SRR1779864_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779864_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	346650
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT	31014	8.946776287321507	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG	3752	1.082359728833117	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC	2154	0.6213760276936391	No Hit
ATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCTT	848	0.24462714553584305	TruSeq Adapter, Index 12 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC	676	0.19500937545074282	No Hit
CTTATACACATCTCCGAGCCCACGAGACTACTTGAAACCTCGTATGCCGT	381	0.10990913024664647	No Hit
CTTATACACATCTCCGAGCCCACGAGACTACTTGAAAACTCGTATGCCGT	376	0.10846675320928892	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAAGT	15	0.0022256628	69.98356	12
TCTCGTA	4545	0.0	54.123695	38
ATCTCGT	4565	0.0	54.03988	37
AATCTCG	4560	0.0	53.71545	36
CCGTCTT	4750	0.0	53.65272	47
TGCCGTC	4785	0.0	53.610607	45
CGTATGC	4765	0.0	53.60755	41
TATGCCG	4765	0.0	53.60755	43
ATGCCGT	4770	0.0	53.55136	44
TCGTATG	4780	0.0	53.51253	40
CGTCTTC	4745	0.0	53.495647	48
GCCGTCT	4785	0.0	53.47976	46
CTCGTAT	4740	0.0	53.44736	39
CTGCTTG	4780	0.0	53.258125	54
GTCTTCT	4805	0.0	52.90815	49
TCTTCTG	4810	0.0	52.853153	50
GTATGCC	4830	0.0	52.741234	42
GATGGTC	20	0.006934604	52.525547	66
ATCCGAA	20	0.0069425255	52.51039	46
CGGCATG	20	0.0069544204	52.487667	34