##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779861_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 206969 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.485589629364785 34.0 23.0 34.0 12.0 34.0 2 29.10491909416386 34.0 24.0 34.0 12.0 34.0 3 28.808222487425653 34.0 23.0 34.0 11.0 34.0 4 29.183037073184874 34.0 24.0 34.0 12.0 34.0 5 29.49730152824819 34.0 31.0 34.0 11.0 34.0 6 32.00017877073378 37.0 28.0 38.0 12.0 38.0 7 32.16185998869396 37.0 31.0 38.0 12.0 38.0 8 31.492817764979296 37.0 27.0 38.0 11.0 38.0 9 32.48595683411526 37.0 31.0 38.0 12.0 38.0 10-11 31.09655069116631 36.5 26.0 38.0 11.0 38.0 12-13 31.907176920215104 37.0 29.5 38.0 11.0 38.0 14-15 30.755190390831476 36.5 25.5 38.0 11.0 38.0 16-17 31.336142127564997 37.0 28.0 38.0 11.0 38.0 18-19 32.16042499118225 37.0 31.0 38.0 11.0 38.0 20-21 30.96200880325073 36.5 26.5 38.0 11.0 38.0 22-23 31.800530514231596 37.0 29.0 38.0 11.0 38.0 24-25 32.12672187622301 37.0 31.0 38.0 11.0 38.0 26-27 31.040387690910233 37.0 26.0 38.0 11.0 38.0 28-29 32.212092149065796 37.0 31.0 38.0 11.0 38.0 30-31 32.62132010107794 38.0 32.5 38.0 11.0 38.0 32-33 32.72976387768216 38.0 33.5 38.0 11.0 38.0 34-35 32.64265421391609 38.0 33.0 38.0 11.0 38.0 36-37 32.16643555315047 37.5 29.0 38.0 11.0 38.0 38-39 32.09404548507264 37.0 29.0 38.0 11.0 38.0 40-41 32.06267846875619 37.0 29.0 38.0 11.0 38.0 42-43 32.476093038087825 37.5 32.5 38.0 11.0 38.0 44-45 32.51743980982659 38.0 32.0 38.0 11.0 38.0 46-47 32.43403118341394 37.5 31.5 38.0 11.0 38.0 48-49 32.107905048582154 37.0 29.0 38.0 11.0 38.0 50-51 31.50096874411144 37.0 28.5 38.0 11.0 38.0 52-53 32.06992593093651 37.0 30.5 38.0 11.0 38.0 54-55 32.20462484719934 37.0 31.5 38.0 11.0 38.0 56-57 32.2703593291749 37.0 31.0 38.0 11.0 38.0 58-59 32.51778527219052 38.0 32.0 38.0 11.0 38.0 60-61 32.4039638786485 37.0 31.0 38.0 11.0 38.0 62-63 32.410508336997324 38.0 31.5 38.0 11.0 38.0 64-65 32.40807318970474 37.5 31.5 38.0 11.0 38.0 66-67 32.30727790152149 37.0 31.0 38.0 11.0 38.0 68-69 31.680623668278827 37.0 27.5 38.0 11.0 38.0 70-71 31.721803748387437 37.0 28.5 38.0 11.0 38.0 72-73 31.939879885393466 37.0 31.0 38.0 11.0 38.0 74-75 32.03724953978615 37.0 30.0 38.0 11.0 38.0 76 30.94935473428388 36.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 54.0 13 622.0 14 2169.0 15 3645.0 16 4923.0 17 5856.0 18 5953.0 19 5435.0 20 4143.0 21 3347.0 22 2532.0 23 2217.0 24 1977.0 25 2068.0 26 2253.0 27 2613.0 28 3110.0 29 3790.0 30 4522.0 31 5606.0 32 7172.0 33 9323.0 34 12741.0 35 18958.0 36 32185.0 37 59752.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.838033715194065 23.35857060719238 9.535727572728284 29.267668104885274 2 19.03956631186313 21.684406843536955 30.48330909459871 28.792717750001206 3 19.648353135010556 21.572795925959927 30.583324072687212 28.195526866342302 4 13.020307389029275 22.663780566171745 32.731471862936 31.584440181862984 5 15.552570674835362 33.33397755219381 33.76737579057733 17.3460759823935 6 26.48083455336996 37.638975459144476 16.282777914679578 19.597412072805987 7 26.14773545428628 28.705345709854026 21.173611144667095 23.973307691192602 8 22.506655843371455 35.99567068191591 17.591236996342303 23.90643647837032 9 23.298202886785248 17.802969899924133 18.865581343655016 40.0332458696356 10-11 22.437102283983126 26.898286167092667 24.594492735416477 26.07011881350773 12-13 22.40195971850789 23.57653459342847 25.822770131686706 28.198735556376935 14-15 24.192870395423448 25.583906690889414 22.226141239225388 27.997081674461754 16-17 25.013166350191092 26.474752013606036 23.010431614701858 25.50165002150101 18-19 21.78607235610316 26.075013589418372 25.34251374041191 26.79640031406656 20-21 23.79365992008465 25.591996869096338 24.942382675666405 25.671960535152603 22-23 24.998429671003997 25.268284669240398 24.060580876775077 25.67270478298053 24-25 21.480806816726783 28.4516685470486 23.730742191180486 26.336782445044125 26-27 22.908130725522785 28.48942831742105 24.636658807158597 23.965782149897567 28-29 21.762954945203624 27.89855422618242 26.165751783056614 24.172739045557336 30-31 22.27416249332628 26.9840579605109 26.038986609073362 24.70279293708946 32-33 20.821958844078097 28.15928955544067 25.67292686344332 25.345824737037915 34-35 21.20844607653653 28.80121762659451 25.78710862002319 24.203227676845767 36-37 23.5298950339255 26.38070016044538 25.167211149987434 24.922193655641685 38-39 23.163662985254216 25.67066378983331 26.979010875106614 24.18666234980586 40-41 21.75414014277604 27.06487733581359 26.194933987220214 24.98604853419015 42-43 19.837124579645163 26.702678674964247 27.027366549418268 26.432830195972322 44-45 19.45698733791884 25.101410199727965 28.766431593112564 26.675170869240638 46-47 20.695778220692155 25.71359545811439 27.697288156066918 25.893338165126533 48-49 20.6070005822142 26.139484994093305 27.81365280223802 25.439861621454472 50-51 22.735519719755995 26.166092891224256 26.06051820982062 25.03786917919913 52-53 18.370305579784908 27.32289685866784 27.162942863563106 27.143854697984143 54-55 18.67013295771109 26.20738310328082 27.312263373690175 27.810220565317923 56-57 19.664874660223497 27.012503775294473 26.389368770764122 26.93325279371791 58-59 19.094010650738884 27.147303004822792 26.617423912938428 27.141262431499896 60-61 18.334364367460562 26.264788895762447 27.009791602227036 28.39105513454995 62-63 19.305909242463045 26.386466100015948 26.17457609919448 28.13304855832653 64-65 20.01338688085676 25.906030862318108 25.447880571624648 28.63270168520049 66-67 18.99525173076226 28.128843621250017 24.329986588857878 28.54591805912985 68-69 19.5456807541226 29.151950292072726 23.81926761978847 27.483101334016208 70-71 19.258486194759104 29.074231102800667 24.315535939043865 27.351746763396363 72-73 19.078405365378714 27.736263417674728 24.33651516139865 28.848816055547903 74-75 18.783901652890563 27.361246348588118 23.792346109147317 30.062505889374 76 18.170660997294164 26.675202937765754 24.70332431387708 30.450811751063007 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1.0 1 0.5 2 0.0 3 0.5 4 1.0 5 0.5 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.0 12 2.0 13 3.0 14 4.0 15 6.0 16 18.0 17 28.0 18 40.0 19 79.0 20 100.0 21 94.0 22 102.0 23 206.0 24 388.0 25 474.0 26 556.0 27 710.0 28 977.0 29 1172.0 30 1341.5 31 1738.5 32 2399.5 33 2833.0 34 3285.5 35 4179.0 36 5249.0 37 5878.0 38 6436.5 39 7789.0 40 9202.5 41 10302.5 42 10783.0 43 11349.5 44 12323.0 45 12964.0 46 13198.0 47 13397.0 48 13225.5 49 12369.0 50 11883.0 51 11345.5 52 10158.5 53 8759.5 54 8010.0 55 7533.0 56 6674.5 57 5623.0 58 4953.0 59 4426.0 60 3579.5 61 2986.0 62 2712.0 63 2462.5 64 2034.0 65 1714.5 66 1458.0 67 1342.0 68 1210.0 69 997.0 70 893.0 71 870.0 72 763.0 73 614.5 74 568.0 75 563.0 76 505.5 77 392.0 78 312.5 79 289.0 80 264.5 81 231.5 82 198.0 83 173.0 84 137.0 85 91.0 86 74.0 87 67.0 88 54.0 89 39.0 90 32.5 91 26.5 92 25.0 93 17.5 94 11.0 95 11.5 96 11.0 97 7.5 98 6.5 99 9.0 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.003865313162840812 7 0.008696954616391826 8 0.003865313162840812 9 0.01256226777923264 10-11 0.002898984872130609 12-13 2.4158207267755075E-4 14-15 4.831641453551015E-4 16-17 9.66328290710203E-4 18-19 0.00314056694480816 20-21 0.0 22-23 0.002898984872130609 24-25 0.003623731090163261 26-27 4.831641453551015E-4 28-29 0.01014644705245713 30-31 2.4158207267755075E-4 32-33 0.0 34-35 0.004348477308195913 36-37 0.021742386540979566 38-39 0.01377017814262039 40-41 7.247462180326522E-4 42-43 4.831641453551015E-4 44-45 0.006039551816938769 46-47 0.00314056694480816 48-49 2.4158207267755075E-4 50-51 0.00314056694480816 52-53 0.016669163014751003 54-55 0.011354357415844885 56-57 0.015219670578685698 58-59 0.016910745087428552 60-61 0.02754035628524078 62-63 0.010629611197812232 64-65 0.024158207267755076 66-67 0.02488295348578773 68-69 0.0 70-71 2.4158207267755075E-4 72-73 0.006039551816938769 74-75 0.01377017814262039 76 0.004348477308195913 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 206969.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.97146230641167 #Duplication Level Percentage of deduplicated Percentage of total 1 76.04970755547656 43.32663047410465 2 8.782599418589477 10.007150634569669 3 5.291518103277585 9.043965724937216 4 3.4532175009653976 7.869394027683652 5 2.136101583372131 6.084841541987583 6 1.322838627323523 4.521843059641648 7 0.7609080499373575 3.034503099995596 8 0.4830889780079794 2.201782840097963 9 0.35412428156769654 1.8157480343207226 >10 1.3619281596574957 11.963597811585007 >50 0.003967741824775738 0.13054275107630525 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0033821490174857105 0.0 6 0.0 0.0 0.0 0.0033821490174857105 0.0 7 0.0 0.0 0.0 0.0033821490174857105 0.0 8 0.0 0.0 0.0 0.0033821490174857105 0.0 9 0.0 0.0 0.0 0.005797969744261218 0.0 10 0.0 0.0 0.0 0.005797969744261218 0.0 11 0.0 0.0 0.0 0.005797969744261218 0.0 12 0.0 0.0 0.0 0.005797969744261218 0.0 13 0.0 0.0 0.0 0.006764298034971421 0.0 14 0.0 0.0 0.0 0.00966328290710203 0.0 15 0.0 0.0 0.0 0.011112775343167335 0.0 16 0.0 0.0 0.0 0.011112775343167335 0.0 17 0.0 0.0 0.0 0.011595939488522436 0.0 18 0.0 0.0 0.0 0.011595939488522436 0.0 19 0.0 0.0 0.0 0.01304543192458774 0.0 20 0.0 0.0 0.0 0.013528596069942842 0.0 21 0.0 0.0 0.0 0.014978088506008146 0.0 22 0.0 0.0 0.0 0.03430465432021221 0.0 23 0.0 0.0 0.0 0.03623731090163261 0.0 24 0.0 0.0 0.0 0.04445110137266934 0.0 25 0.0 0.0 0.0 0.04638375795408974 0.0 26 0.0 0.0 0.0 0.04638375795408974 0.0 27 0.0 0.0 0.0 0.06522715962293871 0.0 28 0.0 0.0 0.0 0.09083485932675908 0.0 29 0.0 0.0 0.0 0.12320685706555087 0.0 30 0.0 0.0 0.0 0.16814112258357533 0.0 31 0.0 0.0 0.0 0.20824374664804873 0.0 32 0.0 0.0 0.0 0.25269484802071807 0.0 33 0.0 0.0 0.0 0.2937638003759017 0.0 34 0.0 0.0 0.0 0.36237310901632613 0.0 35 0.0 0.0 0.0 0.4536911324884403 0.0 36 0.0 0.0 0.0 0.6435746416129952 0.0 37 0.0 0.0 0.0 1.0354207634959824 0.0 38 0.0 0.0 0.0 1.4494924360653045 0.0 39 0.0 0.0 0.0 1.9737255337755897 0.0 40 0.0 0.0 0.0 2.576231223033401 0.0 41 0.0 0.0 0.0 3.313539708845286 0.0 42 0.0 0.0 0.0 4.085152848977383 0.0 43 0.0 0.0 0.0 4.796853635085448 0.0 44 0.0 0.0 0.0 5.601805101247047 0.0 45 0.0 0.0 0.0 6.385497345013022 0.0 46 0.0 0.0 0.0 7.262923432977885 0.0 47 0.0 0.0 0.0 8.079954002773363 0.0 48 0.0 0.0 0.0 8.910996332784137 0.0 49 0.0 0.0 0.0 9.675845174881262 0.0 50 0.0 0.0 0.0 10.42088428701883 0.0 51 0.0 0.0 0.0 11.23066739463398 0.0 52 0.0 0.0 0.0 12.037551517376999 0.0 53 0.0 0.0 0.0 12.83042387990472 0.0 54 0.0 0.0 0.0 13.585609439094744 0.0 55 0.0 0.0 0.0 14.327266402214825 0.0 56 0.0 0.0 0.0 14.95006498557755 0.0 57 0.0 0.0 0.0 15.587841657446285 0.0 58 0.0 0.0 0.0 16.190347346704097 0.0 59 0.0 0.0 0.0 16.790920379380488 0.0 60 0.0 0.0 0.0 17.38617860645797 0.0 61 0.0 0.0 0.0 17.944233194343113 0.0 62 0.0 0.0 0.0 18.49600664833864 0.0 63 0.0 0.0 0.0 19.080635264218312 0.0 64 0.0 0.0 0.0 19.684107281766835 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCGT 80 0.0 56.871464 52 GTGTACA 25 2.384324E-4 56.01006 36 GCCGTAT 50 9.749783E-10 56.01006 54 GTGTCGA 20 0.006939093 52.509422 36 TCCCGGT 20 0.006952373 52.48405 43 CGGTGGT 75 0.0 51.31774 46 GTCGACG 30 5.862977E-4 46.67505 20 ACGCTTC 30 5.8699684E-4 46.663765 15 ACGAATA 45 1.6797676E-6 46.663765 24 GGCTCGT 30 5.876967E-4 46.652493 28 TTACGGA 40 4.576834E-5 43.757854 37 CGACGAC 135 0.0 41.488926 22 GTAGATC 135 0.0 41.468884 38 CGCCGTA 110 0.0 41.371063 53 GACGAAT 60 2.5873123E-7 40.830795 23 CGTATCA 70 1.9121217E-8 40.007183 56 TGGTGCG 35 0.0012522774 40.007183 5 TCGACGA 35 0.0012522774 40.007183 21 CTGTGTA 35 0.0012522774 40.007183 34 AATTGTA 35 0.0012537672 39.997513 23 >>END_MODULE