SRR1779855_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779855_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	86398
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	19472	22.53755873978564	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	2354	2.7246001064839462	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	1301	1.5058218940253247	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	453	0.5243176925391791	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT	428	0.49538183754253573	No Hit
ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT	419	0.48496492974374406	RNA PCR Primer, Index 30 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT	386	0.4467696011481747	No Hit
CTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC	200	0.23148683997314753	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAGCTCGTATGCCGT	181	0.2094955901756985	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATATCGTATGCCGT	180	0.20833815597583277	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCG	120	0.13889210398388852	No Hit
CTTTACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC	119	0.1377346697840228	No Hit
CTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	88	0.10185420958818492	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGAGC	15	0.0022097745	70.06493	54
CCTACCG	15	0.0022097745	70.06493	51
CGTCTTA	15	0.0022097745	70.06493	48
CTTATGC	15	0.0022097745	70.06493	51
CTACCGA	15	0.0022097745	70.06493	52
GCAGTGT	15	0.0022199615	69.983795	24
GACGGCC	15	0.0022199615	69.983795	11
CCTCTCG	15	0.0022199615	69.983795	64
TGCCGGC	15	0.0022199615	69.983795	31
CCGGAAC	80	0.0	61.235817	33
CGGAACT	85	0.0	57.63371	34
CCCAACG	25	2.3677443E-4	56.051945	54
CTTGCAA	45	2.6451744E-8	54.49494	57
CCGTCTT	3060	0.0	52.97592	47
GCCGTCT	3065	0.0	52.889503	46
TCTCGTA	2865	0.0	52.88478	38
CGGATCT	2840	0.0	52.857468	34
TCGTATG	3085	0.0	52.856472	40
CTTGAAA	2910	0.0	52.84966	57
TGCCGTC	3080	0.0	52.828667	45