SRR1779858_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779858_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	269755
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	22000	8.1555485533169	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	2771	1.0272284109655057	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	1623	0.601657059183333	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	515	0.19091397749810013	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	508	0.18831903023113566	RNA PCR Primer, Index 42 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT	391	0.14494634019758668	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT	362	0.13419584437730533	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACATCG	15	0.002224736	69.98665	36
ATCTCGT	3160	0.0	54.815495	37
GATCTCG	3165	0.0	54.618336	36
TCTCGTA	3185	0.0	54.495102	38
CTCGTAT	3350	0.0	54.42246	39
GCCGTCT	3405	0.0	54.180096	46
CCGTCTT	3400	0.0	54.156815	47
CGTATGC	3435	0.0	54.094486	41
CTGCTTG	3395	0.0	54.050396	54
TCGTATG	3440	0.0	54.015865	40
TATGCCG	3430	0.0	53.969303	43
CGTCTTC	3415	0.0	53.918938	48
TCGATCT	3150	0.0	53.878613	34
TGCCGTC	3430	0.0	53.877266	45
CGATCTC	3165	0.0	53.844395	35
ATGCCGT	3430	0.0	53.76526	44
CTCGATC	3125	0.0	53.749752	33
CTTGAAA	3290	0.0	53.743046	57
GTCTTCT	3440	0.0	53.638794	49
GTATGCC	3455	0.0	53.578785	42