##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779852_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 286568 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.001922754808632 33.0 23.0 34.0 12.0 34.0 2 29.236411602132826 34.0 27.0 34.0 12.0 34.0 3 28.68957106166774 34.0 23.0 34.0 11.0 34.0 4 28.858668797632674 34.0 24.0 34.0 12.0 34.0 5 29.83429063956897 34.0 31.0 34.0 11.0 34.0 6 32.086649591022024 37.0 31.0 38.0 12.0 38.0 7 32.344462745316996 37.0 31.0 38.0 12.0 38.0 8 31.34102551575891 37.0 27.0 38.0 11.0 38.0 9 32.53486083582256 37.0 31.0 38.0 12.0 38.0 10-11 30.87887866056224 36.5 26.0 38.0 11.0 38.0 12-13 31.868874054325673 37.0 29.5 38.0 11.0 38.0 14-15 30.60835124647553 36.0 25.5 38.0 11.0 38.0 16-17 31.323228692666312 36.5 28.0 38.0 11.0 38.0 18-19 32.388197565673764 37.0 31.0 38.0 11.0 38.0 20-21 30.803294506016023 36.5 26.0 38.0 11.0 38.0 22-23 31.860331579241226 37.0 29.0 38.0 11.0 38.0 24-25 32.159876538901756 37.0 31.0 38.0 11.0 38.0 26-27 30.976899025711177 37.0 26.5 38.0 11.0 38.0 28-29 32.389460791156026 37.0 32.0 38.0 11.0 38.0 30-31 33.02467128220876 37.0 34.0 38.0 11.0 38.0 32-33 33.12165524413054 37.0 34.0 38.0 16.0 38.0 34-35 32.96796746321989 37.0 33.0 38.0 16.0 38.0 36-37 32.33203114095084 37.0 31.5 38.0 11.0 38.0 38-39 32.261768585466626 37.0 31.0 38.0 11.0 38.0 40-41 32.1187623879847 37.0 29.5 38.0 11.0 38.0 42-43 32.65791714357499 37.0 32.5 38.0 16.0 38.0 44-45 32.703635786270624 37.0 32.0 38.0 11.0 38.0 46-47 32.575947070154385 37.0 31.5 38.0 11.0 38.0 48-49 32.17731742553251 37.0 29.5 38.0 11.0 38.0 50-51 31.41763560481282 36.5 28.5 38.0 11.0 38.0 52-53 32.03022842745875 37.0 30.0 38.0 11.0 38.0 54-55 32.28588502554368 37.0 31.5 38.0 11.0 38.0 56-57 32.380846779821894 37.0 31.0 38.0 11.0 38.0 58-59 32.774074565199186 37.0 32.5 38.0 11.0 38.0 60-61 32.51369657463499 37.0 31.5 38.0 11.0 38.0 62-63 32.579974037575724 37.0 32.0 38.0 11.0 38.0 64-65 32.5997529382206 37.0 31.5 38.0 11.0 38.0 66-67 32.37188381117222 37.0 31.0 38.0 11.0 38.0 68-69 31.518923955221798 37.0 27.5 38.0 11.0 38.0 70-71 31.519367131012537 37.0 27.5 38.0 11.0 38.0 72-73 31.83809776388152 37.0 30.5 38.0 11.0 38.0 74-75 31.972495184389047 37.0 29.5 38.0 11.0 38.0 76 30.494179391976772 35.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 30.0 13 440.0 14 1392.0 15 2537.0 16 3423.0 17 4323.0 18 4785.0 19 4888.0 20 4793.0 21 4663.0 22 4608.0 23 4923.0 24 5283.0 25 5806.0 26 6376.0 27 7038.0 28 8070.0 29 9094.0 30 10497.0 31 12128.0 32 14370.0 33 17590.0 34 22212.0 35 29557.0 36 44206.0 37 53533.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.48374894439675 18.82986816300608 11.622802425968189 30.06358046662898 2 20.917897322799476 21.425281259596325 32.91504983110466 24.74177158649954 3 18.437857681248428 21.021537645515203 31.91284442087044 28.62776025236593 4 13.25339884425337 23.609754054884007 31.831188409033807 31.305658691828814 5 13.759735909103599 35.321459479076516 33.75638591887441 17.16241869294548 6 27.611729357942234 38.80577743812007 17.645334533767443 15.937158670170259 7 26.94326374784508 28.776426083739885 21.48670058697488 22.793609581440148 8 23.362855328266438 38.669625845355 18.130901781788488 19.836617044590078 9 23.81763359204869 18.460341169244515 19.784047127142777 37.93797811156402 10-11 23.419754572753142 27.11896050237035 24.551274333781752 24.910010591094757 12-13 23.94549277220899 23.0985718896944 25.76286564247516 27.193069695621453 14-15 25.364574427620767 25.02905079789369 22.154853838718346 27.451520935767203 16-17 25.711613688945345 25.86637679844504 23.002648595267424 25.419360917342193 18-19 22.426425043140828 25.61788656187241 25.79114779898905 26.164540595997714 20-21 24.698500879372435 25.175874487032747 25.04501549370481 25.080609139890008 22-23 25.26652079996371 25.11175553019755 24.224341593297112 25.397382076541636 24-25 22.48290061418202 27.691582914572866 24.113798157453935 25.711718313791177 26-27 24.194167507075136 27.69404711638116 24.268844633192238 23.842940743351466 28-29 22.789724583664867 26.984833256557366 26.12755978056033 24.097882379217445 30-31 23.187113636799836 26.420743527244113 25.525837807280332 24.86630502867572 32-33 22.157781325516677 27.022952707477295 25.574777321224495 25.244488645781537 34-35 22.354870792692502 27.41166617228804 25.718797438537106 24.514665596482352 36-37 24.096560052492705 25.93363023356462 25.424409108042834 24.545400605899843 38-39 23.990374883961167 25.85484850388425 26.18080421020304 23.973972401951546 40-41 22.64582206480205 26.7644338980685 25.605883481932544 24.9838605551969 42-43 21.61433115406828 26.198639398808993 26.631700716592597 25.555328730530125 44-45 21.27170635696139 24.633399871576536 28.07483458499679 26.020059186465282 46-47 21.38973610926933 24.68662539520795 27.737840158013388 26.185798337509336 48-49 21.562147769980495 25.467691674198356 27.68602107011624 25.284139485704916 50-51 23.443042568672233 25.529861931424602 26.392158025966594 24.634937473936567 52-53 19.674379646110353 26.299340383205948 27.45227375841971 26.574006212263985 54-55 20.25818069507771 25.940912985288445 26.772200381442957 27.028705938190882 56-57 20.119186807433906 25.952883692522466 26.774103481371608 27.153826018672017 58-59 19.974836884729548 25.745775755111584 27.47159551949967 26.807791840659196 60-61 19.787469088078687 25.419067048982637 27.55589451290491 27.23756935003377 62-63 19.95777130193519 26.423473572163957 26.44737990123371 27.171375224667145 64-65 20.932468869710906 25.61540676620215 25.754849518756707 27.697274845330238 66-67 20.27087397955444 26.838198082487253 24.945465714076303 27.945462223882007 68-69 20.191195381160675 27.928693440068674 24.346091905689974 27.534019273080673 70-71 20.80197790041753 27.39451401332675 24.912367635435405 26.891140450820316 72-73 20.4574046899074 27.256706037134688 24.577257491236303 27.70863178172161 74-75 20.170168510798685 26.719701821214876 24.64791067200159 28.462218995984845 76 19.39740158222216 25.92973872745229 24.97496152624765 29.697898164077902 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.5 3 1.0 4 1.0 5 1.0 6 2.5 7 4.5 8 5.0 9 2.5 10 1.0 11 1.5 12 1.0 13 1.5 14 5.0 15 13.0 16 23.5 17 29.0 18 51.0 19 88.0 20 128.0 21 153.0 22 215.0 23 346.0 24 488.5 25 562.0 26 775.5 27 1140.5 28 1498.5 29 1705.0 30 2030.5 31 2722.0 32 3689.5 33 4291.0 34 4663.0 35 5705.0 36 7087.0 37 7799.0 38 8860.5 39 10918.0 40 12818.0 41 14338.0 42 14954.0 43 15528.0 44 16760.5 45 17696.0 46 17973.0 47 17964.0 48 17417.0 49 16331.0 50 15783.0 51 15022.5 52 13220.5 53 11342.0 54 10505.0 55 9850.0 56 8515.0 57 7194.0 58 6553.0 59 5939.0 60 4936.5 61 4215.5 62 3883.0 63 3613.5 64 3115.0 65 2676.0 66 2364.0 67 2262.0 68 2110.5 69 1855.5 70 1646.0 71 1540.0 72 1473.5 73 1323.0 74 1164.0 75 1089.0 76 1023.5 77 894.0 78 786.5 79 743.0 80 672.5 81 548.0 82 439.5 83 385.0 84 352.0 85 254.5 86 177.5 87 165.0 88 147.5 89 108.5 90 83.5 91 63.5 92 47.0 93 38.0 94 26.5 95 16.5 96 9.0 97 10.0 98 12.0 99 14.0 100 15.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 6.97914631082326E-4 2 0.0 3 0.0 4 0.0 5 0.0 6 0.001744786577705815 7 0.004885402417576282 8 6.97914631082326E-4 9 0.008374975572987912 10-11 0.0022682225510175596 12-13 1.744786577705815E-4 14-15 3.48957315541163E-4 16-17 3.48957315541163E-4 18-19 0.0022682225510175596 20-21 0.0 22-23 0.001744786577705815 24-25 0.002791658524329304 26-27 3.48957315541163E-4 28-29 0.00697914631082326 30-31 5.234359733117445E-4 32-33 1.744786577705815E-4 34-35 0.004536445102035119 36-37 0.018145780408140477 38-39 0.009072890204070238 40-41 0.001046871946623489 42-43 0.0012213506043940706 44-45 0.005583317048658608 46-47 0.00348957315541163 48-49 3.48957315541163E-4 50-51 0.0026171798665587226 52-53 0.013260377990564193 54-55 0.008549454230758494 56-57 0.01500516456827001 58-59 0.013085899332793612 60-61 0.023903576114569666 62-63 0.011515591412858378 64-65 0.024601490745651995 66-67 0.017796823092599313 68-69 8.723932888529075E-4 70-71 5.234359733117445E-4 72-73 0.005757795706429189 74-75 0.009945283492923146 76 0.0031406158398704673 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 286568.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 70.50154886394564 #Duplication Level Percentage of deduplicated Percentage of total 1 83.47651665277385 58.852237177875075 2 8.164983549639103 11.512879733963873 3 3.7706679220618975 7.975137862708777 4 1.7983814581428146 5.071547129890777 5 0.8830443037011066 3.112799556320621 6 0.49620099087210556 2.0989763042584797 7 0.3155902723506857 1.5574722104982448 8 0.20313028990302157 1.1456800047476254 9 0.1667572366798761 1.058097912318255 >10 0.7237153205625274 7.57878472889831 >50 0.0010120033129663725 0.03638737851998253 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001046871946623489 0.0 2 0.0 0.0 0.0 0.001395829262164652 0.0 3 0.0 0.0 0.0 0.001744786577705815 0.0 4 0.0 0.0 0.0 0.002791658524329304 0.0 5 0.0 0.0 0.0 0.0059322743641997714 0.0 6 0.0 0.0 0.0 0.0059322743641997714 0.0 7 0.0 0.0 0.0 0.0062812316797409345 0.0 8 0.0 0.0 0.0 0.006630188995282097 0.0 9 0.0 0.0 0.0 0.006630188995282097 0.0 10 0.0 0.0 0.0 0.006630188995282097 0.0 11 0.0 0.0 0.0 0.00697914631082326 0.0 12 0.0 0.0 0.0 0.007677060941905586 0.0 13 0.0 0.0 0.0 0.008374975572987912 0.0 14 0.0 0.0 0.0 0.008723932888529075 0.0 15 0.0 0.0 0.0 0.008723932888529075 0.0 16 0.0 0.0 0.0 0.008723932888529075 0.0 17 0.0 0.0 0.0 0.008723932888529075 0.0 18 0.0 0.0 0.0 0.009770804835152564 0.0 19 0.0 0.0 0.0 0.012562463359481869 0.0 20 0.0 0.0 0.0 0.013609335306105357 0.0 21 0.0 0.0 0.0 0.014656207252728846 0.0 22 0.0 0.0 0.0 0.01849473772368164 0.0 23 0.0 0.0 0.0 0.020239524301387455 0.0 24 0.0 0.0 0.0 0.02303118282571676 0.0 25 0.0 0.0 0.0 0.027567627927751876 0.0 26 0.0 0.0 0.0 0.032104073029786996 0.0 27 0.0 0.0 0.0 0.06944250579269144 0.0 28 0.0 0.0 0.0 0.0952653471427375 0.0 29 0.0 0.0 0.0 0.1074788531866782 0.0 30 0.0 0.0 0.0 0.12667150554144216 0.0 31 0.0 0.0 0.0 0.15528600541581752 0.0 32 0.0 0.0 0.0 0.1828536333435694 0.0 33 3.48957315541163E-4 0.0 0.0 0.2153066636888976 0.0 34 3.48957315541163E-4 0.0 0.0 0.24845760866530806 0.0 35 3.48957315541163E-4 0.0 0.0 0.31545741324921134 0.0 36 3.48957315541163E-4 0.0 0.0 0.45399346751905306 0.0 37 3.48957315541163E-4 0.0 0.0 0.6965188018201613 0.0 38 3.48957315541163E-4 0.0 0.0 1.066064598978253 0.0 39 3.48957315541163E-4 0.0 0.0 1.448870774126909 0.0 40 3.48957315541163E-4 0.0 0.0 1.9775411071717708 0.0 41 3.48957315541163E-4 0.0 0.0 2.7204712319589066 0.0 42 3.48957315541163E-4 0.0 0.0 3.657072666871388 0.0 43 3.48957315541163E-4 0.0 0.0 4.623335473604869 0.0 44 3.48957315541163E-4 0.0 0.0 5.317062616900701 0.0 45 3.48957315541163E-4 0.0 0.0 5.950420144607912 0.0 46 3.48957315541163E-4 0.0 0.0 6.58901203204824 0.0 47 3.48957315541163E-4 0.0 0.0 7.160604114904665 0.0 48 3.48957315541163E-4 0.0 0.0 7.697649423522515 0.0 49 3.48957315541163E-4 0.0 0.0 8.186189665280143 0.0 50 3.48957315541163E-4 0.0 0.0 8.741380754306133 0.0 51 3.48957315541163E-4 0.0 0.0 9.40649339772759 0.0 52 3.48957315541163E-4 0.0 0.0 10.308897015717038 0.0 53 3.48957315541163E-4 0.0 0.0 11.404622986516289 0.0 54 3.48957315541163E-4 0.0 0.0 12.257823623014433 0.0 55 3.48957315541163E-4 0.0 0.0 12.924332095698054 0.0 56 3.48957315541163E-4 0.0 0.0 13.536054269841713 0.0 57 3.48957315541163E-4 0.0 0.0 14.109391139275845 0.0 58 3.48957315541163E-4 0.0 0.0 14.63910834426733 0.0 59 3.48957315541163E-4 0.0 0.0 15.086122665475559 0.0 60 3.48957315541163E-4 0.0 0.0 15.553376510985176 0.0 61 3.48957315541163E-4 0.0 0.0 15.99550542977583 0.0 62 3.48957315541163E-4 0.0 0.0 16.576170402836325 0.0 63 3.48957315541163E-4 0.0 0.0 17.178470729460372 0.0 64 3.48957315541163E-4 0.0 0.0 17.742036794059352 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTGTCGC 25 2.8323993E-6 70.01309 36 CGGTGGT 85 0.0 53.53008 46 AAGTCGA 20 0.0069463956 52.500652 31 GTCATCG 20 0.006951192 52.491493 4 AACGCGA 20 0.006951192 52.491493 9 CCGTACC 30 5.866564E-4 46.675392 55 GACGAAT 60 4.9258233E-9 46.659107 23 GTAGATC 130 0.0 45.769802 38 CGACGAG 55 1.3096724E-7 44.538235 22 CTCGGTG 90 1.8189894E-12 42.778313 44 CGACGAA 270 0.0 42.770847 22 TCGGTGG 90 1.8189894E-12 42.770844 45 TGGTCGC 80 1.4169927E-9 39.37549 49 ACGAAGG 45 9.1933856E-5 38.882587 24 CTTCCGA 55 6.6890625E-6 38.17563 18 TCGCCGT 90 4.476533E-9 35.006546 52 CGTATCA 80 6.21294E-8 35.006546 56 ACTCGGT 40 0.0024162654 35.000435 43 TAGATCT 170 0.0 35.000435 39 CTCTCGG 50 1.7071608E-4 35.000435 42 >>END_MODULE