SRR1779861_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779861_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	206969
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	26375	12.743454333740804	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	3526	1.703636776522088	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	2001	0.9668114548555582	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	700	0.33821490174857105	TruSeq Adapter, Index 2 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	562	0.2715382496895671	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTAACTCGTATGCCGT	428	0.20679425421198344	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT	415	0.20051312032236712	No Hit
CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC	238	0.11499306659451414	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGA	15	0.0022252428	69.976814	41
TCTGTAC	15	0.0022252428	69.976814	3
CTGCCGT	15	0.0022252428	69.976814	44
CGAGAAC	15	0.0022252428	69.976814	28
CGCACGT	30	1.0224903E-7	69.976814	30
AAACGAC	25	2.3846493E-4	56.00851	70
CGGCTTA	25	2.3903532E-4	55.981445	34
TAACTCG	65	3.6379788E-12	53.828312	36
ATCTCGT	3690	0.0	53.66785	37
CTTGAAA	3690	0.0	53.542892	57
ACGTATC	3680	0.0	53.528454	33
CGTATCT	3675	0.0	53.506077	34
GTATCTC	3675	0.0	53.506077	35
GCCGTCT	3830	0.0	53.48058	46
TTGAAAA	3690	0.0	53.43503	58
TATGCCG	3845	0.0	53.41533	43
CTCGTAT	3830	0.0	53.35046	39
CCGTCTT	3845	0.0	53.271946	47
TCTCGTA	3705	0.0	53.2617	38
CTGCTTG	3855	0.0	53.25033	54