##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779862_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 84075 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.189616413916145 27.0 12.0 34.0 12.0 34.0 2 25.438382396669642 31.0 12.0 34.0 12.0 34.0 3 25.352566161165626 31.0 11.0 34.0 11.0 34.0 4 26.006743978590546 32.0 21.0 34.0 12.0 34.0 5 25.15110318168302 32.0 11.0 34.0 11.0 34.0 6 28.089253642581028 34.0 21.0 38.0 11.0 38.0 7 28.283520666071958 34.0 21.0 38.0 12.0 38.0 8 27.947915551590842 34.0 21.0 38.0 11.0 38.0 9 28.376616116562595 34.0 21.0 38.0 11.0 38.0 10-11 27.283788284269995 32.0 11.5 38.0 11.0 38.0 12-13 27.668581623550402 34.0 16.0 38.0 11.0 38.0 14-15 26.811239964317572 29.5 11.0 37.5 11.0 38.0 16-17 27.084388938447816 32.5 11.0 38.0 11.0 38.0 18-19 27.440564971751414 34.0 11.0 38.0 11.0 38.0 20-21 26.907665774606006 30.5 16.0 38.0 11.0 38.0 22-23 27.40885518881951 32.5 11.0 38.0 11.0 38.0 24-25 27.663728813559324 34.0 16.0 38.0 11.0 38.0 26-27 26.77391614629795 31.0 11.0 38.0 11.0 38.0 28-29 27.329360689860245 33.5 11.0 38.0 11.0 38.0 30-31 27.581671126969965 34.0 11.0 38.0 11.0 38.0 32-33 27.782384775498066 34.0 11.0 38.0 11.0 38.0 34-35 27.78841510556051 34.0 11.0 38.0 11.0 38.0 36-37 27.431727624145108 33.5 11.0 38.0 11.0 38.0 38-39 27.32337793636634 33.5 11.0 38.0 11.0 38.0 40-41 27.31859649122807 33.5 11.0 38.0 11.0 38.0 42-43 27.601326196848053 34.0 11.0 38.0 11.0 38.0 44-45 27.665322628605413 34.0 11.0 38.0 11.0 38.0 46-47 27.54271186440678 34.0 11.0 38.0 11.0 38.0 48-49 27.25845970859352 33.5 11.0 38.0 11.0 38.0 50-51 26.871097234611952 32.5 11.0 38.0 11.0 38.0 52-53 27.3302111210229 33.5 11.0 38.0 11.0 38.0 54-55 27.359435028248587 33.5 11.0 38.0 11.0 38.0 56-57 27.41766874814154 34.0 11.0 38.0 11.0 38.0 58-59 27.383990484686294 34.0 11.0 38.0 11.0 38.0 60-61 27.470217068093962 34.0 11.0 38.0 11.0 38.0 62-63 27.337329765090693 34.0 11.0 38.0 11.0 38.0 64-65 27.315194766577463 33.5 11.0 38.0 11.0 38.0 66-67 27.469824561403506 33.5 11.0 38.0 11.0 38.0 68-69 27.08470413321439 31.5 11.0 38.0 11.0 38.0 70-71 27.09941123996432 32.0 11.0 38.0 11.0 38.0 72-73 27.201278620279513 32.0 11.0 38.0 11.0 38.0 74-75 27.311650312221232 32.5 11.0 38.0 11.0 38.0 76 26.355515908415107 31.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 58.0 13 655.0 14 2076.0 15 3728.0 16 4926.0 17 5786.0 18 5965.0 19 5108.0 20 4016.0 21 2757.0 22 2001.0 23 1402.0 24 1077.0 25 989.0 26 931.0 27 943.0 28 980.0 29 1084.0 30 1274.0 31 1486.0 32 1913.0 33 2473.0 34 3245.0 35 4938.0 36 8272.0 37 15990.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.110949877488878 20.285700692247303 16.585389062016795 35.01796036824702 2 21.571216176033303 21.099018733273862 32.504311626523936 24.8254534641689 3 14.510853404698187 28.40321141837645 32.32827832292596 24.757656853999404 4 11.664585191793043 29.215581326196848 24.23312518584597 34.88670829616414 5 19.787094855783526 30.88670829616414 29.721082366934287 19.60511448111805 6 21.988962104812426 44.058805338154485 13.34181792230654 20.610414634726553 7 19.90769377170862 35.26906789741638 15.378027311224246 29.445211019650756 8 17.14384270438082 45.95877294191814 14.414007208193075 22.483377145507962 9 20.37303579287949 22.3309978945365 15.601841388416382 41.69412492416763 10-11 19.0090459792674 31.97732855163226 21.38502804194099 27.628597427159345 12-13 18.73446327683616 24.87481415402914 24.24382991376747 32.14689265536723 14-15 25.789473684210527 27.574189711567055 19.009812667261375 27.626523936961046 16-17 27.085501549221224 26.029295446300605 18.706623292437065 28.178579712041106 18-19 20.588899990484347 25.445451517746694 23.141473974688363 30.8241745170806 20-21 25.11448111804936 24.64942016057092 20.458519179304194 29.77757954207553 22-23 27.330577775134557 24.325433405691516 18.76654078325255 29.57744803592138 24-25 20.295931536096393 30.626178284477273 18.73836583465658 30.339524344769753 26-27 23.951066626225863 30.60833675296021 19.9075808667416 25.53301575407233 28-29 21.18829546806233 28.827167836326872 23.01237064351136 26.97216605209944 30-31 22.07433838834374 27.35831103181683 22.95153137079988 27.61581920903955 32-33 19.321439191198333 29.559916741005054 22.840915848944395 28.277728218852218 34-35 18.845751260824056 31.73351413074508 22.10367304215434 27.317061566276525 36-37 23.722905612791166 25.75602560137048 22.8366128149611 27.684455970877252 38-39 24.2064129329265 23.92983958745963 24.896954124511534 26.966793355102332 40-41 20.52299165021291 28.411875252753525 23.158764897590217 27.90636819944335 42-43 17.098525712314675 27.40605058608734 24.836900606010147 30.658523095587842 44-45 16.801574887444318 24.488667114708665 28.136839162835507 30.57291883501151 46-47 19.054359462352803 26.825859402878553 25.007136909718092 29.112644225050555 48-49 19.738923580136785 27.625334522747547 23.892358013678265 28.743383883437406 50-51 24.914509328147393 26.855667957204115 20.698555430664836 27.531267283983656 52-53 15.395276077633637 30.091064280318573 23.52801222914176 30.985647412906026 54-55 17.84182760076844 26.28633284364164 23.267294344358337 32.60454521123158 56-57 19.685479601972293 28.048700700057694 21.493020240410637 30.772799457559373 58-59 18.351930717803526 28.217863005876616 22.411434417453783 31.018771858866074 60-61 16.064980875730917 26.340334659837843 23.496975212805822 34.09770925162541 62-63 18.672122664795133 26.79723790094746 22.269274919260347 32.261364514997055 64-65 18.988930459971805 26.148145063913063 21.648951040631932 33.213973435483204 66-67 16.875747247452665 32.10799621692036 19.139051969759155 31.877204565867817 68-69 17.772332871441403 33.95797774592772 18.29270468453574 29.976984698095144 70-71 16.578351085657193 33.98098092740281 19.994409653457986 29.44625833348201 72-73 16.02038752958809 31.560228854182775 20.005114724459087 32.41426889177006 74-75 15.93590902602655 29.91566351049151 19.004258457439217 35.14416900604272 76 14.96473219064838 28.889866898216983 20.648023694258423 35.49737721687622 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 3.0 12 6.0 13 3.0 14 2.0 15 5.5 16 11.0 17 15.0 18 21.0 19 31.0 20 45.5 21 56.0 22 77.0 23 111.5 24 154.5 25 184.0 26 212.0 27 298.5 28 399.5 29 442.0 30 545.0 31 708.5 32 894.0 33 1019.0 34 1139.0 35 1430.5 36 1753.0 37 1904.0 38 2074.0 39 2511.5 40 2912.5 41 3242.5 42 3439.0 43 3721.0 44 4123.0 45 4365.5 46 4488.0 47 4614.0 48 4798.5 49 4759.5 50 4662.0 51 4610.5 52 4364.0 53 4030.5 54 3892.0 55 3698.5 56 3330.0 57 2945.5 58 2736.0 59 2595.5 60 2313.0 61 1914.5 62 1658.0 63 1526.5 64 1317.0 65 1165.0 66 968.0 67 845.0 68 758.5 69 609.5 70 513.5 71 480.0 72 431.5 73 360.0 74 325.0 75 313.0 76 271.0 77 221.0 78 196.0 79 179.0 80 158.5 81 118.5 82 99.5 83 100.0 84 76.5 85 48.5 86 37.5 87 31.0 88 27.0 89 22.0 90 14.5 91 9.5 92 11.0 93 9.5 94 7.5 95 4.5 96 2.0 97 2.5 98 3.5 99 3.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0011894142134998514 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0011894142134998514 7 0.008325899494498959 8 0.004757656853999406 9 0.009515313707998812 10-11 0.0053523639607493305 12-13 0.0 14-15 0.0 16-17 5.947071067499257E-4 18-19 0.003568242640499554 20-21 0.0 22-23 0.0029735355337496285 24-25 0.001784121320249777 26-27 0.001784121320249777 28-29 0.005947071067499257 30-31 0.0 32-33 0.0 34-35 0.003568242640499554 36-37 0.020220041629497473 38-39 0.012488849241748439 40-41 0.0011894142134998514 42-43 5.947071067499257E-4 44-45 0.006541778174249183 46-47 0.005947071067499257 48-49 0.0 50-51 0.001784121320249777 52-53 0.016057091882247992 54-55 0.010110020814748736 56-57 0.012488849241748439 58-59 0.015462384775498066 60-61 0.0231935771632471 62-63 0.010110020814748736 64-65 0.018435920309247695 66-67 0.019625334522747548 68-69 5.947071067499257E-4 70-71 0.001784121320249777 72-73 0.004757656853999406 74-75 0.008325899494498959 76 0.004757656853999406 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 84075.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.25245316681534 #Duplication Level Percentage of deduplicated Percentage of total 1 88.74006411663959 72.1034790365745 2 5.2230175808411285 8.487659827534939 3 2.952585891411591 7.197145405887601 4 1.572175135040183 5.109723461195361 5 0.8417138758362244 3.4195658638120725 6 0.3923118586506229 1.912578055307761 7 0.18005357691800974 1.024085637823372 8 0.04537935678421384 0.2949747249479631 9 0.026349303939220938 0.1926851025869759 >10 0.026349303939220938 0.25810288432946776 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.004757656853999405 0.0 2 0.0 0.0 0.0 0.004757656853999405 0.0 3 0.0 0.0 0.0 0.004757656853999405 0.0 4 0.0 0.0 0.0 0.004757656853999405 0.0 5 0.0 0.0 0.0 0.005947071067499257 0.0 6 0.0 0.0 0.0 0.005947071067499257 0.0 7 0.0 0.0 0.0 0.005947071067499257 0.0 8 0.0 0.0 0.0 0.005947071067499257 0.0 9 0.0 0.0 0.0 0.005947071067499257 0.0 10 0.0 0.0 0.0 0.00951531370799881 0.0 11 0.0 0.0 0.0 0.00951531370799881 0.0 12 0.0 0.0 0.0 0.00951531370799881 0.0 13 0.0 0.0 0.0 0.013083556348498365 0.0 14 0.0 0.0 0.0 0.013083556348498365 0.0 15 0.0 0.0 0.0 0.013083556348498365 0.0 16 0.0 0.0 0.0 0.015462384775498068 0.0 17 0.0 0.0 0.0 0.015462384775498068 0.0 18 0.0 0.0 0.0 0.01903062741599762 0.0 19 0.0 0.0 0.0 0.028545941123996433 0.0 20 0.0 0.0 0.0 0.030924769550996135 0.0 21 0.0 0.0 0.0 0.032114183764495985 0.0 22 0.0 0.0 0.0 0.07612250966399048 0.0 23 0.0 0.0 0.0 0.07731192387749034 0.0 24 0.0 0.0 0.0 0.088016651798989 0.0 25 0.0 0.0 0.0 0.09396372286648826 0.0 26 0.0 0.0 0.0 0.09396372286648826 0.0 27 0.0 0.0 0.0 0.11537317870948557 0.0 28 0.0 0.0 0.0 0.15462384775498067 0.0 29 0.0 0.0 0.0 0.18673803151947665 0.0 30 0.0 0.0 0.0 0.21647338685697295 0.0 31 0.0 0.0 0.0 0.24977698483496877 0.0 32 0.0 0.0 0.0 0.28783823966696404 0.0 33 0.0 0.0 0.0 0.3294677371394588 0.0 34 0.0 0.0 0.0 0.407969075230449 0.0 35 0.0 0.0 0.0 0.4888492417484389 0.0 36 0.0 0.0 0.0 0.6732084448409158 0.0 37 0.0 0.0 0.0 0.9669937555753791 0.0 38 0.0 0.0 0.0 1.328575676479334 0.0 39 0.0 0.0 0.0 1.6984834968777878 0.0 40 0.0 0.0 0.0 2.143324412726732 0.0 41 0.0 0.0 0.0 2.6523936961046686 0.0 42 0.0 0.0 0.0 3.2256913470115967 0.0 43 0.0 0.0 0.0 3.7966101694915255 0.0 44 0.0 0.0 0.0 4.4793339280404405 0.0 45 0.0 0.0 0.0 5.016949152542373 0.0 46 0.0 0.0 0.0 5.625929229854297 0.0 47 0.0 0.0 0.0 6.069580731489741 0.0 48 0.0 0.0 0.0 6.570324115373179 0.0 49 0.0 0.0 0.0 7.036574487065121 0.0 50 0.0 0.0 0.0 7.43859649122807 0.0 51 0.0 0.0 0.0 7.916741005055011 0.0 52 0.0 0.0 0.0 8.47695509961344 0.0 53 0.0 0.0 0.0 9.075230449003866 0.0 54 0.0 0.0 0.0 9.6068986024383 0.0 55 0.0 0.0 0.0 10.006541778174249 0.0 56 0.0 0.0 0.0 10.488254534641689 0.0 57 0.0 0.0 0.0 10.916443651501636 0.0 58 0.0 0.0 0.0 11.294677371394588 0.0 59 0.0 0.0 0.0 11.574189711567053 0.0 60 0.0 0.0 0.0 11.935771632471008 0.0 61 0.0 0.0 0.0 12.299732381801963 0.0 62 0.0 0.0 0.0 12.655367231638419 0.0 63 0.0 0.0 0.0 13.001486767766874 0.0 64 0.0 0.0 0.0 13.418971156705323 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCATTGT 15 0.0022182404 69.995834 31 ACGAGCG 15 0.0022182404 69.995834 24 AGTACTA 15 0.0022182404 69.995834 40 TGGTCTT 15 0.0022182404 69.995834 12 TGGTCTA 20 7.888332E-5 69.995834 34 GACGAAT 75 0.0 60.66306 23 TTCCGAC 35 2.9438706E-7 59.996426 19 AGATCTC 135 0.0 57.03364 40 CACTTAG 25 2.3789634E-4 55.99667 52 CGAATAG 70 0.0 54.996727 25 CGTATCA 65 3.6379788E-12 53.842953 56 CTTGTCA 20 0.006931383 52.496876 1 GGCACCG 20 0.006931383 52.496876 12 AACTTGT 20 0.006931383 52.496876 24 TATTGGT 20 0.006931383 52.496876 31 GTTCGCC 20 0.006931383 52.496876 50 CGAGCGA 20 0.006931383 52.496876 25 ATTGGTC 20 0.006931383 52.496876 32 GGTCTAT 20 0.006931383 52.496876 35 TTCGCCG 20 0.006931383 52.496876 51 >>END_MODULE