SRR1779854_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779854_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	186078
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	29202	15.693418888853062	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	3693	1.9846515977170864	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	2068	1.1113619019980867	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	706	0.37941078472468537	Illumina PCR Primer Index 10 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	667	0.35845183202742936	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT	345	0.1854061200141876	No Hit
CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	314	0.1687464396650867	Illumina PCR Primer Index 10 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTAACTCGTATGCCGT	311	0.16713421253452854	No Hit
CTTTACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	212	0.11393071722610947	Illumina PCR Primer Index 10 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCAGT	15	0.002218716	70.025826	67
ATTGTCG	15	0.002218716	70.025826	47
GAGGACC	15	0.0022258272	69.96936	4
CTGACCG	15	0.0022258272	69.96936	36
ATCGTAT	30	8.374331E-6	58.307804	39
CCGACCA	25	2.3909795E-4	55.975494	4
TCGGCGT	20	0.006910698	52.561775	53
CGTATTG	20	0.00691806	52.54763	57
TGCGTAT	20	0.00691806	52.54763	55
CATTGTC	20	0.0069328016	52.519363	46
CTTTGTC	20	0.0069401814	52.505245	45
GTCCACC	20	0.0069475668	52.49113	1
ACGTTTA	20	0.0069549577	52.477024	6
GAACTCG	20	0.0069549577	52.477024	13
GACCGAC	20	0.0069549577	52.477024	38
CTTACGT	20	0.0069549577	52.477024	3
TCTTTAT	145	0.0	50.68109	1
TATGCCG	3950	0.0	50.395653	43
CTGCTTG	3930	0.0	50.377274	54
CGTATGC	3960	0.0	50.35674	41