##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779856_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 32234 Sequences flagged as poor quality 0 Sequence length 76 %GC 42 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.48786995098343 34.0 34.0 34.0 34.0 34.0 2 33.59955326673698 34.0 34.0 34.0 34.0 34.0 3 33.74154619346032 34.0 34.0 34.0 34.0 34.0 4 33.542905007135325 34.0 34.0 34.0 34.0 34.0 5 33.598281317863126 34.0 34.0 34.0 34.0 34.0 6 37.38679655022647 38.0 38.0 38.0 37.0 38.0 7 37.38115033815226 38.0 38.0 38.0 37.0 38.0 8 37.32316808339021 38.0 38.0 38.0 37.0 38.0 9 37.223925048085874 38.0 38.0 38.0 36.0 38.0 10-11 37.1651206800273 38.0 38.0 38.0 36.5 38.0 12-13 37.3244555438357 38.0 38.0 38.0 36.5 38.0 14-15 37.34285226779177 38.0 38.0 38.0 37.0 38.0 16-17 37.033753179872186 38.0 38.0 38.0 35.0 38.0 18-19 36.793385865855925 38.0 37.5 38.0 34.0 38.0 20-21 36.98455047465409 38.0 38.0 38.0 35.0 38.0 22-23 37.06030899050692 38.0 38.0 38.0 35.5 38.0 24-25 37.06860768133028 38.0 38.0 38.0 35.5 38.0 26-27 36.93590618601476 38.0 38.0 38.0 35.0 38.0 28-29 36.407613079357205 38.0 37.0 38.0 34.0 38.0 30-31 36.45514053483899 38.0 37.0 38.0 34.0 38.0 32-33 36.41685797605013 38.0 37.0 38.0 34.0 38.0 34-35 36.13128994229696 38.0 37.0 38.0 34.0 38.0 36-37 36.24066203387727 38.0 37.0 38.0 34.0 38.0 38-39 32.3054228454427 36.0 30.5 37.0 17.5 38.0 40-41 35.342340385927905 37.5 35.5 38.0 30.5 38.0 42-43 36.91890550350561 38.0 37.0 38.0 35.0 38.0 44-45 36.71424582738723 38.0 37.0 38.0 35.0 38.0 46-47 36.91198734255755 38.0 37.5 38.0 35.5 38.0 48-49 36.32369547682571 38.0 37.0 38.0 34.0 38.0 50-51 36.32090339393187 38.0 37.0 38.0 33.5 38.0 52-53 36.24163926289012 38.0 37.0 38.0 34.0 38.0 54-55 36.31685487373581 38.0 37.0 38.0 34.0 38.0 56-57 36.132468821741014 38.0 37.0 38.0 33.0 38.0 58-59 36.056694794316556 38.0 37.0 38.0 33.0 38.0 60-61 35.458304895452 38.0 36.5 38.0 29.0 38.0 62-63 35.52351554259478 38.0 36.5 38.0 31.0 38.0 64-65 36.20641248371285 38.0 37.0 38.0 34.0 38.0 66-67 35.58914500217162 38.0 36.5 38.0 31.0 38.0 68-69 35.18280387168828 38.0 36.0 38.0 29.0 38.0 70-71 30.132577402742445 33.5 27.5 37.0 16.5 38.0 72-73 21.303685549419868 22.0 11.0 28.0 10.0 37.0 74-75 20.029844263820813 21.0 11.0 25.0 10.5 35.5 76 20.30936278463734 21.0 11.0 25.0 11.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 23 5.0 24 14.0 25 32.0 26 55.0 27 132.0 28 239.0 29 436.0 30 683.0 31 1054.0 32 1551.0 33 2558.0 34 4688.0 35 10831.0 36 7998.0 37 1958.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 4.308418177303204 3.85212316861187 13.539855972187734 78.2996026818972 2 1.994788111931501 2.47874914686356 80.93007383508098 14.59638890612397 3 2.1902339145002174 5.131227896010423 85.409815722529 7.268722466960352 4 1.5232363343053916 70.99956567599429 21.830985915492956 5.646212074207359 5 1.4953155053670037 17.590122231184463 78.7274306632748 2.1871316001737298 6 3.1426444127318978 78.93838803747596 12.843581311658497 5.075386238133648 7 2.6866042067382265 17.348141713718434 8.78575417261277 71.17949990693056 8 2.2088478004591425 79.18036855494198 4.324626171123659 14.28615747347521 9 2.2026431718061676 14.388533846249302 2.4973630328224856 80.91145994912205 10-11 2.522181547434386 45.541974312837375 38.80529875286964 13.130545386858596 12-13 3.397034187503878 5.747037289818204 46.415275795743625 44.440652726934296 14-15 4.222249798349568 3.3272321151579076 11.118694546131414 81.33182354036111 16-17 42.89104672085376 37.65278898057951 2.480300304026804 16.975863994539928 18-19 45.42563752559409 12.182788360116648 2.6509275919836197 39.74064652230564 20-21 6.739777874294224 3.601786933052057 2.5392442762300673 87.11919091642365 22-23 4.281193770552832 43.30055221195012 2.3360426878451324 50.08221132965191 24-25 43.00428119377055 42.1945771545573 2.4554817894149035 12.345659862257245 26-27 45.59161134206118 46.38425265247875 4.577464788732395 3.4466712167276787 28-29 6.9166097909040145 11.63833219581808 38.26394490289756 43.181113110380345 30-31 37.2308742321772 3.63591239064342 52.19643854315319 6.936774834026184 32-33 12.199851088912329 4.897003164360613 40.990879195880126 41.91226655084693 34-35 3.629707761990445 77.73003660730905 12.40150152013402 6.238754110566483 36-37 41.81454364956257 49.86660048396103 4.4518210585096485 3.867034807966743 38-39 7.079481293044611 12.553514922131912 41.14289259787802 39.22411118694546 40-41 3.2093441707513803 3.8205000930694295 46.63709127008748 46.333064466091706 42-43 42.900353663833215 3.13954209840541 42.562201402246075 11.397902835515294 44-45 6.614134144071477 41.74629273437985 46.7580815288205 4.8814915927281755 46-47 42.88949556369051 5.722218775206303 12.691567909660606 38.69671775144258 48-49 40.5968852764162 2.4430725321089533 4.95749829372712 52.00254389774772 50-51 10.727250162886662 2.430889516304179 44.575098507647915 42.26676181316124 52-53 2.918541505042669 2.4313421256788206 82.30721489526765 12.342901474010862 54-55 2.7887271485769265 2.514044507899066 51.3268568236134 43.37037151991061 56-57 42.526149166640806 2.5590490083491106 13.675160619510226 41.23964120549986 58-59 6.319333467798241 4.738336462228291 77.33542271112283 11.606907358850634 60-61 41.5974926688492 40.36554902173744 14.570759181393617 3.466199128019736 62-63 5.180679896355371 88.41135125909607 2.8052318815844597 3.602736962964112 64-65 1.9267762953769778 92.1827489916227 2.4713000310269932 3.4191746819733164 66-67 2.0729569116665894 92.0184952443017 2.293286164253906 3.6152616797778085 68-69 2.041417823625223 91.6326688900954 2.305126812999302 4.020786473280075 70-71 2.87615767673477 84.78614976497417 3.7619645987496315 8.575727959541428 72-73 5.769827479210624 67.10469157254562 6.995469777832939 20.13001117041082 74-75 7.744097297632714 59.42415686761192 9.40088734448202 23.43085849027334 76 7.207794222594558 62.335163982748455 8.18207204691427 22.274969747742716 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.5 19 4.0 20 4.0 21 1.0 22 5.0 23 11.0 24 9.0 25 5.0 26 11.5 27 14.0 28 20.5 29 31.0 30 43.5 31 51.0 32 44.0 33 42.0 34 47.5 35 57.5 36 91.0 37 120.0 38 233.5 39 3254.5 40 7649.5 41 8234.0 42 7331.0 43 5667.0 44 2962.0 45 1367.0 46 813.0 47 596.5 48 317.0 49 194.0 50 134.0 51 130.5 52 128.0 53 128.0 54 127.0 55 130.5 56 115.5 57 92.5 58 88.0 59 90.5 60 80.5 61 74.5 62 81.0 63 71.0 64 55.0 65 48.0 66 40.5 67 34.0 68 24.0 69 15.0 70 17.0 71 18.0 72 17.5 73 14.5 74 14.0 75 16.0 76 14.0 77 11.0 78 7.0 79 4.0 80 6.0 81 6.5 82 4.0 83 3.0 84 2.5 85 2.5 86 1.5 87 0.0 88 1.0 89 1.0 90 0.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05584165787677608 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.00930694297946268 52-53 0.02792082893838804 54-55 0.046534714897313395 56-57 0.046534714897313395 58-59 0.023267357448656698 60-61 0.02636967177514426 62-63 0.02636967177514426 64-65 0.01240925730595024 66-67 0.029471986101631816 68-69 0.00465347148973134 70-71 0.010858100142706458 72-73 0.01861388595892536 74-75 0.00930694297946268 76 0.015511571632437798 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 32234.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 9.632685983743873 #Duplication Level Percentage of deduplicated Percentage of total 1 73.42995169082126 7.073276664391637 2 10.72463768115942 2.066141341440715 3 5.603864734299517 1.6194080784265061 4 3.2850241545893724 1.2657442452069243 5 1.964573268921095 0.9462058695787057 6 1.2560386473429952 0.725941552398089 7 0.644122383252818 0.43432400570825835 8 0.3864734299516908 0.29782217534280575 9 0.322061191626409 0.27920828938388037 >10 1.7713365539452495 3.9151206800273 >50 0.22544283413848631 1.712477508221133 >100 0.22544283413848631 4.687596947322703 >500 0.06441223832528181 3.3070670720357387 >1k 0.06441223832528181 11.487869950983434 >5k 0.0 0.0 >10k+ 0.032206119162640906 60.181795619532174 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT 19399 60.181795619532174 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 2528 7.842650617360551 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 1175 3.645219333622882 No Hit ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT 548 1.7000682509151828 Illumina PCR Primer Index 9 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 518 1.606998821120556 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT 363 1.126140100514984 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCGT 343 1.064093813985233 No Hit CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 226 0.7011230377861886 No Hit CTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 152 0.47155177762610906 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATATCGTATGCCGT 150 0.465347148973134 No Hit CTTTACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 141 0.4374263200347459 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAGCTCGTATGCCGT 136 0.42191474840230814 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCG 93 0.28851523236334303 No Hit TCTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 88 0.27300366073090526 No Hit TATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCT 87 0.2699013464044177 No Hit CCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 82 0.2543897747719799 No Hit TTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 75 0.232673574486567 No Hit CTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 72 0.2233666315071043 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGATAAGATCTCGTATGCCGT 55 0.17062728795681578 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTACGATCTCGTATGCCGT 50 0.15511571632437798 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTCAGATCTCGTATGCCGT 50 0.15511571632437798 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCG 49 0.15201340199789043 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCTAAGATCTCGTATGCCGT 49 0.15201340199789043 No Hit GCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 47 0.1458087733449153 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCAGT 46 0.14270645901842777 No Hit CTTATACACATCTCCGAGCCCACGAGAATTGCTAAGATCTCGTATGCCGT 45 0.13960414469194019 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATATCGTATGCCG 45 0.13960414469194019 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCC 45 0.13960414469194019 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTCTGCCGT 42 0.1302972017124775 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGCTCTCGTATGCCGT 34 0.10547868710057703 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.012409257305950239 0.0 6 0.0 0.0 0.0 0.01861388595892536 0.0 7 0.0 0.0 0.0 0.01861388595892536 0.0 8 0.0 0.0 0.0 0.01861388595892536 0.0 9 0.0 0.0 0.0 0.021716200285412917 0.0 10 0.0 0.0 0.0 0.021716200285412917 0.0 11 0.0 0.0 0.0 0.046534714897313395 0.0 12 0.0 0.0 0.0 0.046534714897313395 0.0 13 0.0 0.0 0.0 0.046534714897313395 0.0 14 0.0 0.0 0.0 0.046534714897313395 0.0 15 0.0 0.0 0.0 0.06825091518272632 0.0 16 0.0 0.0 0.0 0.06825091518272632 0.0 17 0.0 0.0 0.0 0.06825091518272632 0.0 18 0.0 0.0 0.0 0.07135322950921387 0.0 19 0.0 0.0 0.0 0.07755785816218899 0.0 20 0.0 0.0 0.0 0.08376248681516411 0.0 21 0.0 0.0 0.0 0.08376248681516411 0.0 22 0.0 0.0 0.0 0.08376248681516411 0.0 23 0.0 0.0 0.0 0.08686480114165167 0.0 24 0.0 0.0 0.0 0.08686480114165167 0.0 25 0.0 0.0 0.0 0.08686480114165167 0.0 26 0.0 0.0 0.0 0.08686480114165167 0.0 27 0.0 0.0 0.0 0.08686480114165167 0.0 28 0.0 0.0 0.0 0.10237637277408947 0.0 29 0.0 0.0 0.0 0.11168331575355216 0.0 30 0.0 0.0 0.0 0.12719488738598994 0.0 31 0.0 0.0 0.0 0.1458087733449153 0.0 32 0.0 0.0 0.0 0.15511571632437798 0.0 33 0.0 0.0 0.0 0.17062728795681578 0.0 34 0.0 0.0 0.0 0.18613885958925358 0.0 35 0.0 0.0 0.0 0.22646894583359187 0.0 36 0.0 0.0 0.0 0.3071291183222684 0.0 37 0.0 0.0 0.0 0.4374263200347459 0.0 38 0.0 0.0 0.0 0.49637029223800955 0.0 39 0.0 0.0 0.0 0.6452813799094124 0.0 40 0.0 0.0 0.0 0.7600670099894521 0.0 41 0.0 0.0 0.0 0.8841595830489545 0.0 42 0.0 0.0 0.0 1.0020475274554819 0.0 43 0.0 0.0 0.0 1.1385493578209345 0.0 44 0.0 0.0 0.0 1.2657442452069243 0.0 45 0.0 0.0 0.0 1.408450704225352 0.0 46 0.0 0.0 0.0 1.5449525345908048 0.0 47 0.0 0.0 0.0 1.7466029658124962 0.0 48 0.0 0.0 0.0 1.8520816529130733 0.0 49 0.0 0.0 0.0 1.994788111931501 0.0 50 0.0 0.0 0.0 2.08475522739964 0.0 51 0.0 0.0 0.0 2.1747223428677795 0.0 52 0.0 0.0 0.0 2.246075572376993 0.0 53 0.0 0.0 0.0 2.401191288701371 0.0 54 0.0 0.0 0.0 2.488056089843023 0.0 55 0.0 0.0 0.0 2.587330148290625 0.0 56 0.0 0.0 0.0 2.658683377799839 0.0 57 0.0 0.0 0.0 2.767264379226903 0.0 58 0.0 0.0 0.0 2.87274306632748 0.0 59 0.0 0.0 0.0 2.9471986101631815 0.0 60 0.0 0.0 0.0 3.043370354284296 0.0 61 0.0 0.0 0.0 3.11472358379351 0.0 62 0.0 0.0 0.0 3.2015883849351616 0.0 63 0.0 0.0 0.0 3.226406899547062 0.0 64 0.0 0.0 0.0 3.2946578147297885 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATGCA 15 0.0022052638 70.0 42 CAGTCTT 15 0.0022052638 70.0 47 CTTTACA 15 0.0022052638 70.0 1 AAACAGT 15 0.0022052638 70.0 68 TATGCAG 15 0.0022052638 70.0 43 GAAAACA 15 0.0022052638 70.0 60 TTACACA 15 0.0022052638 70.0 3 GCAGTCT 15 0.0022052638 70.0 46 ATGCAGT 20 7.812356E-5 70.0 44 AGTCTTC 15 0.0022052638 70.0 48 TGCAGTC 15 0.0022052638 70.0 45 TTTACAC 15 0.0022052638 70.0 2 TGAAAAC 15 0.0022052638 70.0 59 ACAACCC 20 7.812356E-5 70.0 70 ACAACAA 15 0.0022052638 70.0 70 GCTTATA 20 7.812356E-5 70.0 1 CAAAAAC 15 0.0022052638 70.0 66 TCTTTAT 50 1.2732926E-11 62.999996 1 TGACAAA 35 2.885463E-7 60.0 59 GCTTGAC 35 2.885463E-7 60.0 56 >>END_MODULE