##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779858_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 269755 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.259539211506738 34.0 27.0 34.0 12.0 34.0 2 30.126040295823987 34.0 31.0 34.0 12.0 34.0 3 29.785694426423976 34.0 31.0 34.0 11.0 34.0 4 29.840640581268186 34.0 31.0 34.0 12.0 34.0 5 30.675857722748418 34.0 32.0 34.0 21.0 34.0 6 33.183881670404624 37.0 34.0 38.0 12.0 38.0 7 33.46951863728198 38.0 34.0 38.0 21.0 38.0 8 32.70945116865304 37.0 33.0 38.0 11.0 38.0 9 33.61601082463717 38.0 34.0 38.0 21.0 38.0 10-11 32.13226075512965 37.0 30.0 38.0 11.5 38.0 12-13 33.055704250152914 37.0 34.0 38.0 16.0 38.0 14-15 31.773310967359272 37.0 29.0 38.0 11.0 38.0 16-17 32.43154714463124 37.0 30.5 38.0 16.0 38.0 18-19 33.38262497451391 37.5 34.0 38.0 21.0 38.0 20-21 31.967442679468405 37.0 29.5 38.0 16.0 38.0 22-23 32.938086411743996 37.5 32.5 38.0 16.0 38.0 24-25 33.25645678486033 37.5 34.0 38.0 21.0 38.0 26-27 32.09889529387778 37.0 29.0 38.0 11.0 38.0 28-29 33.41306926655669 37.5 34.0 38.0 21.0 38.0 30-31 33.842468165557634 38.0 35.0 38.0 21.0 38.0 32-33 33.93740987192082 38.0 35.0 38.0 21.0 38.0 34-35 33.87004874793794 38.0 34.5 38.0 21.0 38.0 36-37 33.33192897258624 38.0 34.0 38.0 16.0 38.0 38-39 33.25396748901781 38.0 34.0 38.0 16.0 38.0 40-41 33.23512631832589 38.0 34.0 38.0 16.0 38.0 42-43 33.65251431854831 38.0 34.5 38.0 19.5 38.0 44-45 33.712928397990765 38.0 34.0 38.0 21.0 38.0 46-47 33.61798669162759 38.0 34.0 38.0 21.0 38.0 48-49 33.32406998943486 38.0 34.0 38.0 16.0 38.0 50-51 32.65274601026857 37.5 32.5 38.0 11.0 38.0 52-53 33.22803469815203 37.0 34.0 38.0 21.0 38.0 54-55 33.39646345758188 37.5 34.0 38.0 16.0 38.0 56-57 33.47718670645585 38.0 34.0 38.0 20.0 38.0 58-59 33.7550592204037 38.0 34.0 38.0 21.0 38.0 60-61 33.60820744749866 38.0 34.0 38.0 21.0 38.0 62-63 33.62306722766955 38.0 34.0 38.0 21.0 38.0 64-65 33.646036218049716 38.0 34.5 38.0 21.0 38.0 66-67 33.460979407239904 38.0 34.0 38.0 21.0 38.0 68-69 32.79895831402569 37.0 32.5 38.0 11.0 38.0 70-71 32.81206279772386 37.0 32.5 38.0 15.0 38.0 72-73 33.05038460825564 37.0 33.0 38.0 19.0 38.0 74-75 33.11214991381068 37.5 33.5 38.0 15.5 38.0 76 31.88677132953977 37.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 42.0 13 505.0 14 1923.0 15 3277.0 16 4294.0 17 4879.0 18 5056.0 19 4473.0 20 3903.0 21 3107.0 22 2475.0 23 2337.0 24 2376.0 25 2524.0 26 3025.0 27 3384.0 28 4089.0 29 5013.0 30 6130.0 31 7805.0 32 9926.0 33 13084.0 34 17623.0 35 26235.0 36 45477.0 37 86792.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.3682368685427 18.63742015844124 9.955774356540983 32.038568616475075 2 22.180867824507423 20.450408704194547 31.44334674056088 25.92537673073715 3 18.747011176808588 22.72691887082723 29.952734889066 28.573335063298178 4 15.385813052584755 20.345498693258698 31.813312079479527 32.45537617467702 5 14.773776204333561 33.027376693666476 34.742266130377566 17.456580971622397 6 30.14050046339203 36.8533827618165 16.797775718257647 16.20834105653383 7 28.275005560910504 30.148661674204792 19.558092978423666 22.018239786461034 8 24.464314842000682 35.62806767798093 19.129706244346576 20.777911235671812 9 24.56502637832788 17.705548902787612 19.712377979379305 38.017046739505204 10-11 24.218164967562558 25.69471733086191 24.623169601482857 25.463948100092676 12-13 24.205712972350785 22.683773579310078 25.64442854521426 27.466084903124877 14-15 24.650236882492937 24.61576102671323 22.590211822623576 28.14379026817026 16-17 25.43484063257635 25.853926169769494 23.415408112576642 25.295825085077517 18-19 22.80630213160334 25.814828544949027 25.212418906394813 26.16645041705283 20-21 24.34931697280866 25.262738410780152 25.094066838427466 25.293877777983724 22-23 25.50898980537535 25.16237256719184 24.138276181649676 25.190361445783132 24-25 22.942010583972046 27.530560987590246 23.987988767273098 25.539439661164607 26-27 23.68032296151857 27.47675192351536 24.658623521103525 24.184301593862546 28-29 22.723590723642626 26.77268253259163 26.174142088941366 24.329584654824377 30-31 23.39876961744704 26.175007923900896 25.65230849646066 24.773913962191408 32-33 21.972159922892995 27.316083112453892 25.50295638635058 25.208800578302533 34-35 22.318608479024867 27.70845381615434 25.52141257766508 24.451525127155715 36-37 23.99099772162271 25.835018788733805 25.345232555768337 24.828750933875153 38-39 23.87041283340779 25.49905740295514 26.33024818941659 24.30028157422048 40-41 22.714997210416175 25.889932846098386 26.04507448466841 25.34999545881703 42-43 21.168029330481346 25.635997308654012 27.018185120860338 26.1777882400043 44-45 20.94041016667655 24.09877513494276 28.452162049943652 26.508652648437035 46-47 21.394214283198735 24.386794463773004 28.110235198822615 26.108756054205646 48-49 21.090843711597028 24.978452630076607 28.23270788809825 25.697995770228115 50-51 22.37806437741193 25.20398290287782 26.828988000133457 25.588964719576797 52-53 18.991389457878785 26.29802300469919 27.821968468176216 26.888619069245813 54-55 19.28776782387713 25.44880599532519 27.581202142034932 27.682224038762747 56-57 19.476910699621282 26.302022990125106 26.870009954601827 27.35105635565179 58-59 19.51527420153159 25.87577093980969 27.125402501487656 27.48355235717106 60-61 19.193376147605417 25.291443572668083 27.414977084971003 28.100203194755498 62-63 19.928817706595485 25.41689837986134 26.544322099877654 28.109961813665517 64-65 20.499372447381056 24.71778671368213 25.776561604903254 29.00627923403356 66-67 20.129141816847017 26.46016829592497 24.556967188041686 28.853722699186328 68-69 20.233582757655572 27.09797241565942 23.898025797530718 28.770419029154287 70-71 20.604290197197823 26.910765158690587 24.45316018824524 28.031784455866354 72-73 20.3637179230524 26.464732967057408 24.324354383077164 28.84719472681303 74-75 19.904607958358202 25.92565130186224 23.955525731382238 30.214215008397318 76 19.45222948826312 25.428177410027136 24.407965953408368 30.71162714830138 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 0.5 8 0.0 9 0.5 10 1.5 11 3.5 12 5.0 13 4.0 14 5.5 15 9.0 16 13.0 17 16.0 18 24.0 19 48.5 20 86.0 21 107.0 22 146.0 23 252.5 24 413.0 25 506.0 26 627.5 27 940.0 28 1246.5 29 1362.0 30 1657.0 31 2263.5 32 3273.5 33 3972.0 34 4374.5 35 5386.0 36 6804.0 37 7613.0 38 8218.0 39 9721.5 40 11495.5 41 12930.0 42 13489.0 43 14122.0 44 15296.0 45 16275.5 46 16714.0 47 16840.0 48 16697.0 49 15690.5 50 14953.0 51 14154.0 52 12470.0 53 10726.0 54 9867.0 55 9278.5 56 8123.5 57 6910.0 58 6263.0 59 5809.0 60 4908.0 61 4151.0 62 3841.0 63 3623.0 64 3232.5 65 2847.5 66 2476.0 67 2317.0 68 2169.5 69 1970.5 70 1749.5 71 1580.0 72 1530.0 73 1414.5 74 1267.5 75 1186.0 76 1165.0 77 990.0 78 759.5 79 683.0 80 645.5 81 573.0 82 504.0 83 470.0 84 393.0 85 296.0 86 221.5 87 167.0 88 153.5 89 114.0 90 74.0 91 53.5 92 47.0 93 38.0 94 27.5 95 24.0 96 22.0 97 17.5 98 11.0 99 11.0 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 7.414135048469907E-4 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0018535337621174769 7 0.005560601286352431 8 0.0025949472669644677 9 0.00963837556301088 10-11 0.0018535337621174769 12-13 1.8535337621174768E-4 14-15 3.7070675242349536E-4 16-17 3.7070675242349536E-4 18-19 0.0018535337621174769 20-21 0.0 22-23 0.0018535337621174769 24-25 0.0027803006431762153 26-27 5.560601286352431E-4 28-29 0.005745954662564178 30-31 5.560601286352431E-4 32-33 0.0 34-35 0.0025949472669644677 36-37 0.01686715723526904 38-39 0.007970195177105151 40-41 5.560601286352431E-4 42-43 5.560601286352431E-4 44-45 0.004077774276658449 46-47 0.0016681803859057293 48-49 1.8535337621174768E-4 50-51 7.414135048469907E-4 52-53 0.010194435691646122 54-55 0.0042631276528701965 56-57 0.01130655594891661 58-59 0.013160089711034087 60-61 0.02335452540268021 62-63 0.009267668810587385 64-65 0.02094493151192749 66-67 0.019091397749810012 68-69 1.8535337621174768E-4 70-71 1.8535337621174768E-4 72-73 0.00481918778150544 74-75 0.00963837556301088 76 0.0025949472669644677 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 269755.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.67955061387108 #Duplication Level Percentage of deduplicated Percentage of total 1 77.03985331384452 47.51783531756477 2 10.007829279753375 12.345568251910585 3 5.517604749746968 10.209701442880608 4 3.0189546843073276 7.44831073006868 5 1.6058532290857883 4.9524152760922595 6 0.7917109149906093 2.929942407163048 7 0.45498618138813884 1.9644340242479144 8 0.3140450453099725 1.5496125813785508 9 0.22178122317150462 1.231142956183175 >10 1.021174340954471 9.633196909964694 >50 0.006207037447360914 0.21784010254571698 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001853533762117477 0.0 2 0.0 0.0 0.0 0.001853533762117477 0.0 3 0.0 0.0 0.0 0.001853533762117477 0.0 4 0.0 0.0 0.0 0.0029656540193879633 0.0 5 0.0 0.0 0.0 0.00481918778150544 0.0 6 0.0 0.0 0.0 0.00481918778150544 0.0 7 0.0 0.0 0.0 0.00481918778150544 0.0 8 0.0 0.0 0.0 0.005931308038775927 0.0 9 0.0 0.0 0.0 0.00889696205816389 0.0 10 0.0 0.0 0.0 0.01037978906785787 0.0 11 0.0 0.0 0.0 0.01037978906785787 0.0 12 0.0 0.0 0.0 0.010750495820281366 0.0 13 0.0 0.0 0.0 0.016681803859057293 0.0 14 0.0 0.0 0.0 0.016681803859057293 0.0 15 0.0 0.0 0.0 0.01779392411632778 0.0 16 0.0 0.0 0.0 0.01779392411632778 0.0 17 0.0 0.0 0.0 0.01779392411632778 0.0 18 0.0 0.0 0.0 0.018906044373598264 0.0 19 0.0 0.0 0.0 0.01927675112602176 0.0 20 0.0 0.0 0.0 0.01927675112602176 0.0 21 0.0 0.0 0.0 0.01927675112602176 0.0 22 0.0 0.0 0.0 0.024466645659950697 0.0 23 0.0 0.0 0.0 0.02817371318418565 0.0 24 0.0 0.0 0.0 0.0322514874608441 0.0 25 0.0 0.0 0.0 0.03595855498507905 0.0 26 0.0 0.0 0.0 0.04337269003354896 0.0 27 0.0 0.0 0.0 0.09527163537283832 0.0 28 0.0 0.0 0.0 0.14123927267335173 0.0 29 0.0 0.0 0.0 0.17868065466812477 0.0 30 0.0 0.0 0.0 0.24837352412374192 0.0 31 0.0 0.0 0.0 0.29693610869121984 0.0 32 0.0 0.0 0.0 0.3618097903653315 0.0 33 0.0 0.0 0.0 0.4289077125539842 0.0 34 0.0 0.0 0.0 0.515653092621082 0.0 35 0.0 0.0 0.0 0.6183388630423903 0.0 36 0.0 0.0 0.0 0.8563325980982743 0.0 37 0.0 0.0 0.0 1.2741191080795538 0.0 38 0.0 0.0 0.0 1.824247928676021 0.0 39 0.0 0.0 0.0 2.5575058849696948 0.0 40 0.0 0.0 0.0 3.3971566792089116 0.0 41 0.0 0.0 0.0 4.457748697892532 0.0 42 0.0 0.0 0.0 5.646975959667105 0.0 43 0.0 0.0 0.0 6.811736575781728 0.0 44 0.0 0.0 0.0 7.862690218902337 0.0 45 0.0 0.0 0.0 8.874719653018479 0.0 46 0.0 0.0 0.0 9.91084502604215 0.0 47 0.0 0.0 0.0 10.953272413857018 0.0 48 0.0 0.0 0.0 11.976423050545865 0.0 49 0.0 0.0 0.0 12.853515226779855 0.0 50 0.0 0.0 0.0 13.757668995940762 0.0 51 0.0 0.0 0.0 14.693703545810086 0.0 52 0.0 0.0 0.0 15.836592463531723 0.0 53 0.0 0.0 0.0 17.024336898296603 0.0 54 0.0 0.0 0.0 18.06009156456785 0.0 55 0.0 0.0 0.0 19.04209375173769 0.0 56 0.0 0.0 0.0 19.825397119608535 0.0 57 0.0 0.0 0.0 20.68506607847862 0.0 58 0.0 0.0 0.0 21.456506830271913 0.0 59 0.0 0.0 0.0 22.110804248299385 0.0 60 0.0 0.0 0.0 22.858519767937572 0.0 61 0.0 0.0 0.0 23.611795888862115 0.0 62 0.0 0.0 0.0 24.327259921039463 0.0 63 0.0 0.0 0.0 25.073863320420383 0.0 64 0.0 0.0 0.0 25.856795981538802 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGGTCCG 15 0.0022233808 69.997406 5 GCCGTAT 60 1.8189894E-12 58.331173 54 AATGCGA 25 2.3881841E-4 55.997925 18 TACGAAT 20 0.006947319 52.49805 38 GATCTCG 115 0.0 48.693844 41 TCGGTGG 130 0.0 48.45974 45 CTCGGTG 110 0.0 47.725502 44 ATCTCGG 115 0.0 45.65048 42 CGACGAG 70 3.8198777E-10 44.998333 22 TGGTCGC 110 0.0 44.5438 49 GCGAACT 40 4.5864188E-5 43.74838 28 TAGATCT 195 0.0 43.075325 39 AGATCTC 180 0.0 42.776196 40 CGTATCA 75 7.530616E-10 41.998447 56 ATTAACG 50 3.4718396E-6 41.998444 18 CGGTGGT 110 0.0 41.362103 46 GTAGATC 200 0.0 40.24851 38 ACGTGTA 35 0.0012542898 39.99852 34 CTCGACG 35 0.0012542898 39.99852 44 CGATCTA 35 0.0012542898 39.99852 25 >>END_MODULE