##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779862_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 84075 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.56767172167707 34.0 34.0 34.0 34.0 34.0 2 33.65423728813559 34.0 34.0 34.0 34.0 34.0 3 33.77191793041927 34.0 34.0 34.0 34.0 34.0 4 33.57482010110021 34.0 34.0 34.0 34.0 34.0 5 33.63094855783527 34.0 34.0 34.0 34.0 34.0 6 37.36205768658935 38.0 38.0 38.0 37.0 38.0 7 37.38684507879869 38.0 38.0 38.0 37.0 38.0 8 37.32234314600059 38.0 38.0 38.0 37.0 38.0 9 37.22246803449301 38.0 38.0 38.0 36.0 38.0 10-11 37.18124888492417 38.0 38.0 38.0 36.5 38.0 12-13 37.3390484686292 38.0 38.0 38.0 36.5 38.0 14-15 37.356901575973836 38.0 38.0 38.0 37.0 38.0 16-17 37.1623966696402 38.0 38.0 38.0 36.0 38.0 18-19 36.99386856972941 38.0 38.0 38.0 35.5 38.0 20-21 37.090282485875704 38.0 38.0 38.0 35.5 38.0 22-23 37.124406779661015 38.0 38.0 38.0 36.0 38.0 24-25 37.256669640202205 38.0 38.0 38.0 36.0 38.0 26-27 37.119209039548025 38.0 38.0 38.0 36.0 38.0 28-29 36.64542372881356 38.0 37.0 38.0 34.0 38.0 30-31 37.00290217068094 38.0 37.0 38.0 35.5 38.0 32-33 36.88718406184954 38.0 37.5 38.0 35.5 38.0 34-35 36.79191793041927 38.0 37.0 38.0 35.0 38.0 36-37 36.655052036871844 38.0 37.0 38.0 34.0 38.0 38-39 35.23510556051144 38.0 36.0 38.0 29.0 38.0 40-41 36.32846268212905 38.0 37.0 38.0 34.0 38.0 42-43 37.105869759143616 38.0 37.5 38.0 36.0 38.0 44-45 36.87190603627714 38.0 37.5 38.0 35.0 38.0 46-47 37.04017841213202 38.0 38.0 38.0 36.0 38.0 48-49 36.61769848349688 38.0 37.0 38.0 34.0 38.0 50-51 36.698792744573296 38.0 37.0 38.0 34.0 38.0 52-53 36.63004460303301 38.0 37.0 38.0 34.0 38.0 54-55 36.656669640202196 38.0 37.0 38.0 34.0 38.0 56-57 36.47992863514719 38.0 37.0 38.0 34.0 38.0 58-59 36.52483496877788 38.0 37.0 38.0 34.0 38.0 60-61 36.080053523639606 38.0 37.0 38.0 33.5 38.0 62-63 36.01123401724651 38.0 37.0 38.0 33.0 38.0 64-65 36.52994944989592 38.0 37.0 38.0 34.0 38.0 66-67 36.14221231043711 38.0 37.0 38.0 32.5 38.0 68-69 36.03341659232828 38.0 37.0 38.0 32.0 38.0 70-71 33.40982456140351 37.5 31.0 38.0 21.0 38.0 72-73 28.777639012786203 35.0 21.5 38.0 11.0 38.0 74-75 28.0709426107642 34.0 19.0 38.0 11.0 38.0 76 28.048409158489445 34.0 19.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 22 4.0 23 5.0 24 16.0 25 38.0 26 92.0 27 208.0 28 385.0 29 689.0 30 1098.0 31 1644.0 32 2626.0 33 4267.0 34 7563.0 35 17376.0 36 17978.0 37 30086.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.66829314735915 12.005807726179992 12.046271392188132 54.27962773427273 2 10.56318763009218 11.60035682426405 59.12578055307761 18.71067499256616 3 11.35890573892358 13.001486767766876 57.91138864109426 17.72821885221528 4 8.09277430865299 44.73624739815641 29.021706809396374 18.149271483794234 5 8.0035682426405 25.478441867380315 57.449895926256325 9.068093963722866 6 16.519774011299436 58.62384775498067 15.129348795718109 9.727029438001784 7 14.702349093071662 22.994944989592625 15.75617008623253 46.54653583110318 8 13.401129943502823 58.15997621171572 12.016651798988997 16.422242045792448 9 13.799583705025276 14.830805828129645 11.477847160273564 59.89176330657151 10-11 14.672019030627418 35.69313113291704 32.15997621171573 17.474873624739814 12-13 14.274159976211715 13.932203389830509 36.344930121914956 35.44870651204282 14-15 13.6092774308653 12.913470115967888 16.96104668450788 56.516205768658935 16-17 34.0011894142135 32.28962236098722 12.8111804936069 20.89800773119239 18-19 35.599762117157304 19.04965804341362 13.271483794231342 32.079096045197744 20-21 15.013975617008624 14.212310437109723 13.336306868867082 57.43740707701457 22-23 13.75914362176628 34.79631281593815 13.42789176330657 38.016651798988995 24-25 34.07195955991674 34.40440083258995 13.27505203687184 18.24858757062147 26-27 35.37674695212608 36.43592030924769 14.570324115373179 13.61700862325305 28-29 14.774903360095154 18.314600059470713 32.802854594112404 34.10764198632174 30-31 13.495688373476064 13.718703538507285 57.35176925364258 15.43383883437407 32-33 30.87065120428189 14.151055605114482 20.938447814451383 34.03984537615224 34-35 17.284567350579838 14.501932798096936 34.994350282485875 33.219149568837345 36-37 12.820101100208149 51.75854891465953 16.914064823074636 18.507285162057688 38-39 13.220933690157596 20.453761522450193 34.24739815640797 32.07790663098424 40-41 13.066904549509367 13.914362176628012 37.26672613737734 35.75200713648528 42-43 33.425117009319116 13.20079215457719 35.191407620622186 18.182683215481507 44-45 14.657151352958667 32.97056199821588 37.85429675884627 14.517989889979185 46-47 32.889087124591136 14.663098424026167 20.525126375260182 31.92268807612251 48-49 31.76449598572703 12.71008028545941 16.3883437407077 39.13707998810586 50-51 16.083674841042782 13.006834119445418 36.62826315820779 34.28122788130402 52-53 11.657803000559184 13.36866902237927 56.17244292155953 18.801085055502018 54-55 11.51049600152323 13.447258187357198 40.3173790936786 34.724866717440975 56-57 31.459036194760298 13.219447469103848 20.920131141298203 34.40138519483765 58-59 13.239257307053917 14.395773717807616 53.51446537887215 18.850503596266307 60-61 31.326591314693637 32.59131469363474 21.15466983938132 14.927424152290303 62-63 12.855596140346703 57.96916084664898 14.182203238587016 14.993039774417305 64-65 11.15737381187471 60.41089209026779 13.299865573809496 15.131868524048011 66-67 11.072903156717395 60.2709327368133 13.171828706733457 15.48433539973585 68-69 11.16886824434836 59.92970018496821 13.26180436191915 15.639627208764281 70-71 11.460520446096654 56.41695167286246 13.804014869888476 18.318513011152415 72-73 13.14651454676319 47.04395257951497 15.70312825302029 24.106404620701554 74-75 14.106430181586758 42.94559534643042 17.170149111694 25.777825360288826 76 13.716603620964479 43.84412247519806 16.658339875811862 25.780934028025598 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 4.0 15 5.5 16 5.0 17 7.0 18 16.0 19 53.5 20 82.5 21 83.0 22 94.5 23 115.0 24 138.0 25 152.0 26 189.0 27 310.5 28 410.0 29 425.0 30 477.5 31 597.5 32 778.5 33 892.0 34 924.0 35 1085.0 36 1315.0 37 1416.0 38 1608.5 39 6002.0 40 12156.0 41 12760.5 42 11412.0 43 9454.0 44 5859.0 45 3565.0 46 2908.0 47 2603.0 48 2228.0 49 2049.5 50 1941.0 51 1863.5 52 1745.0 53 1655.5 54 1607.0 55 1601.0 56 1496.5 57 1400.0 58 1402.0 59 1367.0 60 1199.0 61 976.0 62 886.0 63 825.5 64 742.0 65 660.5 66 551.5 67 501.0 68 483.5 69 427.0 70 359.0 71 330.0 72 324.5 73 303.5 74 267.5 75 247.0 76 222.0 77 178.5 78 153.0 79 146.0 80 107.5 81 72.5 82 69.5 83 63.0 84 54.0 85 33.5 86 19.5 87 17.0 88 17.0 89 10.5 90 2.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.058281296461492715 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 5.947071067499257E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.013678263455248292 52-53 0.028545941123996433 54-55 0.051144811180493605 56-57 0.05173951828724353 58-59 0.03508771929824561 60-61 0.02973535533749628 62-63 0.030924769550996132 64-65 0.016651798988997917 66-67 0.038061254831995246 68-69 0.007731192387749033 70-71 0.01486767766874814 72-73 0.02200416294974725 74-75 0.012488849241748439 76 0.010704727921498661 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 84075.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.454653583110318 #Duplication Level Percentage of deduplicated Percentage of total 1 42.194256569464464 9.05263157894737 2 17.823483756514026 7.6479333928040445 3 13.926155893114537 8.96342551293488 4 10.15633662268544 8.71602735652691 5 6.879920168533096 7.3803151947665775 6 3.9361348264774367 5.066904549509366 7 2.2618915622574565 3.3969669937555755 8 1.1586650404701186 1.9887005649717515 9 0.5765605943009203 1.113291703835861 >10 0.9479986694755517 3.134106452572108 >50 0.03880696307794655 0.5126375260184359 >100 0.07207007428761504 2.617900683913173 >500 0.011087703736556159 1.4451382694023194 >1k 0.011087703736556159 6.763009217960154 >5k 0.0 0.0 >10k+ 0.0055438518682780795 32.20101100208147 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT 27073 32.20101100208147 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 3563 4.23788284269997 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 2123 2.5251263752601845 No Hit ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT 666 0.7921498661909009 RNA PCR Primer, Index 48 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 549 0.6529884032114184 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT 303 0.360392506690455 No Hit CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 300 0.35682426404995543 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAACTCGTATGCCGT 245 0.2914064823074636 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT 195 0.23193577163247103 No Hit CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 184 0.21885221528397267 RNA PCR Primer, Index 48 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACTTTCGTCATCTCGTATGCCGTC 159 0.18911685994647637 No Hit CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 153 0.18198037466547726 No Hit CCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 131 0.15581326196848053 No Hit CTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 110 0.13083556348498365 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAGCTCGTATGCCGT 108 0.12845673505798394 No Hit TCTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 105 0.12488849241748438 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCG 104 0.12369907820398453 No Hit TATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCT 104 0.12369907820398453 RNA PCR Primer, Index 48 (95% over 22bp) TTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 90 0.10704727921498662 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.005947071067499257 0.0 2 0.0 0.0 0.0 0.005947071067499257 0.0 3 0.0 0.0 0.0 0.005947071067499257 0.0 4 0.0 0.0 0.0 0.005947071067499257 0.0 5 0.0 0.0 0.0 0.007136485280999108 0.0 6 0.0 0.0 0.0 0.007136485280999108 0.0 7 0.0 0.0 0.0 0.007136485280999108 0.0 8 0.0 0.0 0.0 0.007136485280999108 0.0 9 0.0 0.0 0.0 0.008325899494498959 0.0 10 0.0 0.0 0.0 0.011894142134998514 0.0 11 0.0 0.0 0.0 0.013083556348498365 0.0 12 0.0 0.0 0.0 0.013083556348498365 0.0 13 0.0 0.0 0.0 0.020220041629497473 0.0 14 0.0 0.0 0.0 0.020220041629497473 0.0 15 0.0 0.0 0.0 0.020220041629497473 0.0 16 0.0 0.0 0.0 0.022598870056497175 0.0 17 0.0 0.0 0.0 0.022598870056497175 0.0 18 0.0 0.0 0.0 0.029735355337496282 0.0 19 0.0 0.0 0.0 0.039250669045495096 0.0 20 0.0 0.0 0.0 0.041629497472494795 0.0 21 0.0 0.0 0.0 0.041629497472494795 0.0 22 0.0 0.0 0.0 0.042818911685994644 0.0 23 0.0 0.0 0.0 0.0440083258994945 0.0 24 0.0 0.0 0.0 0.047576568539994056 0.0 25 0.0 0.0 0.0 0.05471305382099316 0.0 26 0.0 0.0 0.0 0.05471305382099316 0.0 27 0.0 0.0 0.0 0.07612250966399048 0.0 28 0.0 0.0 0.0 0.11775200713648529 0.0 29 0.0 0.0 0.0 0.15105560511448113 0.0 30 0.0 0.0 0.0 0.1855486173059768 0.0 31 0.0 0.0 0.0 0.2224204579244722 0.0 32 0.0 0.0 0.0 0.2604817127564674 0.0 33 0.0 0.0 0.0 0.3044900386559619 0.0 34 0.0 0.0 0.0 0.39012786202795124 0.0 35 0.0 0.0 0.0 0.48052334225393994 0.0 36 0.0 0.0 0.0 0.6779661016949152 0.0 37 0.0 0.0 0.0 1.032411537317871 0.0 38 0.0 0.0 0.0 1.4023193577163247 0.0 39 0.0 0.0 0.0 1.7888789771037763 0.0 40 0.0 0.0 0.0 2.257508177222718 0.0 41 0.0 0.0 0.0 2.7867975022301517 0.0 42 0.0 0.0 0.0 3.399345822182575 0.0 43 0.0 0.0 0.0 4.0011894142135 0.0 44 0.0 0.0 0.0 4.712459113886411 0.0 45 0.0 0.0 0.0 5.272673208444841 0.0 46 0.0 0.0 0.0 5.906630984240262 0.0 47 0.0 0.0 0.0 6.375260184359203 0.0 48 0.0 0.0 0.0 6.9104965804341365 0.0 49 0.0 0.0 0.0 7.402914064823075 0.0 50 0.0 0.0 0.0 7.816830211121023 0.0 51 0.0 0.0 0.0 8.30805828129646 0.0 52 0.0 0.0 0.0 8.867082961641392 0.0 53 0.0 0.0 0.0 9.468926553672317 0.0 54 0.0 0.0 0.0 9.980374665477253 0.0 55 0.0 0.0 0.0 10.370502527505204 0.0 56 0.0 0.0 0.0 10.858162355040143 0.0 57 0.0 0.0 0.0 11.293487957181089 0.0 58 0.0 0.0 0.0 11.67528991971454 0.0 59 0.0 0.0 0.0 11.964317573595004 0.0 60 0.0 0.0 0.0 12.31995242343146 0.0 61 0.0 0.0 0.0 12.693428486470413 0.0 62 0.0 0.0 0.0 13.060957478441868 0.0 63 0.0 0.0 0.0 13.423728813559322 0.0 64 0.0 0.0 0.0 13.865001486767767 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTTGCA 15 0.0022093463 70.0667 52 CTTGACA 15 0.002214574 70.025 57 TAATACA 15 0.002219811 69.983345 3 GTCGATC 25 2.8221184E-6 69.983345 33 TATGCAG 15 0.002219811 69.983345 43 GACCACT 15 0.002219811 69.983345 44 ATATCAA 15 0.002219811 69.983345 6 TCGTCCA 25 2.8221184E-6 69.983345 31 CGTCGAT 25 2.8221184E-6 69.983345 32 AAGATGC 15 0.002219811 69.983345 30 TCGATCT 35 2.9475086E-7 59.98572 34 TTCGTCG 30 8.324725E-6 58.31945 30 TTCGTCC 30 8.324725E-6 58.31945 30 TCGTCGA 30 8.324725E-6 58.31945 31 GTCCATC 30 8.324725E-6 58.31945 33 CGTCCAT 30 8.324725E-6 58.31945 32 TTGCATC 25 2.3670818E-4 56.053368 54 CATATTT 25 2.3740638E-4 56.02 58 CGAGACG 25 2.3810621E-4 55.986675 23 AATCTCG 3725 0.0 54.01399 36 >>END_MODULE