##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779857_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 130207 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.87599745021389 32.0 21.0 34.0 12.0 34.0 2 27.35703149600252 34.0 21.0 34.0 12.0 34.0 3 27.01227276567312 34.0 21.0 34.0 11.0 34.0 4 27.54555438647692 34.0 23.0 34.0 12.0 34.0 5 27.60216424616188 34.0 23.0 34.0 11.0 34.0 6 29.96000215042202 36.0 23.0 38.0 11.0 38.0 7 30.360548972021473 37.0 24.0 38.0 12.0 38.0 8 29.650779143978433 36.0 21.0 38.0 11.0 38.0 9 30.45208014930073 37.0 25.0 38.0 11.0 38.0 10-11 29.237172348644847 35.0 21.0 38.0 11.0 38.0 12-13 29.780553272865514 36.0 22.0 38.0 11.0 38.0 14-15 28.75369987788675 34.5 21.0 38.0 11.0 38.0 16-17 29.17802422296804 35.0 22.0 38.0 11.0 38.0 18-19 29.719008962651777 36.5 21.5 38.0 11.0 38.0 20-21 28.886976122635495 35.0 22.0 38.0 11.0 38.0 22-23 29.52611994746826 36.5 22.0 38.0 11.0 38.0 24-25 29.794723017963705 36.5 22.0 38.0 11.0 38.0 26-27 28.838902670363346 34.5 21.0 38.0 11.0 38.0 28-29 29.656550723079405 36.5 21.0 38.0 11.0 38.0 30-31 29.924305144884684 37.0 21.5 38.0 11.0 38.0 32-33 30.072960747118053 37.0 22.5 38.0 11.0 38.0 34-35 30.050458116691114 37.0 23.0 38.0 11.0 38.0 36-37 29.652415000729608 36.5 21.5 38.0 11.0 38.0 38-39 29.56199359481441 36.5 21.0 38.0 11.0 38.0 40-41 29.5532651854355 36.5 21.0 38.0 11.0 38.0 42-43 29.909770596050905 37.0 22.5 38.0 11.0 38.0 44-45 29.95675347715561 37.0 22.5 38.0 11.0 38.0 46-47 29.894767562419837 37.0 22.0 38.0 11.0 38.0 48-49 29.589806999623676 36.5 21.5 38.0 11.0 38.0 50-51 29.078966568617663 36.0 21.0 38.0 11.0 38.0 52-53 29.592475826952466 36.5 21.5 38.0 11.0 38.0 54-55 29.665021849823745 36.5 21.0 38.0 11.0 38.0 56-57 29.745374672636647 37.0 22.0 38.0 11.0 38.0 58-59 29.85384810340458 37.0 21.5 38.0 11.0 38.0 60-61 29.876512015483037 37.0 22.5 38.0 11.0 38.0 62-63 29.789454484013916 37.0 21.5 38.0 11.0 38.0 64-65 29.758238804365355 37.0 21.5 38.0 11.0 38.0 66-67 29.813900174337785 37.0 22.5 38.0 11.0 38.0 68-69 29.358636632439115 36.0 21.5 38.0 11.0 38.0 70-71 29.3888615819426 36.0 21.5 38.0 11.0 38.0 72-73 29.52316311719032 36.0 21.5 38.0 11.0 38.0 74-75 29.603519780042546 36.5 22.0 38.0 11.0 38.0 76 28.719999692796854 34.0 21.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 3.0 12 53.0 13 639.0 14 2400.0 15 4302.0 16 5678.0 17 6732.0 18 7000.0 19 6106.0 20 4612.0 21 3259.0 22 2314.0 23 1670.0 24 1391.0 25 1167.0 26 1106.0 27 1260.0 28 1413.0 29 1648.0 30 1921.0 31 2416.0 32 3191.0 33 4312.0 34 5820.0 35 8982.0 36 16355.0 37 34456.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.52743708095571 21.266905773115116 14.313362568832705 31.892294577096468 2 16.303270945494482 28.546084311903353 31.63117190320029 23.519472839401875 3 14.513812621441243 29.25341955501624 31.740997027809563 24.491770795732947 4 11.156082238282119 27.87100539909529 29.077545754068524 31.89536660855407 5 11.262067323569394 35.52113173638898 35.47505126452495 17.741749675516676 6 21.0968941046358 41.76830204909219 19.29741021781205 17.837393628459957 7 21.30414746543779 33.528417818740394 19.43625192012289 25.731182795698928 8 18.57128593482385 40.55345197041497 19.217210313284845 21.658051781476335 9 19.94915553643981 20.371579327347717 19.481417193416334 40.19784794279614 10-11 19.54025636890087 30.54691520164666 24.73675721757563 25.176071211876838 12-13 19.26086923130093 25.138049413625996 26.229004585006948 29.372076770066123 14-15 24.541401542933723 27.7570628194445 21.113001271057897 26.58853436656388 16-17 25.38083736219006 26.624246869395922 21.42097360730839 26.57394216110563 18-19 19.955761387986453 26.76282420527945 25.144581922075528 28.13683248465857 20-21 23.850868232890704 26.212876419854542 23.458032210249833 26.478223137004925 22-23 25.26256772999397 25.897338417643017 22.245774915613513 26.5943189367495 24-25 19.580427636631747 30.539768363491138 22.195938680839298 27.68386531903782 26-27 23.169617142198838 30.140163588187857 22.833224530547984 23.85699473906532 28-29 20.32988344630273 29.758251886556963 25.266230150348505 24.645634516791798 30-31 21.471195865045658 27.87561344628169 25.24518651070987 25.408004177962784 32-33 19.037452047324827 29.960485843640676 24.766428711316255 26.23563339771824 34-35 19.331203342447235 30.82892998678996 24.46199809529661 25.377868575466188 36-37 23.284851231511958 26.427290289625187 24.395958075208068 25.891900403654784 38-39 23.145605714395437 25.359549914552893 26.42447051594693 25.070373855104744 40-41 20.500975377478763 28.641153249466228 25.284549099119857 25.57332227393515 42-43 17.886272522003594 27.825138626484186 26.402393130884903 27.886195720627317 44-45 17.290441007050582 25.968495107602035 28.489577733060933 28.251486152286446 46-47 19.46798665166451 26.479702926572635 26.752353047345117 27.299957374417737 48-49 19.614996179146203 27.41875405605711 26.538613663680383 26.427636101116303 50-51 23.754464114281326 26.42448446680235 23.86160285703314 25.959448561883185 52-53 15.94658740034103 28.857320613853172 26.574957371307434 28.621134614498363 54-55 17.383657073511678 26.586250067205853 26.517892117329893 29.512200741952583 56-57 18.508362616894214 28.314227010004416 24.971868579219233 28.205541793882137 58-59 17.79616102495564 28.46241291640743 25.227550291494804 28.51387576714212 60-61 16.280838413053246 27.047924132606617 25.41549996351052 31.255737490829617 62-63 17.49077320716022 27.12965132132282 25.267394568769852 30.11218090274711 64-65 18.136774788269864 26.55220756275086 24.66516871195099 30.645848937028287 66-67 17.21346105098208 30.999823325626235 21.954863538250002 29.831852085141687 68-69 17.806330713136443 32.73415689692911 20.919462546032648 28.540049843901805 70-71 17.113650676620125 32.172096523969714 22.358800669708 28.355452129702165 72-73 16.83646627368906 30.131525892359978 22.157024634703635 30.874983199247325 74-75 16.52457429894698 28.785609499450832 21.62569030008372 33.06412590151847 76 15.775366158997873 28.365705859311994 22.553243780865266 33.305684200824864 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 0.5 15 3.5 16 10.5 17 14.0 18 11.0 19 12.5 20 18.0 21 19.0 22 32.0 23 84.5 24 152.5 25 181.0 26 216.0 27 295.5 28 413.5 29 487.0 30 645.0 31 927.0 32 1290.5 33 1530.0 34 1777.5 35 2356.5 36 3057.5 37 3427.0 38 3933.0 39 5009.0 40 6240.5 41 7298.5 42 7695.0 43 8004.5 44 8725.0 45 9250.5 46 9365.0 47 9496.0 48 9267.5 49 8684.0 50 8460.0 51 7897.0 52 6749.5 53 5714.0 54 5263.0 55 4776.5 56 3879.0 57 3055.5 58 2643.0 59 2388.0 60 1862.5 61 1403.5 62 1215.0 63 1081.0 64 857.5 65 707.5 66 573.5 67 500.0 68 458.0 69 360.0 70 263.5 71 223.0 72 206.5 73 168.0 74 133.5 75 121.0 76 103.5 77 75.5 78 63.0 79 61.0 80 48.0 81 34.0 82 28.5 83 24.0 84 20.5 85 13.0 86 10.5 87 12.0 88 9.5 89 7.0 90 6.5 91 5.5 92 5.0 93 5.5 94 5.5 95 4.0 96 3.0 97 2.0 98 5.0 99 8.5 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0023040235932015943 7 0.00537605505080372 8 0.0046080471864031886 9 0.0046080471864031886 10-11 0.0030720314576021257 12-13 0.0 14-15 3.840039322002657E-4 16-17 3.840039322002657E-4 18-19 0.0030720314576021257 20-21 0.0 22-23 0.0019200196610013286 24-25 0.0023040235932015943 26-27 0.0015360157288010629 28-29 0.0072960747118050485 30-31 0.0 32-33 3.840039322002657E-4 34-35 0.0023040235932015943 36-37 0.016512169084611426 38-39 0.0072960747118050485 40-41 7.680078644005314E-4 42-43 7.680078644005314E-4 44-45 0.003840039322002657 46-47 0.00268802752540186 48-49 3.840039322002657E-4 50-51 0.0015360157288010629 52-53 0.009984102237206909 54-55 0.007680078644005314 56-57 0.011136114033807706 58-59 0.012288125830408503 60-61 0.024960255593017275 62-63 0.011904121898208237 64-65 0.022656231999815677 66-67 0.018432188745612754 68-69 3.840039322002657E-4 70-71 7.680078644005314E-4 72-73 0.003456035389802392 74-75 0.007680078644005314 76 0.0030720314576021257 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 130207.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 68.16991405991998 #Duplication Level Percentage of deduplicated Percentage of total 1 85.98274036186656 58.61436021104856 2 4.731754579662468 6.451266060964464 3 3.018183456884703 6.172479206187071 4 2.0707059327189565 5.646393819072707 5 1.2741939118091077 4.343084473185006 6 0.7976386291431018 3.2624974079734574 7 0.5171131790631126 2.4676092683189075 8 0.358261418174444 1.953812007034952 9 0.30418422297830155 1.8662591104932915 >10 0.9440976994659878 9.177693979586351 >50 0.0011266082332529687 0.04454445613523082 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0015360157288010629 0.0 2 0.0 0.0 0.0 0.0023040235932015943 0.0 3 0.0 0.0 0.0 0.0023040235932015943 0.0 4 0.0 0.0 0.0 0.006144062915204251 0.0 5 0.0 0.0 0.0 0.011520117966007971 0.0 6 0.0 0.0 0.0 0.011520117966007971 0.0 7 0.0 0.0 0.0 0.011520117966007971 0.0 8 0.0 0.0 0.0 0.011520117966007971 0.0 9 0.0 0.0 0.0 0.011520117966007971 0.0 10 0.0 0.0 0.0 0.013056133694809034 0.0 11 0.0 0.0 0.0 0.015360157288010629 0.0 12 0.0 0.0 0.0 0.015360157288010629 0.0 13 0.0 0.0 0.0 0.01689617301681169 0.0 14 0.0 0.0 0.0 0.019968204474413817 0.0 15 0.0 0.0 0.0 0.023040235932015943 0.0 16 0.0 0.0 0.0 0.023040235932015943 0.0 17 0.0 0.0 0.0 0.023040235932015943 0.0 18 0.0 0.0 0.0 0.023040235932015943 0.0 19 0.0 0.0 0.0 0.02611226738961807 0.0 20 0.0 0.0 0.0 0.03302433816922285 0.0 21 0.0 0.0 0.0 0.034560353898023914 0.0 22 0.0 0.0 0.0 0.0537605505080372 0.0 23 0.0 0.0 0.0 0.0537605505080372 0.0 24 0.0 0.0 0.0 0.07142473138924943 0.0 25 0.0 0.0 0.0 0.07372875498245102 0.0 26 0.0 0.0 0.0 0.07449676284685156 0.0 27 0.0 0.0 0.0 0.08985692013486218 0.0 28 0.0 0.0 0.0 0.10521707742287281 0.0 29 0.0 0.0 0.0 0.14822551782930257 0.0 30 0.0 0.0 0.0 0.1681937223037164 0.0 31 0.0 0.0 0.0 0.1881619267781302 0.0 32 0.0 0.0 0.0 0.22809833572695784 0.0 33 0.0 0.0 0.0 0.27033876826898706 0.0 34 0.0 0.0 0.0 0.31795525586182005 0.0 35 0.0 0.0 0.0 0.4170282703694886 0.0 36 0.0 0.0 0.0 0.6005821499612156 0.0 37 0.0 0.0 0.0 0.9193054136874361 0.0 38 0.0 0.0 0.0 1.3609099357177417 0.0 39 0.0 0.0 0.0 1.8447548902900766 0.0 40 0.0 0.0 0.0 2.401560591980462 0.0 41 0.0 0.0 0.0 3.068191418280123 0.0 42 0.0 0.0 0.0 3.65648544241093 0.0 43 0.0 0.0 0.0 4.326956308032594 0.0 44 0.0 0.0 0.0 4.988979087145853 0.0 45 0.0 0.0 0.0 5.855291958189651 0.0 46 0.0 0.0 0.0 6.786117489843096 0.0 47 0.0 0.0 0.0 7.800655878716198 0.0 48 0.0 0.0 0.0 8.734553441827245 0.0 49 0.0 0.0 0.0 9.592418226362637 0.0 50 0.0 0.0 0.0 10.398058476118795 0.0 51 0.0 0.0 0.0 11.16990637984133 0.0 52 0.0 0.0 0.0 11.93714623637746 0.0 53 0.0 0.0 0.0 12.708994140099994 0.0 54 0.0 0.0 0.0 13.361032816976046 0.0 55 0.0 0.0 0.0 14.006927430936893 0.0 56 0.0 0.0 0.0 14.648213997711336 0.0 57 0.0 0.0 0.0 15.24572411621495 0.0 58 0.0 0.0 0.0 15.91005091892141 0.0 59 0.0 0.0 0.0 16.53290529695024 0.0 60 0.0 0.0 0.0 17.28478499619836 0.0 61 0.0 0.0 0.0 17.910711405684793 0.0 62 0.0 0.0 0.0 18.42374065910435 0.0 63 0.0 0.0 0.0 18.976706321472733 0.0 64 0.0 0.0 0.0 19.45363920526546 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGCGCCG 20 7.9022815E-5 70.00001 51 CGTATCC 15 0.002220464 70.0 56 CGACGTA 15 0.002220464 70.0 22 GTTACGA 15 0.002220464 70.0 54 ACGTGTA 15 0.002220464 70.0 34 GAGCATG 15 0.002220464 70.0 1 CGATAAG 15 0.002220464 70.0 16 ACGGTGC 15 0.002220464 70.0 15 TCGGCGG 40 1.0573785E-8 61.250004 45 TCGCCGT 85 0.0 57.64706 52 GCGCCGT 25 2.3831439E-4 55.999996 52 TGCATTC 25 2.3831439E-4 55.999996 13 TACGCTC 25 2.3831439E-4 55.999996 14 CTCTCGG 50 9.713403E-10 55.999996 42 CTTCCGA 70 0.0 55.0 18 ACAACGG 20 0.0069382684 52.500004 8 TTCAGCA 20 0.0069382684 52.500004 14 GACGTAC 20 0.0069382684 52.500004 23 TTTCCAT 20 0.0069382684 52.500004 62 GCTTGCC 20 0.0069382684 52.500004 11 >>END_MODULE