##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779857_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 130207 Sequences flagged as poor quality 0 Sequence length 76 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.54229035305322 34.0 34.0 34.0 34.0 34.0 2 33.620066509481056 34.0 34.0 34.0 34.0 34.0 3 33.75617286321012 34.0 34.0 34.0 34.0 34.0 4 33.54929458477655 34.0 34.0 34.0 34.0 34.0 5 33.60588908430422 34.0 34.0 34.0 34.0 34.0 6 37.320727764252304 38.0 38.0 38.0 37.0 38.0 7 37.37219965132443 38.0 38.0 38.0 37.0 38.0 8 37.28503843879361 38.0 38.0 38.0 37.0 38.0 9 37.17971384026973 38.0 38.0 38.0 36.0 38.0 10-11 37.1260262505088 38.0 38.0 38.0 35.5 38.0 12-13 37.28586788728717 38.0 38.0 38.0 36.5 38.0 14-15 37.31548227053845 38.0 38.0 38.0 36.5 38.0 16-17 37.18131897670632 38.0 38.0 38.0 36.0 38.0 18-19 37.006190143387066 38.0 38.0 38.0 35.5 38.0 20-21 37.066709163101834 38.0 38.0 38.0 35.5 38.0 22-23 37.10325097729 38.0 38.0 38.0 36.0 38.0 24-25 37.2635687789443 38.0 38.0 38.0 36.0 38.0 26-27 37.12527744284101 38.0 38.0 38.0 36.0 38.0 28-29 36.574316280998715 38.0 37.0 38.0 34.0 38.0 30-31 36.78100639750551 38.0 37.0 38.0 35.0 38.0 32-33 36.77801116683435 38.0 37.0 38.0 34.5 38.0 34-35 36.90867234480481 38.0 37.5 38.0 36.0 38.0 36-37 36.84893285307241 38.0 37.5 38.0 35.0 38.0 38-39 35.645245647315434 38.0 36.5 38.0 32.5 38.0 40-41 36.55124532475213 38.0 37.0 38.0 34.5 38.0 42-43 37.12835331433794 38.0 37.5 38.0 36.0 38.0 44-45 36.930034483553115 38.0 37.5 38.0 35.0 38.0 46-47 37.08457686606711 38.0 38.0 38.0 36.0 38.0 48-49 36.66746795487185 38.0 37.0 38.0 34.0 38.0 50-51 36.793574846206425 38.0 37.0 38.0 34.5 38.0 52-53 36.744733386069875 38.0 37.0 38.0 34.5 38.0 54-55 36.75015936163186 38.0 37.0 38.0 35.0 38.0 56-57 36.605654841905576 38.0 37.0 38.0 34.0 38.0 58-59 36.654611503221794 38.0 37.0 38.0 34.0 38.0 60-61 36.2706382913361 38.0 37.0 38.0 34.0 38.0 62-63 36.17487155068468 38.0 37.0 38.0 34.0 38.0 64-65 36.63081477954334 38.0 37.0 38.0 34.0 38.0 66-67 36.290909858916955 38.0 37.0 38.0 33.0 38.0 68-69 36.25904521262298 38.0 37.0 38.0 34.0 38.0 70-71 34.29322924266745 38.0 34.0 38.0 26.0 38.0 72-73 30.844132803919912 37.0 23.0 38.0 11.0 38.0 74-75 30.30594745290192 37.0 23.0 38.0 11.0 38.0 76 30.21287641985454 37.0 23.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 2.0 22 1.0 23 17.0 24 27.0 25 51.0 26 138.0 27 234.0 28 535.0 29 868.0 30 1437.0 31 2303.0 32 3620.0 33 5820.0 34 10130.0 35 22682.0 36 25721.0 37 56621.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.414427428711935 15.002189932457874 11.981619935300943 46.601762703529246 2 13.609867365041817 14.314130576697107 52.248343023032554 19.82765903522852 3 12.653697573863157 16.840108442710452 50.889737110908015 19.616456872518377 4 8.449622524134647 39.18376124171512 32.716367015598244 19.650249218552 5 7.84596834271583 29.017641140645278 54.018601150475774 9.117789366163109 6 18.081977159446115 55.5039283602264 16.08208468054713 10.33200979978035 7 17.056686660471403 24.719869131459905 18.674879230763324 39.54856497730537 8 14.818711743608254 53.92183215956131 14.29032233290069 16.96913376392974 9 15.678880551736848 15.512222845161935 15.203483683672921 53.6054129194283 10-11 16.093604798513137 33.9586197362661 32.013255815739555 17.934519649481214 12-13 15.933859162717825 17.085102951454225 34.9647100386308 32.016327847197154 14-15 15.292188592011183 16.602794012610687 19.345350096384987 48.75966729899314 16-17 30.56709700707335 31.905350710791282 16.757163593355195 20.770388688780173 18-19 31.51405070387921 21.586397044705738 17.691061156466244 29.208491094948812 20-21 15.815969955532344 18.40722849001974 17.331633475926793 48.44516807852112 22-23 15.416605866044067 33.93212346494428 17.430322486502263 33.22094818250939 24-25 30.54786472153634 33.66178848051734 17.609855190448943 18.18049160749738 26-27 31.13043077561114 35.53610788974479 17.968311995514835 15.365149339129234 28-29 16.050212354174505 35.386346356186685 18.493245370832597 30.07019591880621 30-31 14.99727357208138 35.05264693910466 34.079580974909184 15.870498513904781 32-33 28.102943774144247 37.19730890044314 19.88641163685516 14.81333568855745 34-35 18.048952821276888 19.99969279685424 47.537382782799696 14.413971599069175 36-37 14.861336180082485 46.80470328016159 23.001067530931515 15.33289300882441 38-39 14.737302909981798 22.90045850069505 33.59035996528604 28.77187862403711 40-41 14.49384441696683 17.275952905757755 35.855215157403215 32.37498751987221 42-43 29.618337026185326 17.400052992746136 34.51133391958159 18.470276061486945 44-45 15.385885551468048 32.24404217899191 36.335604076585746 16.034468192954296 46-47 29.349420538066312 17.87538304392237 23.00337155452472 29.7718248634866 48-49 28.52496409563234 16.40234396000215 20.28692773814004 34.78576420622547 50-51 16.351667428400244 16.505678435770495 35.6821612237922 31.460492912037054 52-53 12.68202368468562 16.483250556010095 50.964327006917955 19.870398752386333 54-55 12.262697439956353 17.048899407920267 38.75298249119181 31.935420660931573 56-57 27.21100720032582 16.82778388264314 24.151829282349595 31.809379634681438 58-59 13.942446208986873 17.564239972648313 48.220795734365936 20.27251808399888 60-61 27.57745126284452 31.927782579467973 23.354652837798906 17.1401133198886 62-63 13.07176989382788 50.57618733002474 18.57128589647066 17.78075687967672 64-65 11.74710710157117 52.56337876710487 17.541353181324144 18.14816094999981 66-67 12.118290185894457 52.16146963800714 17.004022142914764 18.71621803318364 68-69 12.641276839239149 52.29019213266102 16.67441137050535 18.394119657594484 70-71 13.136367825980091 49.49113616812093 16.950734300110607 20.421761705788374 72-73 13.718870504370804 43.40961115976095 17.510869398227097 25.36064893764115 74-75 14.541376714748761 40.94274697758729 18.4371015561393 26.078774751524648 76 14.656589397360861 41.494231685023884 18.881822511022015 24.96735640659324 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.0 12 2.0 13 1.0 14 4.0 15 4.5 16 1.0 17 1.0 18 6.5 19 15.0 20 26.0 21 34.0 22 51.5 23 85.5 24 141.0 25 180.0 26 214.0 27 269.0 28 373.0 29 456.0 30 500.5 31 625.5 32 881.5 33 1057.0 34 1320.0 35 2042.5 36 7691.5 37 12881.0 38 15341.5 39 16457.0 40 13021.0 41 9531.0 42 8132.0 43 7583.5 44 7096.0 45 6902.0 46 6647.0 47 6615.5 48 6369.0 49 5765.0 50 5376.0 51 4920.0 52 3905.0 53 3118.5 54 2891.0 55 2507.0 56 1893.5 57 1328.5 58 993.0 59 838.5 60 592.5 61 448.5 62 396.0 63 336.0 64 271.0 65 230.5 66 174.0 67 153.0 68 142.5 69 136.5 70 121.0 71 101.0 72 83.0 73 62.0 74 54.0 75 49.0 76 40.0 77 28.0 78 16.0 79 7.0 80 5.5 81 4.5 82 4.5 83 4.0 84 2.5 85 1.0 86 1.0 87 1.0 88 1.5 89 1.0 90 0.0 91 1.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05068851905043508 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0011520117966007971 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 3.840039322002657E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.016512169084611426 52-53 0.029568302779420463 54-55 0.05568057016903853 56-57 0.056832581965639326 58-59 0.038784397152226834 60-61 0.03417634996582365 62-63 0.03148832244042179 64-65 0.0134401376270093 66-67 0.0403204128810279 68-69 0.00806408257620558 70-71 0.011520117966007973 72-73 0.019200196610013286 74-75 0.009984102237206909 76 0.009984102237206909 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 130207.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.25565445790165 #Duplication Level Percentage of deduplicated Percentage of total 1 35.953888311442874 5.844539848088044 2 10.932627799300764 3.55434039644566 3 11.324766134366438 5.522744552904222 4 10.436549182651422 6.786117489843097 5 8.003401681942739 6.505026611472502 6 6.014362657091562 5.866044068291259 7 3.926107908910517 4.4675017472178915 8 2.6552017386374374 3.452963358344789 9 2.1638476802418976 3.1657284170589906 >10 8.400264575262213 21.57487692673973 >50 0.09449116507606539 0.9500257282634573 >100 0.07086837380704905 2.2402789404563506 >500 0.009449116507606539 1.0775150337539456 >1k 0.009449116507606539 4.799281144638921 >5k 0.0 0.0 >10k+ 0.004724558253803269 24.19301573648114 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT 31501 24.19301573648114 No Hit TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG 3857 2.96220633299285 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 2392 1.8370748116460711 No Hit ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT 723 0.5552696859615842 RNA PCR Primer, Index 15 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 680 0.5222453477923614 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTAACCTCGTATGCCGT 396 0.3041311143026105 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTAAACTCGTATGCCGT 363 0.27878685477739296 No Hit CTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC 299 0.2296343514557589 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATATCGTATGCCGT 244 0.18739391891372967 No Hit CTTTACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC 229 0.1758738009477217 No Hit CTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG 212 0.16281766725291266 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTATCTCGTATGCCGTC 195 0.14976153355810365 No Hit CTTATACACATCTCCGAGCCCACGAGACATCAGTTAATCTCGTATGCCGT 150 0.11520117966007971 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTAAGCTCGTATGCCGT 145 0.11136114033807706 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.680078644005314E-4 0.0 2 0.0 0.0 0.0 0.0023040235932015943 0.0 3 0.0 0.0 0.0 0.0023040235932015943 0.0 4 0.0 0.0 0.0 0.006144062915204251 0.0 5 0.0 0.0 0.0 0.012288125830408503 0.0 6 0.0 0.0 0.0 0.012288125830408503 0.0 7 0.0 0.0 0.0 0.012288125830408503 0.0 8 0.0 0.0 0.0 0.012288125830408503 0.0 9 0.0 0.0 0.0 0.012288125830408503 0.0 10 0.0 0.0 0.0 0.013824141559209566 0.0 11 0.0 0.0 0.0 0.01612816515241116 0.0 12 0.0 0.0 0.0 0.01612816515241116 0.0 13 0.0 0.0 0.0 0.018432188745612754 0.0 14 0.0 0.0 0.0 0.018432188745612754 0.0 15 0.0 0.0 0.0 0.02227222806761541 0.0 16 0.0 0.0 0.0 0.02227222806761541 0.0 17 0.0 0.0 0.0 0.02227222806761541 0.0 18 0.0 0.0 0.0 0.02227222806761541 0.0 19 0.0 0.0 0.0 0.025344259525217537 0.0 20 0.0 0.0 0.0 0.03609636962682498 0.0 21 0.0 0.0 0.0 0.03763238535562604 0.0 22 0.0 0.0 0.0 0.04300844040642976 0.0 23 0.0 0.0 0.0 0.045312463999631354 0.0 24 0.0 0.0 0.0 0.04761648759283295 0.0 25 0.0 0.0 0.0 0.051456526914835606 0.0 26 0.0 0.0 0.0 0.05299254264363667 0.0 27 0.0 0.0 0.0 0.06681668420284624 0.0 28 0.0 0.0 0.0 0.0829448493552574 0.0 29 0.0 0.0 0.0 0.12902532121928928 0.0 30 0.0 0.0 0.0 0.15283356501570577 0.0 31 0.0 0.0 0.0 0.17740981667652278 0.0 32 0.0 0.0 0.0 0.21811423348975092 0.0 33 0.0 0.0 0.0 0.2649627132181834 0.0 34 0.0 0.0 0.0 0.3156512322686184 0.0 35 0.0 0.0 0.0 0.42317233328469284 0.0 36 0.0 0.0 0.0 0.6197823465712289 0.0 37 0.0 0.0 0.0 1.0091623338222984 0.0 38 0.0 0.0 0.0 1.4707350603270177 0.0 39 0.0 0.0 0.0 1.9691721643229627 0.0 40 0.0 0.0 0.0 2.570522322148579 0.0 41 0.0 0.0 0.0 3.2663374472954603 0.0 42 0.0 0.0 0.0 3.8738316680362805 0.0 43 0.0 0.0 0.0 4.571950816776364 0.0 44 0.0 0.0 0.0 5.25931785541484 0.0 45 0.0 0.0 0.0 6.163263111814265 0.0 46 0.0 0.0 0.0 7.153993256890951 0.0 47 0.0 0.0 0.0 8.226132235594093 0.0 48 0.0 0.0 0.0 9.196894176196365 0.0 49 0.0 0.0 0.0 10.110823534832997 0.0 50 0.0 0.0 0.0 10.944112067707573 0.0 51 0.0 0.0 0.0 11.751288333192532 0.0 52 0.0 0.0 0.0 12.525440260508267 0.0 53 0.0 0.0 0.0 13.2934481249088 0.0 54 0.0 0.0 0.0 13.950862856835654 0.0 55 0.0 0.0 0.0 14.603669541576105 0.0 56 0.0 0.0 0.0 15.258780249909758 0.0 57 0.0 0.0 0.0 15.865506462786179 0.0 58 0.0 0.0 0.0 16.52829724976384 0.0 59 0.0 0.0 0.0 17.18263995023309 0.0 60 0.0 0.0 0.0 17.94987980676922 0.0 61 0.0 0.0 0.0 18.577342231984456 0.0 62 0.0 0.0 0.0 19.10265961123442 0.0 63 0.0 0.0 0.0 19.662537344382407 0.0 64 0.0 0.0 0.0 20.161742456242752 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCGGT 15 0.0022205126 69.99962 34 GAATGCA 15 0.0022205126 69.99962 53 TCTTCCG 15 0.0022205126 69.99962 50 CGTGATA 15 0.0022205126 69.99962 24 CCGGATC 15 0.0022205126 69.99962 33 TTCGTGA 15 0.0022205126 69.99962 22 CCGCTTG 15 0.0022205126 69.99962 54 CGGTGGA 15 0.0022205126 69.99962 37 TGCTCGA 15 0.0022205126 69.99962 55 CTCGAAA 15 0.0022205126 69.99962 57 GTCTTCC 15 0.0022205126 69.99962 49 GGTTCAC 15 0.0022205126 69.99962 33 GTGGTTC 15 0.0022205126 69.99962 31 TCGGTGG 15 0.0022205126 69.99962 36 CTGGATA 15 0.0022205126 69.99962 39 CGCTTGA 15 0.0022205126 69.99962 55 TCTGCCG 20 7.902499E-5 69.99961 43 CGTGCGA 20 7.902499E-5 69.99961 10 CCGTGCG 20 7.902499E-5 69.99961 9 AGTCTTC 20 7.902499E-5 69.99961 48 >>END_MODULE