244 44 TGGTCGC 155 0.0 42.909416 49 CGGTGGT 190 0.0 42.36842 46 GTAGATC 290 0.0 41.03448 38 GATCTCG 205 0.0 40.97561 41 ACGAATA 60 2.5928057E-7 40.833332 24 ATCTCGG 245 0.0 40.0 42 AGTTTCG 35 0.0012545558 40.0 37 GACGTAA 35 0.0012545558 40.0 68 TAGATCT 245 0.0 40.0 39 TGGGATA 35 0.0012545558 40.0 61 GACGAAT 70 1.9215804E-8 40.0 23 AGATCTC 275 0.0 39.454548 40 GTCGCCG 160 0.0 39.38068 51 TCGGTGG 240 0.0 39.375 45 >>END_MODULE