SRR1779860_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779860_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	173026
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	16323	9.433842312716008	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	2203	1.2732190537838244	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	1254	0.7247465698796713	No Hit
ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT	455	0.26296625940610086	RNA PCR Primer, Index 47 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	436	0.25198525077156037	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT	293	0.16933871210107151	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAACTCGTATGCCGT	277	0.1600915469351427	No Hit
CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC	192	0.11096598199114584	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATCCG	15	0.00222021	70.011856	63
TCGCAAC	15	0.0022227576	69.99162	19
GTCTACC	15	0.0022227576	69.99162	42
AACTCGT	45	2.6882844E-8	54.437923	37
ATCTCGT	2430	0.0	54.005875	37
GATCTCG	2430	0.0	53.861862	36
CTCGTAT	2550	0.0	53.797478	39
TCTCGTA	2440	0.0	53.784542	38
TCGTATG	2565	0.0	53.755745	40
CGTATGC	2565	0.0	53.61931	41
TATGCCG	2540	0.0	53.458164	43
ATGCCGT	2535	0.0	53.425556	44
AGATCTC	2440	0.0	53.210842	35
TAGATCT	2445	0.0	53.102028	34
CGTCTTC	2525	0.0	53.098095	48
GTATGCC	2570	0.0	52.970314	42
GCCGTCT	2540	0.0	52.92234	46
CCGTCTT	2535	0.0	52.88864	47
TGCCGTC	2550	0.0	52.852085	45
GTCTTCT	2565	0.0	52.81596	49