SRR1779859_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779859_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	127628
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	20916	16.38825336133137	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	2783	2.1805559908484033	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	1462	1.1455166577866926	No Hit
ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT	498	0.3901965086031278	Illumina PCR Primer Index 9 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	463	0.3627730592033096	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGACCTCGTATGCCGT	380	0.297740307769455	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGAACTCGTATGCCGT	364	0.2852038737581095	No Hit
CTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC	189	0.1480866267590184	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATATCGTATGCCGT	155	0.12144670448490927	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC	135	0.10577616197072744	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGAGCTCGTATGCCGT	133	0.10420910771930925	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTCGTA	55	3.45608E-11	57.269516	38
ATATCGT	25	2.3836212E-4	55.99687	37
ACTCGTA	50	9.713403E-10	55.99687	38
CTCGTAT	2995	0.0	53.636395	39
TATGCCG	3045	0.0	53.56022	43
CGTCTTC	3015	0.0	53.51276	48
TGCCGTC	3050	0.0	53.472412	45
TCGTATG	3035	0.0	53.39075	40
GTATGCC	3055	0.0	53.3849	42
ATGCCGT	3055	0.0	53.3849	44
GCCGTCT	3050	0.0	53.357666	46
CGTATGC	3045	0.0	53.33035	41
CTGCTTG	2990	0.0	53.278767	54
TGCTTGA	2980	0.0	53.222572	55
TCTCGTA	2870	0.0	53.16776	38
ATCTCGT	2865	0.0	53.138386	37
TCTGCTT	2995	0.0	53.072918	53
CCGTCTT	3055	0.0	53.04122	47
GATCTCG	2865	0.0	53.016228	36
GCTTGAA	3005	0.0	52.8963	56