##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779853_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 181262 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.54791406913749 34.0 34.0 34.0 34.0 34.0 2 33.62234224492723 34.0 34.0 34.0 34.0 34.0 3 33.76079376813673 34.0 34.0 34.0 34.0 34.0 4 33.562622060884244 34.0 34.0 34.0 34.0 34.0 5 33.6097251492315 34.0 34.0 34.0 34.0 34.0 6 37.303025454866436 38.0 38.0 38.0 37.0 38.0 7 37.364466904260134 38.0 38.0 38.0 37.0 38.0 8 37.24838079685759 38.0 38.0 38.0 36.0 38.0 9 37.15454425086339 38.0 38.0 38.0 36.0 38.0 10-11 37.10998168397127 38.0 38.0 38.0 35.5 38.0 12-13 37.27744094184109 38.0 38.0 38.0 36.5 38.0 14-15 37.29700102613896 38.0 38.0 38.0 36.5 38.0 16-17 37.212101819465744 38.0 38.0 38.0 36.0 38.0 18-19 37.07757279518046 38.0 38.0 38.0 35.5 38.0 20-21 37.089014796261765 38.0 38.0 38.0 36.0 38.0 22-23 37.08801900012138 38.0 38.0 38.0 36.0 38.0 24-25 37.26167095144045 38.0 38.0 38.0 36.0 38.0 26-27 37.175544239829634 38.0 38.0 38.0 36.0 38.0 28-29 36.659512197813115 38.0 37.0 38.0 34.0 38.0 30-31 36.925108406615834 38.0 37.0 38.0 35.5 38.0 32-33 37.04602729750306 38.0 38.0 38.0 36.0 38.0 34-35 37.1023435689775 38.0 38.0 38.0 36.0 38.0 36-37 37.044101907735765 38.0 38.0 38.0 36.0 38.0 38-39 36.305477706303584 38.0 37.0 38.0 34.0 38.0 40-41 36.77167028941532 38.0 37.0 38.0 35.0 38.0 42-43 37.1594984056228 38.0 38.0 38.0 36.0 38.0 44-45 36.92062042788891 38.0 37.5 38.0 35.5 38.0 46-47 37.069611942933435 38.0 38.0 38.0 36.0 38.0 48-49 36.69849996138187 38.0 37.0 38.0 34.5 38.0 50-51 36.84982511502687 38.0 37.0 38.0 35.0 38.0 52-53 36.78578245854067 38.0 37.0 38.0 35.0 38.0 54-55 36.80379505908574 38.0 37.0 38.0 35.0 38.0 56-57 36.67934812591719 38.0 37.0 38.0 34.5 38.0 58-59 36.75332943474088 38.0 37.0 38.0 34.5 38.0 60-61 36.403840849157575 38.0 37.0 38.0 34.0 38.0 62-63 36.23743531462745 38.0 37.0 38.0 34.0 38.0 64-65 36.644829032008914 38.0 37.0 38.0 34.0 38.0 66-67 36.40744061082853 38.0 37.0 38.0 34.0 38.0 68-69 36.45675320806347 38.0 37.0 38.0 34.0 38.0 70-71 35.47369001776434 38.0 36.5 38.0 28.5 38.0 72-73 33.666317264512145 38.0 34.5 38.0 20.5 38.0 74-75 33.391629243856954 38.0 34.5 38.0 19.0 38.0 76 33.13091547042403 38.0 34.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 22 9.0 23 10.0 24 31.0 25 93.0 26 173.0 27 384.0 28 581.0 29 1063.0 30 1557.0 31 2612.0 32 4159.0 33 6566.0 34 11254.0 35 22637.0 36 30608.0 37 99525.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.26999127813904 16.163595614780792 10.799651125561677 37.766761981518485 2 18.06721761869559 16.817645176595207 42.0523882556741 23.062748949035097 3 16.652690580485704 18.27465216096038 40.33774315631517 24.734914102238747 4 11.990378568039633 27.786849974070684 32.97988546965166 27.24288598823802 5 11.701845946751112 30.794650836910108 44.20176319360925 13.30174002272953 6 25.87083889618342 44.67235272699187 16.81047323763392 12.646335139190784 7 24.464587172159636 26.135648950138474 18.938332358685216 30.461431519016674 8 21.463958248281493 43.64731714314087 16.29850713332083 18.59021747525681 9 21.022056470744005 15.905705553287506 16.9820480850923 46.09018989087619 10-11 21.42561595921925 29.027595414372563 28.786507927750993 20.760280698657194 12-13 21.545332171111433 19.29555008771833 30.03911465171961 29.12000308945063 14-15 19.528362260153813 19.64394081495294 20.705663625028965 40.122033299864285 16-17 27.811400072822767 29.228133861482274 20.44416369674835 22.516302368946608 18-19 28.209442685173947 23.291699308183734 21.60987962176297 26.888978384879348 20-21 19.905716587039755 21.59829418190244 21.227560106365374 37.26842912469243 22-23 19.702695545674217 29.991669517052667 21.047985788527104 29.25764914874601 24-25 27.546018531544725 29.635575710932176 21.315965871945316 21.50243988557778 26-27 27.973872074676436 30.607352892498152 21.505334819211967 19.91344021361344 28-29 27.01090134722115 23.234323796493474 22.15329191998323 27.601482936302148 30-31 28.275093511050304 21.638015689995697 30.058699561960033 20.028191236993965 32-33 20.93902748507685 29.887124714501663 29.628659068089284 19.545188732332207 34-35 26.355220619876203 30.366265405876575 23.964758195319483 19.313755778927742 36-37 20.953095519193212 29.35750460659156 21.61925831117388 28.070141563041346 38-39 18.930332888305326 23.46575674989794 30.04352815261886 27.560382209177874 40-41 19.028257439507453 20.670355617834957 31.38826670785934 28.913120234798246 42-43 26.916711261661362 20.262770259460115 30.844748732490718 21.975769746387805 44-45 18.970606084010992 28.181030773135017 32.2014542485463 20.646908894307686 46-47 26.265295539053966 20.233419028809127 25.59334002714303 27.907945404993878 48-49 25.323013097063917 20.19204245787865 24.066268716002252 30.418675729055177 50-51 18.974036400354237 20.4312644667544 32.10619390899635 28.48850522389501 52-53 16.69311023241825 20.690825508337312 40.11401545775882 22.50204880148562 54-55 16.04823107642291 20.97924871460152 33.675370302396374 29.2971499065792 56-57 24.354735436008966 20.734298930262852 25.535420553525494 29.375545080202688 58-59 16.86737346365478 20.527559011661598 38.924792900387985 23.68027462429564 60-61 24.365490637572226 28.264984575310564 25.206260382002505 22.163264405114706 62-63 16.961770346150132 38.28677069105859 22.439192638273802 22.312266324517473 64-65 16.492211597353652 39.447997307303936 21.160563038332295 22.899228057010117 66-67 16.46647185269194 39.2809543125357 20.492719310590317 23.759854524182046 68-69 16.51507502338015 39.49410599552536 20.319349383564102 23.671469597530397 70-71 17.255953563309717 37.939482222075085 20.340605619192655 24.463958595422543 72-73 18.159746171885775 34.610842874879296 20.715409021934057 26.514001931300868 74-75 19.174223593059857 33.25341889420119 21.00774958548408 26.56460792725487 76 19.39746737661048 33.58015835793307 20.76806356388115 26.2543107015753 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 0.5 14 0.0 15 7.5 16 23.0 17 31.0 18 44.5 19 74.0 20 115.5 21 141.0 22 153.0 23 207.0 24 343.0 25 437.0 26 530.5 27 674.0 28 902.5 29 1081.0 30 1188.0 31 1533.5 32 2122.5 33 2473.0 34 2777.0 35 3338.0 36 3876.5 37 4158.0 38 4658.0 39 5804.5 40 10508.0 41 16365.0 42 18165.0 43 17088.5 44 14651.0 45 11968.0 46 10646.0 47 10011.0 48 8877.5 49 8081.5 50 7784.0 51 7482.0 52 6645.0 53 5847.0 54 5584.0 55 5220.0 56 4321.0 57 3590.5 58 3395.0 59 3119.5 60 2615.5 61 2087.5 62 1788.0 63 1805.5 64 1701.0 65 1468.5 66 1242.0 67 1126.0 68 1122.5 69 1018.5 70 882.0 71 846.0 72 826.0 73 731.0 74 637.5 75 619.0 76 570.5 77 481.0 78 422.0 79 404.0 80 378.0 81 323.0 82 242.0 83 190.0 84 182.5 85 143.5 86 88.0 87 64.0 88 60.5 89 37.5 90 19.0 91 16.5 92 13.0 93 8.0 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05958226213988591 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0019309066434222287 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 5.51687612406351E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.015171409341174653 52-53 0.03227372532577153 54-55 0.051031104147587464 56-57 0.05296201079100969 58-59 0.03806644525603822 60-61 0.03254956913197471 62-63 0.03006697487614613 64-65 0.01710231598459688 66-67 0.035032163387803295 68-69 0.010206220829517495 70-71 0.014343877922565128 72-73 0.02041244165903499 74-75 0.014619721728768303 76 0.014895565534971478 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 181262.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.448113780053184 #Duplication Level Percentage of deduplicated Percentage of total 1 37.33242216549756 10.247045712835565 2 18.449138745402287 10.127881188555792 3 15.128735955620767 12.457657975747813 4 10.867686370671114 11.931899681124559 5 6.877977207404578 9.439375048272666 6 4.104275119088296 6.759276627202612 7 2.2410708901975758 4.30592181483157 8 1.2541957268908408 2.7540245611325043 9 0.7657829678612345 1.8917368229413776 >10 2.9224368379796193 12.528825677748232 >50 0.026129077643559182 0.45514228023523956 >100 0.022109219544550078 1.2716399465966393 >500 0.0020099290495045525 0.331564255056217 >1k 0.004019858099009105 2.5162472001853673 >5k 0.0 0.0 >10k+ 0.0020099290495045525 12.981761207533845 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 23531 12.981761207533845 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 2880 1.5888603237302912 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 1681 0.9273868764550761 No Hit ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT 601 0.331564255056217 RNA PCR Primer, Index 24 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 484 0.2670168044046739 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT 354 0.19529741479184826 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT 348 0.19198728911741014 No Hit CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 195 0.10757908441923844 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 5.51687612406351E-4 0.0 2 0.0 0.0 0.0 5.51687612406351E-4 0.0 3 0.0 0.0 0.0 5.51687612406351E-4 0.0 4 0.0 0.0 0.0 0.004965188511657159 0.0 5 0.0 0.0 0.0 0.007171938961282563 0.0 6 0.0 0.0 0.0 0.007171938961282563 0.0 7 0.0 0.0 0.0 0.009930377023314318 0.0 8 0.0 0.0 0.0 0.009930377023314318 0.0 9 0.0 0.0 0.0 0.012688815085346073 0.0 10 0.0 0.0 0.0 0.01599894075978418 0.0 11 0.0 0.0 0.0 0.01655062837219053 0.0 12 0.0 0.0 0.0 0.017654003597003233 0.0 13 0.0 0.0 0.0 0.017654003597003233 0.0 14 0.0 0.0 0.0 0.019860754046628636 0.0 15 0.0 0.0 0.0 0.02096412927144134 0.0 16 0.0 0.0 0.0 0.023170879721066743 0.0 17 0.0 0.0 0.0 0.024825942558285796 0.0 18 0.0 0.0 0.0 0.027584380620317553 0.0 19 0.0 0.0 0.0 0.029239443457536606 0.0 20 0.0 0.0 0.0 0.03254956913197471 0.0 21 0.0 0.0 0.0 0.03254956913197471 0.0 22 0.0 0.0 0.0 0.035859694806412816 0.0 23 0.0 0.0 0.0 0.04137657093047633 0.0 24 0.0 0.0 0.0 0.047445134666946186 0.0 25 0.0 0.0 0.0 0.04854850989175889 0.0 26 0.0 0.0 0.0 0.05461707362822875 0.0 27 0.0 0.0 0.0 0.08495989231057806 0.0 28 0.0 0.0 0.0 0.11750946144255277 0.0 29 0.0 0.0 0.0 0.14950734296212112 0.0 30 0.0 0.0 0.0 0.1914356015050038 0.0 31 0.0 0.0 0.0 0.23612229810991825 0.0 32 0.0 0.0 0.0 0.2719819929163311 0.0 33 0.0 0.0 0.0 0.33101256744381063 0.0 34 0.0 0.0 0.0 0.394456642870541 0.0 35 0.0 0.0 0.0 0.5301717955225034 0.0 36 0.0 0.0 0.0 0.738709713012104 0.0 37 0.0 0.0 0.0 1.0879279716653243 0.0 38 0.0 0.0 0.0 1.568447882071256 0.0 39 0.0 0.0 0.0 2.151581688384769 0.0 40 0.0 0.0 0.0 2.821330449846079 0.0 41 0.0 0.0 0.0 3.724994758967682 0.0 42 0.0 0.0 0.0 4.794717039423597 0.0 43 0.0 0.0 0.0 5.803753682514813 0.0 44 0.0 0.0 0.0 6.736657435093952 0.0 45 0.0 0.0 0.0 7.7556244552084825 0.0 46 0.0 0.0 0.0 8.792245478920016 0.0 47 0.0 0.0 0.0 9.746113360770597 0.0 48 0.0 0.0 0.0 10.51240745440302 0.0 49 0.0 0.0 0.0 11.32118149419073 0.0 50 0.0 0.0 0.0 12.053822643466363 0.0 51 0.0 0.0 0.0 12.855976431905198 0.0 52 0.0 0.0 0.0 13.840187132438128 0.0 53 0.0 0.0 0.0 14.775297635466893 0.0 54 0.0 0.0 0.0 15.723096953581004 0.0 55 0.0 0.0 0.0 16.53407774381834 0.0 56 0.0 0.0 0.0 17.27168408160563 0.0 57 0.0 0.0 0.0 18.00211848043164 0.0 58 0.0 0.0 0.0 18.622767044388784 0.0 59 0.0 0.0 0.0 19.230726793260583 0.0 60 0.0 0.0 0.0 19.79510322075228 0.0 61 0.0 0.0 0.0 20.393132592600764 0.0 62 0.0 0.0 0.0 21.015987907007535 0.0 63 0.0 0.0 0.0 21.722699738500072 0.0 64 0.0 0.0 0.0 22.399620438922664 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACTAG 15 0.002210811 70.08812 1 CGTATGA 15 0.002222951 69.99145 41 GTATGAC 15 0.002222951 69.99145 42 AACTCGT 55 3.6379788E-11 57.26573 37 CGTCTTA 25 2.3838355E-4 56.00861 48 GCTTGAC 25 2.3838355E-4 56.00861 56 ATCTCGT 3365 0.0 53.76758 37 CGTCTTC 3425 0.0 53.657883 48 CTCGTAT 3485 0.0 53.623287 39 TCTCGTA 3380 0.0 53.528965 38 CATCTCG 3375 0.0 53.504574 36 CCGTCTT 3455 0.0 53.495922 47 TATGCCG 3470 0.0 53.451683 43 TCGTATG 3510 0.0 53.440765 40 GTCTTCT 3455 0.0 53.394604 49 TCTTCTG 3450 0.0 53.37052 50 CTGCTTG 3440 0.0 53.32215 54 CGTATGC 3505 0.0 53.31731 41 TGCCGTC 3475 0.0 53.28877 45 GCCGTCT 3470 0.0 53.26467 46 >>END_MODULE