##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779859_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 127628 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.864669194847526 33.0 23.0 34.0 12.0 34.0 2 28.535783683831134 34.0 23.0 34.0 12.0 34.0 3 28.1722662738584 34.0 23.0 34.0 11.0 34.0 4 28.509269125897138 34.0 23.0 34.0 12.0 34.0 5 28.909533958065627 34.0 23.0 34.0 11.0 34.0 6 31.35579183251324 37.0 27.0 38.0 12.0 38.0 7 31.539121509386653 37.0 27.0 38.0 12.0 38.0 8 30.793211520982858 37.0 26.0 38.0 11.0 38.0 9 31.64765568683988 37.0 27.0 38.0 11.0 38.0 10-11 30.271202244021687 36.5 24.5 38.0 11.0 38.0 12-13 31.006017488325448 37.0 26.0 38.0 11.0 38.0 14-15 29.88998103864356 35.5 23.5 38.0 11.0 38.0 16-17 30.439570470429686 36.5 24.5 38.0 11.0 38.0 18-19 31.134374902059108 37.0 26.0 38.0 11.0 38.0 20-21 30.04993418372144 36.0 23.5 38.0 11.0 38.0 22-23 30.837539568119848 37.0 25.0 38.0 11.0 38.0 24-25 31.11797176168239 37.0 26.0 38.0 11.0 38.0 26-27 30.09796439652741 36.5 23.0 38.0 11.0 38.0 28-29 31.123887391481496 37.0 26.0 38.0 11.0 38.0 30-31 31.50277760366064 37.0 27.0 38.0 11.0 38.0 32-33 31.640980035728838 37.5 27.0 38.0 11.0 38.0 34-35 31.57037640643119 37.0 27.0 38.0 11.0 38.0 36-37 31.12007161437929 37.0 26.0 38.0 11.0 38.0 38-39 31.007231955370294 37.0 25.5 38.0 11.0 38.0 40-41 30.963996928573668 37.0 26.0 38.0 11.0 38.0 42-43 31.324004137023223 37.0 26.5 38.0 11.0 38.0 44-45 31.37430266085812 37.0 27.0 38.0 11.0 38.0 46-47 31.26580765976118 37.0 26.5 38.0 11.0 38.0 48-49 30.978899614504655 37.0 25.5 38.0 11.0 38.0 50-51 30.426105556774374 36.5 24.5 38.0 11.0 38.0 52-53 30.937740934591154 37.0 26.0 38.0 11.0 38.0 54-55 31.0713244742533 37.0 25.5 38.0 11.0 38.0 56-57 31.107715391606856 37.0 25.5 38.0 11.0 38.0 58-59 31.29647882909706 37.0 26.0 38.0 11.0 38.0 60-61 31.214353433415866 37.0 26.0 38.0 11.0 38.0 62-63 31.204003040085247 37.0 26.0 38.0 11.0 38.0 64-65 31.20752499451531 37.0 26.0 38.0 11.0 38.0 66-67 31.136756824521264 37.0 25.0 38.0 11.0 38.0 68-69 30.51949807252327 37.0 24.5 38.0 11.0 38.0 70-71 30.531419437740936 37.0 24.5 38.0 11.0 38.0 72-73 30.757721659823865 37.0 25.0 38.0 11.0 38.0 74-75 30.848849782179457 37.0 25.0 38.0 11.0 38.0 76 29.729761494342934 36.0 23.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 37.0 13 456.0 14 1528.0 15 2875.0 16 3953.0 17 4576.0 18 4698.0 19 4306.0 20 3382.0 21 2570.0 22 2059.0 23 1610.0 24 1522.0 25 1498.0 26 1551.0 27 1786.0 28 2113.0 29 2396.0 30 2852.0 31 3430.0 32 4213.0 33 5347.0 34 7220.0 35 10563.0 36 17766.0 37 33317.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.38834738458646 17.603503933306172 8.904785783683831 36.10336289842354 2 20.082741112773945 21.96948921466461 30.879829503161556 27.06794016939989 3 22.139342464036105 19.527846554047702 30.57322844516877 27.759582536747423 4 14.27273012191682 22.937756605133668 29.973046666875607 32.8164666060739 5 14.917572946375405 29.79753659071677 34.82307957501489 20.461810887892938 6 25.863473954742055 39.563091581520716 16.24616059675296 18.327273866984267 7 24.912041499173306 32.04118573544277 17.3002029510175 25.746569814366428 8 21.992289730610707 35.84413345661407 16.82155114321982 25.342025669555408 9 23.771763489053612 18.896428515459718 17.484446255347823 39.84736174013885 10-11 22.34201762977473 27.214495592556315 22.93281096963761 27.510675808031344 12-13 22.737565424514997 22.740699533017832 24.520873162628888 30.000861879838283 14-15 25.624772284752773 24.793048465639973 21.095148734784704 28.487030514822546 16-17 26.71681259916554 24.889228418640183 20.87872911402323 27.515229868171044 18-19 22.746202697779015 24.91155625727237 23.70331482838192 28.638926216566695 20-21 25.294214435703765 24.11069671232018 22.896621431033942 27.698467420942112 22-23 26.92636181282517 23.830549113019494 21.591550178649786 27.651538895505546 24-25 22.79786250450535 27.493222384153697 21.443514644351463 28.265400466989487 26-27 24.490507494495677 27.484388099696773 22.43373267412068 25.59137173168687 28-29 22.700648422042434 26.522616412325895 24.06135522165847 26.7153799439732 30-31 23.46702917855016 25.784702416397653 24.022549910677906 26.725718494374274 32-33 21.917996051023287 26.862835741373363 23.8666280126618 27.35254019494155 34-35 21.65658496834451 28.50874443678305 23.253463298439165 26.581207296433274 36-37 24.344561950699617 24.870793186814048 23.736829525373125 27.047815337113214 38-39 24.410149118064208 24.135107391648447 25.112249935353443 26.342493554933906 40-41 22.734609447844107 26.09831775408025 24.298541844594013 26.868530953481628 42-43 20.416838063896886 25.585394997159703 25.29117940882647 28.706587530116938 44-45 20.361381115250957 23.730719353713912 27.400163765509728 28.5077357655254 46-47 21.07564289408114 24.910284738219485 26.3273157507091 27.686756616990266 48-49 21.257482684050522 25.492446798508166 25.638966371015766 27.611104146425546 50-51 24.093633692458376 25.560822722820763 23.698726738491676 26.64681684622919 52-53 18.781296283235772 27.168112466793616 25.513866359483117 28.5367248904875 54-55 19.855507974878446 25.299033454918725 25.118810213172754 29.72664835703008 56-57 20.668280947567215 26.10276543558157 24.21029535071428 29.01865826613693 58-59 19.80887002926898 26.13520153280124 24.893914638016764 29.162013799913016 60-61 18.99537223891943 25.251274495589715 25.617655241595777 30.13569802389508 62-63 20.557155451072585 25.519443628171224 24.408659026349298 29.5147418944069 64-65 20.7239897020733 24.841984819570765 23.705607824543392 30.728417653812546 66-67 19.706902294234048 28.230638114457008 22.109676534550655 29.952783056758292 68-69 19.63362271601843 29.348967311248312 21.787147021029867 29.230262951703388 70-71 19.576110164345458 29.314606961665785 22.44187185363656 28.667411020352198 72-73 19.039801911149944 28.42551490955536 22.62115115636717 29.91353202292753 74-75 18.939503759221747 27.389231269516024 21.98801907232045 31.683245898941774 76 18.240156709108717 26.488540646425072 23.294025465230167 31.97727717923604 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 2.0 14 9.5 15 14.0 16 25.0 17 37.0 18 45.0 19 75.0 20 125.5 21 154.0 22 172.5 23 254.0 24 353.5 25 390.0 26 463.0 27 641.0 28 836.0 29 926.0 30 1024.5 31 1270.5 32 1586.5 33 1755.0 34 1997.5 35 2403.0 36 2831.5 37 3097.0 38 3312.5 39 3907.0 40 4403.5 41 4838.0 42 5155.0 43 5379.0 44 5846.5 45 6115.0 46 6140.0 47 6310.5 48 6472.0 49 6307.0 50 6151.0 51 6103.5 52 5830.0 53 5344.0 54 5084.0 55 4897.0 56 4581.5 57 4197.0 58 3941.0 59 3716.0 60 3243.5 61 2801.0 62 2606.0 63 2470.5 64 2185.0 65 1925.5 66 1765.5 67 1715.0 68 1579.0 69 1337.5 70 1189.0 71 1146.0 72 1066.5 73 976.5 74 905.5 75 845.0 76 821.0 77 707.5 78 570.0 79 522.0 80 498.5 81 425.5 82 368.0 83 360.0 84 305.0 85 226.0 86 163.5 87 125.0 88 111.0 89 86.5 90 63.0 91 40.0 92 30.0 93 24.5 94 23.5 95 22.0 96 16.0 97 14.0 98 9.5 99 8.5 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 7.83527125709092E-4 3 0.0 4 0.0 5 0.0 6 0.003134108502836368 7 0.008618798382800013 8 0.004701162754254552 9 0.004701162754254552 10-11 0.002350581377127276 12-13 0.0 14-15 0.001175290688563638 16-17 3.91763562854546E-4 18-19 0.0035258720656909143 20-21 0.0 22-23 0.003134108502836368 24-25 0.001567054251418184 26-27 7.83527125709092E-4 28-29 0.008227034819945465 30-31 0.0 32-33 0.0 34-35 0.003134108502836368 36-37 0.017629360328454573 38-39 0.008618798382800013 40-41 7.83527125709092E-4 42-43 3.91763562854546E-4 44-45 0.005092926317109099 46-47 0.001567054251418184 48-49 0.0 50-51 0.002350581377127276 52-53 0.013319961137054566 54-55 0.006659980568527283 56-57 0.013319961137054566 58-59 0.014495251825618203 60-61 0.022330523082709122 62-63 0.012144670448490926 64-65 0.023114050208418217 66-67 0.019979941705581847 68-69 0.0 70-71 3.91763562854546E-4 72-73 0.006659980568527283 74-75 0.006659980568527283 76 0.002350581377127276 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 127628.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 74.93261666718902 #Duplication Level Percentage of deduplicated Percentage of total 1 82.60678621843466 61.89942645814398 2 8.59727087363413 12.884320055160309 3 4.731531343127516 10.636380731500925 4 2.2899566058451404 6.863697621211647 5 1.0111360903434934 3.7883536528034596 6 0.4297589794531291 1.932177891998621 7 0.18089611543890835 0.9488513492337104 8 0.08156009829037486 0.4889209264424734 9 0.03659748000209128 0.246811044598364 >10 0.03450619543054321 0.31106026890650956 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.004701162754254552 0.0 2 0.0 0.0 0.0 0.004701162754254552 0.0 3 0.0 0.0 0.0 0.004701162754254552 0.0 4 0.0 0.0 0.0 0.02037170526843639 0.0 5 0.0 0.0 0.0 0.02350581377127276 0.0 6 0.0 0.0 0.0 0.02350581377127276 0.0 7 0.0 0.0 0.0 0.02350581377127276 0.0 8 0.0 0.0 0.0 0.02663992227410913 0.0 9 0.0 0.0 0.0 0.02663992227410913 0.0 10 0.0 0.0 0.0 0.027423449399818223 0.0 11 0.0 0.0 0.0 0.027423449399818223 0.0 12 0.0 0.0 0.0 0.027423449399818223 0.0 13 0.0 0.0 0.0 0.028990503651236406 0.0 14 0.0 0.0 0.0 0.028990503651236406 0.0 15 0.0 0.0 0.0 0.031341085028363684 0.0 16 0.0 0.0 0.0 0.031341085028363684 0.0 17 0.0 0.0 0.0 0.03212461215407277 0.0 18 0.0 0.0 0.0 0.033691666405490955 0.0 19 0.0 0.0 0.0 0.036042247782618234 0.0 20 0.0 0.0 0.0 0.04309399191400006 0.0 21 0.0 0.0 0.0 0.04701162754254552 0.0 22 0.0 0.0 0.0 0.0689503870624001 0.0 23 0.0 0.0 0.0 0.06973391418810919 0.0 24 0.0 0.0 0.0 0.07286802269094556 0.0 25 0.0 0.0 0.0 0.08070329394803648 0.0 26 0.0 0.0 0.0 0.08697151095370921 0.0 27 0.0 0.0 0.0 0.14651957250760023 0.0 28 0.0 0.0 0.0 0.17864418466167298 0.0 29 0.0 0.0 0.0 0.20058294418152756 0.0 30 0.0 0.0 0.0 0.22878992070705487 0.0 31 0.0 0.0 0.0 0.26796627699250947 0.0 32 0.0 0.0 0.0 0.3094932146550914 0.0 33 0.0 0.0 0.0 0.3768765474660733 0.0 34 0.0 0.0 0.0 0.4348575547685461 0.0 35 0.0 0.0 0.0 0.5578713135048735 7.83527125709092E-4 36 0.0 0.0 0.0 0.7874447613376375 7.83527125709092E-4 37 0.0 0.0 0.0 1.1196602626382925 7.83527125709092E-4 38 0.0 0.0 0.0 1.4941862287272385 7.83527125709092E-4 39 0.0 0.0 0.0 1.9549001786441846 7.83527125709092E-4 40 0.0 0.0 0.0 2.428150562572476 7.83527125709092E-4 41 0.0 0.0 0.0 3.157614316607641 7.83527125709092E-4 42 0.0 0.0 0.0 3.9513272949509513 7.83527125709092E-4 43 0.0 0.0 0.0 4.866486977779171 7.83527125709092E-4 44 0.0 0.0 0.0 5.616322437082772 7.83527125709092E-4 45 0.0 0.0 0.0 6.294856927946846 7.83527125709092E-4 46 0.0 0.0 0.0 6.862130566960229 7.83527125709092E-4 47 0.0 0.0 0.0 7.501488701538848 7.83527125709092E-4 48 0.0 0.0 0.0 8.158084432883067 7.83527125709092E-4 49 0.0 0.0 0.0 8.602344313160122 7.83527125709092E-4 50 0.0 0.0 0.0 9.155514463910741 7.83527125709092E-4 51 0.0 0.0 0.0 9.818378412260632 7.83527125709092E-4 52 0.0 0.0 0.0 10.672422979283542 7.83527125709092E-4 53 0.0 0.0 0.0 11.454383050741217 7.83527125709092E-4 54 0.0 0.0 0.0 12.064750681668599 7.83527125709092E-4 55 0.0 0.0 0.0 12.721346413012819 7.83527125709092E-4 56 0.0 0.0 0.0 13.296455323283292 7.83527125709092E-4 57 0.0 0.0 0.0 13.895070047325039 7.83527125709092E-4 58 0.0 0.0 0.0 14.451374306578494 7.83527125709092E-4 59 0.0 0.0 0.0 14.923057636255367 7.83527125709092E-4 60 0.0 0.0 0.0 15.350863446892532 7.83527125709092E-4 61 0.0 0.0 0.0 15.805309179803805 7.83527125709092E-4 62 0.0 0.0 0.0 16.251919641457988 7.83527125709092E-4 63 0.0 0.0 0.0 16.729087661014823 7.83527125709092E-4 64 0.0 0.0 0.0 17.257184943742754 7.83527125709092E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCCGA 35 2.958095E-7 59.9906 18 GCAGTGT 25 2.3848085E-4 55.991226 8 GATATCG 20 0.0069314977 52.51235 41 GTCATCG 40 7.439594E-7 52.491768 4 CCGTGCT 20 0.006942255 52.491768 70 CCGTACC 40 7.439594E-7 52.491768 55 GAAGTAT 20 0.006942255 52.491768 6 AACTGGT 20 0.006942255 52.491768 16 CGTAAGG 20 0.006942255 52.491768 1 TGTGTCG 20 0.006942255 52.491768 35 ACGGTGC 20 0.006942255 52.491768 17 GACGCTT 55 2.2628228E-9 50.901115 14 TCCGACG 50 6.1510946E-8 48.99232 20 TATAGAT 30 5.852871E-4 46.67764 39 ATCGGTG 30 5.852871E-4 46.67764 44 TTCCGAC 45 1.6757585E-6 46.65935 19 TCGGTGG 105 0.0 43.326538 45 CGACGAG 50 3.4602617E-6 41.99342 22 ATCGTCA 35 0.0012525435 39.993732 7 AGTCTCT 35 0.0012525435 39.993732 7 >>END_MODULE