##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779853_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 181262 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.729270337963833 34.0 23.0 34.0 12.0 34.0 2 29.1541801370392 34.0 27.0 34.0 12.0 34.0 3 28.915382154009112 34.0 23.0 34.0 11.0 34.0 4 29.055510807560328 34.0 24.0 34.0 12.0 34.0 5 29.677284814246782 34.0 31.0 34.0 11.0 34.0 6 31.963621718837924 37.0 28.0 38.0 12.0 38.0 7 32.30129315576348 37.0 31.0 38.0 12.0 38.0 8 31.463621718837924 37.0 27.0 38.0 11.0 38.0 9 32.469706833202764 37.0 31.0 38.0 12.0 38.0 10-11 31.01243503878364 36.5 26.0 38.0 11.0 38.0 12-13 31.840424358111463 37.0 28.0 38.0 11.0 38.0 14-15 30.704469221348106 36.5 25.5 38.0 11.0 38.0 16-17 31.304076419768073 37.0 28.0 38.0 11.0 38.0 18-19 32.1083735145811 37.0 31.0 38.0 11.0 38.0 20-21 30.889251470247487 36.5 25.5 38.0 11.0 38.0 22-23 31.769761450276395 37.0 28.5 38.0 11.0 38.0 24-25 32.07509571780075 37.0 29.5 38.0 11.0 38.0 26-27 30.98579956085666 37.0 25.5 38.0 11.0 38.0 28-29 32.133938718540016 37.0 29.5 38.0 11.0 38.0 30-31 32.55425847668016 38.0 32.0 38.0 11.0 38.0 32-33 32.670479747547745 38.0 33.0 38.0 11.0 38.0 34-35 32.58933753351502 38.0 32.0 38.0 11.0 38.0 36-37 32.127012280566255 37.0 29.0 38.0 11.0 38.0 38-39 32.04190343260032 37.0 29.0 38.0 11.0 38.0 40-41 32.03298816078384 37.0 29.0 38.0 11.0 38.0 42-43 32.40964736127815 37.5 32.5 38.0 11.0 38.0 44-45 32.472925930421155 37.5 31.0 38.0 11.0 38.0 46-47 32.34792179276407 37.5 31.0 38.0 11.0 38.0 48-49 32.06317099005859 37.0 29.0 38.0 11.0 38.0 50-51 31.417679932914787 37.0 28.0 38.0 11.0 38.0 52-53 31.999263497037436 37.0 29.0 38.0 11.0 38.0 54-55 32.13151680992155 37.0 30.0 38.0 11.0 38.0 56-57 32.195360858867275 37.0 31.0 38.0 11.0 38.0 58-59 32.452461078438944 37.5 31.5 38.0 11.0 38.0 60-61 32.3326041862056 37.0 31.0 38.0 11.0 38.0 62-63 32.31737484966513 37.0 31.0 38.0 11.0 38.0 64-65 32.32724454105107 37.5 31.0 38.0 11.0 38.0 66-67 32.2169870132736 37.0 31.0 38.0 11.0 38.0 68-69 31.612789773918415 37.0 27.0 38.0 11.0 38.0 70-71 31.612533239178646 37.0 27.5 38.0 11.0 38.0 72-73 31.844396508920788 37.0 29.0 38.0 11.0 38.0 74-75 31.944872615330297 37.0 29.5 38.0 11.0 38.0 76 30.798380245169977 36.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 5.0 12 32.0 13 422.0 14 1651.0 15 3044.0 16 4302.0 17 5195.0 18 5409.0 19 4843.0 20 3829.0 21 2941.0 22 2293.0 23 1990.0 24 1827.0 25 2056.0 26 2131.0 27 2403.0 28 2827.0 29 3454.0 30 4118.0 31 5084.0 32 6333.0 33 8229.0 34 11082.0 35 16092.0 36 27911.0 37 51758.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.57926967190957 18.652109389223277 9.831679180849715 29.936941758017444 2 20.07811896591674 20.476437422074127 30.509428341296026 28.93601527071311 3 17.9740815729804 20.685089456639876 32.9668268408538 28.374002129525934 4 13.296774834217873 24.37355871611259 30.229722721806006 32.09994372786353 5 13.888183954717482 33.063190299125026 34.88210435722876 18.166521388928732 6 26.326997875920664 37.21718021571819 16.650575156547408 19.805246751813744 7 25.83930571417537 30.96369123480698 18.635483390436466 24.561519660581183 8 22.612643925475982 35.83585737378419 17.0713406930491 24.48015800769074 9 23.31718567235329 17.893557855708327 18.716757520248947 40.07249895168943 10-11 22.710847029356106 26.789310205950667 23.75246197388239 26.747380790810837 12-13 22.662010410373963 22.871928125939593 25.664026834159486 28.802034629526958 14-15 24.688429264202053 24.915452474084045 21.88911998852471 28.506998273189193 16-17 25.489076464746773 26.0948361469712 22.50551693699658 25.910570451285448 18-19 22.31340669162209 25.808453765795985 24.89538306212467 26.982756480457255 20-21 24.291908949476447 25.104820646357208 24.368041839988525 26.23522856417782 22-23 25.632665221205247 25.132270753681237 23.294272772913597 25.94079125219991 24-25 22.06305463834201 28.270038702273865 22.962337694580302 26.704568964803826 26-27 23.397946038690385 28.190798275400734 23.862473415186514 24.548782270722363 28-29 22.257961291461612 27.41349060975879 25.452684660031338 24.87586343874826 30-31 22.81323616221912 26.62017753405311 25.226882782286314 25.339703521441457 32-33 21.496231973607266 27.758438062031754 25.161092782822653 25.584237181538327 34-35 21.48321016465707 28.662026807462393 24.94434651638157 24.910416511498962 36-37 24.00086077988865 25.963549282407534 24.762044021166357 25.27354591653746 38-39 23.713982261824302 25.367522310652564 26.0342901281397 24.88420529938344 40-41 22.087977866231938 26.45818334284997 25.564171100868084 25.88966769005001 42-43 20.492054253408767 26.322061342653253 26.359852256834778 26.826032147103202 44-45 20.058812332935183 24.385049750488953 28.32619328071855 27.22994463585732 46-47 20.773427931456816 25.009103046486224 27.65891712365799 26.558551898398967 48-49 20.84027540245611 25.712780395229007 27.143582218004873 26.30336198431 50-51 22.7653153550779 25.84245487045946 25.72273469567904 25.669495078783598 52-53 18.521696189890285 27.13810026952988 26.885398763528222 27.45480477705161 54-55 18.972570807482544 25.97290460334844 26.788083763451837 28.266440825717176 56-57 19.6840618413357 26.677352431609265 25.990962160253368 27.647623566801666 58-59 19.438252463611384 26.459682847967862 26.099934892241137 28.00212979617961 60-61 18.700286109218126 25.567735046861767 26.526214722623042 29.20576412129707 62-63 19.50674501365555 25.792159783718173 25.905266352175232 28.79582885045105 64-65 20.203672843253027 25.297425257419075 25.118639017337852 29.380262881990042 66-67 19.55359975721124 27.543557131230084 23.830544481383896 29.07229863017478 68-69 19.728127594662958 28.505225875323774 22.95192305039956 28.814723479613708 70-71 19.58667336051329 28.4912363939292 23.798555673862552 28.123534571694957 72-73 19.31162708582179 27.572708940792868 23.765610043392265 29.350053929993074 74-75 19.279873762731313 26.908180042594044 23.220374518610065 30.59157167606458 76 18.343567420844437 26.342155061597623 23.721566615358302 31.592710902199638 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 1.0 11 1.0 12 1.0 13 1.5 14 3.5 15 8.0 16 13.0 17 15.0 18 26.5 19 57.0 20 100.0 21 124.0 22 137.0 23 201.5 24 315.5 25 378.0 26 438.0 27 645.5 28 863.5 29 934.0 30 1139.5 31 1550.0 32 2088.0 33 2421.0 34 2779.5 35 3567.5 36 4377.5 37 4758.0 38 5131.5 39 6246.5 40 7568.5 41 8638.5 42 9128.0 43 9429.0 44 10124.0 45 10586.0 46 10654.0 47 10855.5 48 10785.5 49 10211.0 50 9908.0 51 9518.0 52 8698.0 53 7845.5 54 7423.0 55 6938.0 56 5969.5 57 5083.5 58 4681.0 59 4295.5 60 3633.0 61 3044.5 62 2733.0 63 2562.0 64 2232.5 65 1902.5 66 1653.0 67 1575.0 68 1473.5 69 1266.0 70 1097.0 71 1034.0 72 959.0 73 825.5 74 741.0 75 715.0 76 670.0 77 593.5 78 497.5 79 433.0 80 400.0 81 343.5 82 282.0 83 244.0 84 211.0 85 156.0 86 128.5 87 123.0 88 97.0 89 71.0 90 51.5 91 32.5 92 33.0 93 28.5 94 19.0 95 14.5 96 15.0 97 13.5 98 11.5 99 9.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 5.51687612406351E-4 2 0.0 3 5.51687612406351E-4 4 0.0 5 0.0 6 0.0038618132868444574 7 0.006068563736469862 8 0.002758438062031755 9 0.009930377023314318 10-11 0.002758438062031755 12-13 2.758438062031755E-4 14-15 0.0016550628372190529 16-17 0.001103375224812702 18-19 0.003034281868234931 20-21 0.0 22-23 0.002758438062031755 24-25 0.003585969480641282 26-27 0.0013792190310158775 28-29 0.00551687612406351 30-31 5.51687612406351E-4 32-33 0.0 34-35 0.003585969480641282 36-37 0.01710231598459688 38-39 0.00799947037989209 40-41 2.758438062031755E-4 42-43 8.275314186095264E-4 44-45 0.004137657093047633 46-47 0.002206750449625404 48-49 0.0 50-51 0.0033101256744381058 52-53 0.011309596054330196 54-55 0.007447782767485739 56-57 0.013240502697752423 58-59 0.013240502697752423 60-61 0.020688285465238165 62-63 0.009378689410907968 64-65 0.02206750449625404 66-67 0.01903322262801911 68-69 2.758438062031755E-4 70-71 5.51687612406351E-4 72-73 0.004689344705453984 74-75 0.008827001798501617 76 0.002758438062031755 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 181262.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.9893473277098 #Duplication Level Percentage of deduplicated Percentage of total 1 76.30339326822345 48.82604334123184 2 10.606557117978623 13.574133347470536 3 5.942614990444983 11.407921639753168 4 3.220881601667245 8.244084460420623 5 1.6108403141623195 5.153831017620493 6 0.7954966782549526 3.0541987945737348 7 0.4964923740040207 2.2239156075991735 8 0.2601529032899755 1.3317611589547471 9 0.20057421785919863 1.1551151962418398 >10 0.5629965341152297 5.028995436133836 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 5.51687612406351E-4 0.0 2 0.0 0.0 0.0 5.51687612406351E-4 0.0 3 0.0 0.0 0.0 5.51687612406351E-4 0.0 4 0.0 0.0 0.0 0.004413500899250808 0.0 5 0.0 0.0 0.0 0.006068563736469862 0.0 6 0.0 0.0 0.0 0.006068563736469862 0.0 7 0.0 0.0 0.0 0.008275314186095265 0.0 8 0.0 0.0 0.0 0.008275314186095265 0.0 9 0.0 0.0 0.0 0.009930377023314318 0.0 10 0.0 0.0 0.0 0.012688815085346073 0.0 11 0.0 0.0 0.0 0.013240502697752425 0.0 12 0.0 0.0 0.0 0.013792190310158776 0.0 13 0.0 0.0 0.0 0.013792190310158776 0.0 14 0.0 0.0 0.0 0.018757378821815936 0.0 15 0.0 0.0 0.0 0.019860754046628636 0.0 16 0.0 0.0 0.0 0.02151581688384769 0.0 17 0.0 0.0 0.0 0.02206750449625404 0.0 18 0.0 0.0 0.0 0.023170879721066743 0.0 19 0.0 0.0 0.0 0.024825942558285796 0.0 20 0.0 0.0 0.0 0.02648100539550485 0.0 21 0.0 0.0 0.0 0.02648100539550485 0.0 22 0.0 0.0 0.0 0.03310125674438106 0.0 23 0.0 0.0 0.0 0.034204631969193766 0.0 24 0.0 0.0 0.0 0.04358332138010173 0.0 25 0.0 0.0 0.0 0.046893447054539836 0.0 26 0.0 0.0 0.0 0.05351369840341605 0.0 27 0.0 0.0 0.0 0.0799947037989209 0.0 28 0.0 0.0 0.0 0.11144089770608291 0.0 29 0.0 0.0 0.0 0.14288709161324492 0.0 30 0.0 0.0 0.0 0.1815052244816895 0.0 31 0.0 0.0 0.0 0.22233010779975945 0.0 32 0.0 0.0 0.0 0.25653473976895325 0.0 33 0.0 0.0 0.0 0.3117035010095883 0.0 34 0.0 0.0 0.0 0.36797563747503614 0.0 35 0.0 0.0 0.0 0.49100197504165244 0.0 36 0.0 0.0 0.0 0.6807825137094372 0.0 37 0.0 0.0 0.0 0.9974512032306827 0.0 38 0.0 0.0 0.0 1.4575586719775795 0.0 39 0.0 0.0 0.0 2.0109013472211497 0.0 40 0.0 0.0 0.0 2.629343160728669 0.0 41 0.0 0.0 0.0 3.485562335183326 0.0 42 0.0 0.0 0.0 4.478600037514758 0.0 43 0.0 0.0 0.0 5.4263993556288685 0.0 44 0.0 0.0 0.0 6.298617470843309 0.0 45 0.0 0.0 0.0 7.2629674173296115 0.0 46 0.0 0.0 0.0 8.210766735443721 0.0 47 0.0 0.0 0.0 9.108362480828855 0.0 48 0.0 0.0 0.0 9.817832750383422 0.0 49 0.0 0.0 0.0 10.561507651907185 0.0 50 0.0 0.0 0.0 11.252772230252342 0.0 51 0.0 0.0 0.0 12.021824761946796 0.0 52 0.0 0.0 0.0 12.972934205735344 0.0 53 0.0 0.0 0.0 13.891494080391919 0.0 54 0.0 0.0 0.0 14.83763833566881 0.0 55 0.0 0.0 0.0 15.643102249782084 0.0 56 0.0 0.0 0.0 16.36029614591034 0.0 57 0.0 0.0 0.0 17.065904602178062 0.0 58 0.0 0.0 0.0 17.67993291478633 0.0 59 0.0 0.0 0.0 18.26417009632466 0.0 60 0.0 0.0 0.0 18.81420264589379 0.0 61 0.0 0.0 0.0 19.392371263695644 0.0 62 0.0 0.0 0.0 19.994262448830973 0.0 63 0.0 0.0 0.0 20.66897639880394 0.0 64 0.0 0.0 0.0 21.31169246725734 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCTCTAT 15 0.0022231936 69.98952 1 TCGAACG 15 0.0022231936 69.98952 12 ATCTCGT 25 2.3874146E-4 55.991615 42 GACGTCG 20 0.006946752 52.492138 14 TACCTGG 20 0.006946752 52.492138 45 ACGTCGC 20 0.006946752 52.492138 15 TATCGCA 20 0.006946752 52.492138 46 CGAAGCT 20 0.006946752 52.492138 13 CGTTGTT 30 5.862583E-4 46.672558 55 ACGTGTA 45 1.6764261E-6 46.672554 34 CGGTGGT 90 0.0 46.659683 46 TCTCGTT 30 5.870565E-4 46.659676 43 TCGGTGG 135 0.0 46.659676 45 CTCGGTG 145 0.0 45.8552 44 GACGAAT 40 4.576015E-5 43.755524 23 AGATCTC 155 0.0 42.8968 40 GACGATC 50 3.4616205E-6 42.0053 23 GATCTCG 135 0.0 41.475266 41 TGGACGC 35 0.0012538958 39.99401 49 GGTGGTC 105 0.0 39.99401 47 >>END_MODULE