SRR1779853_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779853_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	181262
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	23531	12.981761207533845	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	2880	1.5888603237302912	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	1681	0.9273868764550761	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	601	0.331564255056217	RNA PCR Primer, Index 24 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	484	0.2670168044046739	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT	354	0.19529741479184826	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT	348	0.19198728911741014	No Hit
CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	195	0.10757908441923844	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACTAG	15	0.002210811	70.08812	1
CGTATGA	15	0.002222951	69.99145	41
GTATGAC	15	0.002222951	69.99145	42
AACTCGT	55	3.6379788E-11	57.26573	37
CGTCTTA	25	2.3838355E-4	56.00861	48
GCTTGAC	25	2.3838355E-4	56.00861	56
ATCTCGT	3365	0.0	53.76758	37
CGTCTTC	3425	0.0	53.657883	48
CTCGTAT	3485	0.0	53.623287	39
TCTCGTA	3380	0.0	53.528965	38
CATCTCG	3375	0.0	53.504574	36
CCGTCTT	3455	0.0	53.495922	47
TATGCCG	3470	0.0	53.451683	43
TCGTATG	3510	0.0	53.440765	40
GTCTTCT	3455	0.0	53.394604	49
TCTTCTG	3450	0.0	53.37052	50
CTGCTTG	3440	0.0	53.32215	54
CGTATGC	3505	0.0	53.31731	41
TGCCGTC	3475	0.0	53.28877	45
GCCGTCT	3470	0.0	53.26467	46