FastQCFastQC Report
Wed 25 May 2016
SRR1779862_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779862_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84075
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCATTGT150.002218240469.99583431
ACGAGCG150.002218240469.99583424
AGTACTA150.002218240469.99583440
TGGTCTT150.002218240469.99583412
TGGTCTA207.888332E-569.99583434
GACGAAT750.060.6630623
TTCCGAC352.9438706E-759.99642619
AGATCTC1350.057.0336440
CACTTAG252.3789634E-455.9966752
CGAATAG700.054.99672725
CGTATCA653.6379788E-1253.84295356
CTTGTCA200.00693138352.4968761
GGCACCG200.00693138352.49687612
AACTTGT200.00693138352.49687624
TATTGGT200.00693138352.49687631
GTTCGCC200.00693138352.49687650
CGAGCGA200.00693138352.49687625
ATTGGTC200.00693138352.49687632
GGTCTAT200.00693138352.49687635
TTCGCCG200.00693138352.49687651
Produced by FastQC (version 0.11.5)