##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779850_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 90503 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.5641138967769 34.0 34.0 34.0 34.0 34.0 2 33.64635426449952 34.0 34.0 34.0 34.0 34.0 3 33.79025004695977 34.0 34.0 34.0 34.0 34.0 4 33.6009856026872 34.0 34.0 34.0 34.0 34.0 5 33.64458636730274 34.0 34.0 34.0 34.0 34.0 6 37.37724716307747 38.0 38.0 38.0 37.0 38.0 7 37.40763289614709 38.0 38.0 38.0 37.0 38.0 8 37.324596974685925 38.0 38.0 38.0 37.0 38.0 9 37.259350518767334 38.0 38.0 38.0 37.0 38.0 10-11 37.184165165795605 38.0 38.0 38.0 36.5 38.0 12-13 37.34009369855143 38.0 38.0 38.0 36.5 38.0 14-15 37.35224246710054 38.0 38.0 38.0 37.0 38.0 16-17 37.16006651713203 38.0 38.0 38.0 36.0 38.0 18-19 36.99795034418749 38.0 38.0 38.0 35.5 38.0 20-21 37.104543495795724 38.0 38.0 38.0 35.5 38.0 22-23 37.13357015789532 38.0 38.0 38.0 36.0 38.0 24-25 37.256483210501315 38.0 38.0 38.0 36.0 38.0 26-27 37.10662629968067 38.0 38.0 38.0 36.0 38.0 28-29 36.63063102880568 38.0 37.0 38.0 34.0 38.0 30-31 36.94964807796427 38.0 37.0 38.0 35.5 38.0 32-33 36.80437665049777 38.0 37.0 38.0 34.5 38.0 34-35 36.69271736848502 38.0 37.0 38.0 34.5 38.0 36-37 36.531534866247526 38.0 37.0 38.0 34.0 38.0 38-39 35.26143884733103 38.0 36.0 38.0 29.0 38.0 40-41 36.363678552092196 38.0 37.0 38.0 34.0 38.0 42-43 37.08883683413809 38.0 37.5 38.0 36.0 38.0 44-45 36.86415367446383 38.0 37.5 38.0 35.0 38.0 46-47 37.01579505651746 38.0 38.0 38.0 36.0 38.0 48-49 36.596748174093676 38.0 37.0 38.0 34.0 38.0 50-51 36.67240864943703 38.0 37.0 38.0 34.0 38.0 52-53 36.59153287736318 38.0 37.0 38.0 34.0 38.0 54-55 36.61771432991172 38.0 37.0 38.0 34.0 38.0 56-57 36.477763168071775 38.0 37.0 38.0 34.0 38.0 58-59 36.480818315414965 38.0 37.0 38.0 34.0 38.0 60-61 36.05386561771433 38.0 37.0 38.0 33.0 38.0 62-63 35.99923206965515 38.0 37.0 38.0 33.0 38.0 64-65 36.481879053733024 38.0 37.0 38.0 34.0 38.0 66-67 36.10349933151387 38.0 37.0 38.0 32.5 38.0 68-69 35.995232202247436 38.0 37.0 38.0 32.0 38.0 70-71 33.24153895450979 37.5 31.0 38.0 20.5 38.0 72-73 28.44372009767632 35.0 20.5 38.0 11.0 38.0 74-75 27.71800934775643 34.0 19.0 38.0 11.0 38.0 76 27.705943449388418 34.0 19.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 2.0 22 3.0 23 7.0 24 31.0 25 66.0 26 132.0 27 245.0 28 419.0 29 698.0 30 1211.0 31 1834.0 32 2860.0 33 4784.0 34 8363.0 35 18864.0 36 19590.0 37 31394.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.397384739524036 11.40832771446573 12.178757364401067 55.01553018160917 2 10.556556136260676 10.523408063821089 59.57703059567086 19.343005204247373 3 10.370926930598985 12.890180436007645 59.170414240411915 17.568478392981447 4 7.474890335127013 46.596245428328345 28.26204656199242 17.666817674552224 5 7.56991480945383 24.883153044650452 59.14942046120019 8.397511684695536 6 16.15416063555904 59.9118261273107 14.571892644442725 9.362120592687535 7 14.185165132647537 22.899793377015126 15.264687358430107 47.65035413190723 8 12.789631282940897 59.49526535031988 11.15432637592124 16.560776990817985 9 12.789631282940897 14.566367965702796 11.3907826259903 61.253218125366004 10-11 13.43878103488282 36.29327204623051 33.05304796526082 17.214898953625845 12-13 13.711700164635426 13.981304487144072 37.01313768604356 35.29385766217694 14-15 13.101223163873021 12.753720871131344 16.740881517739744 57.4041744472559 16-17 34.36626410174248 32.75250544180856 12.554279968619825 20.32695048782913 18-19 35.99770173364419 18.039181021623595 13.449830392362683 32.51328685236953 20-21 14.74592002475056 13.585737489364993 13.169176712374176 58.49916577351028 22-23 12.966421002618697 35.25242257162746 13.130503961194655 38.65065246455919 24-25 34.416918963116835 35.134582661156664 12.77319838235619 17.67529999337031 26-27 35.559042241693646 36.84242511297968 14.480735445233861 13.117797200092815 28-29 14.512778581925462 17.74582058053324 33.39723545075854 34.34416538678276 30-31 12.75316840325735 13.451487795984661 59.03726948277958 14.758074317978409 32-33 31.218302155729642 13.817773996442106 20.839640674894756 34.124283172933495 34-35 16.840325735058506 14.411124493110725 35.32313845949858 33.42541131233219 36-37 12.313956443432815 53.85235848535408 16.04421952863441 17.7894655425787 38-39 12.566986729721666 20.209274830668598 34.83862413400661 32.38511430560313 40-41 12.216169629736031 13.590709700230933 37.853441322387106 36.339679347645934 42-43 33.58912737217204 13.211237258639263 35.545979392834454 17.653655976354244 44-45 13.973017469034177 33.70219771720274 38.54347369700452 13.78131111675856 46-47 33.07735655171652 14.443720097676321 19.844093565959138 32.63482978464802 48-49 32.42212965316067 12.614498966885076 15.703346850380651 39.260024529573606 50-51 15.406122223450106 12.850038678306996 37.19471764835893 34.54912144988396 52-53 11.492232961421774 12.942301209679647 57.55124145515232 18.01422437374625 54-55 11.009225020865461 13.19415656557282 40.59506635492839 35.201552058633325 56-57 32.23909306477556 13.046314055616664 20.0445508161201 34.67004206348768 58-59 13.170664308610588 13.888581850337129 54.966287167016695 17.97446667403559 60-61 32.08052875316379 33.401306409363706 20.353791571338572 14.164373266133934 62-63 12.554155614500443 59.04288240495137 13.862179487179487 14.5407824933687 64-65 10.6636681603943 61.69113543560303 13.403212527420308 14.241983876582365 66-67 10.799533554765866 61.490635172402364 12.945513227922605 14.764318044909169 68-69 10.635887972330115 61.70085805371538 13.093468736014499 14.569785237940009 70-71 11.418499671247107 57.54777967478327 13.59158392591733 17.44213672805229 72-73 12.831621234810767 48.110981560173954 15.654235302568978 23.4031619024463 74-75 13.845975334836227 43.88509481501127 16.765017902134996 25.503911948017503 76 13.746767741507723 44.181934713903686 16.204389241275667 25.866908303312925 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 5.5 12 11.0 13 6.5 14 9.0 15 9.5 16 9.0 17 15.0 18 25.5 19 37.5 20 44.0 21 49.0 22 60.0 23 103.0 24 151.5 25 168.0 26 216.5 27 294.0 28 308.5 29 294.0 30 366.5 31 539.0 32 690.0 33 741.0 34 839.0 35 1056.5 36 1260.0 37 1344.0 38 1681.5 39 6438.0 40 13408.5 41 14544.0 42 13128.0 43 10695.5 44 6684.0 45 4178.5 46 3252.0 47 3098.5 48 2698.0 49 2380.0 50 2309.0 51 2135.0 52 1891.5 53 1764.5 54 1707.0 55 1730.0 56 1633.0 57 1348.5 58 1184.0 59 1157.5 60 1040.0 61 872.0 62 795.0 63 785.5 64 715.0 65 599.5 66 537.0 67 529.0 68 451.5 69 362.5 70 319.0 71 287.0 72 270.5 73 222.5 74 186.0 75 181.0 76 157.5 77 122.0 78 101.0 79 92.0 80 70.5 81 52.5 82 44.5 83 33.0 84 29.5 85 23.0 86 17.0 87 14.0 88 12.0 89 7.0 90 2.5 91 1.5 92 2.0 93 2.0 94 1.0 95 0.0 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03756781543153266 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0011049357479862546 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 5.524678739931273E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.01436416472382131 52-53 0.02707092582566324 54-55 0.04695976928941582 56-57 0.049169640785388324 58-59 0.036462879683546404 60-61 0.02872832944764262 62-63 0.02541352220368386 64-65 0.014916632597814438 66-67 0.03480547606156702 68-69 0.00828701810989691 70-71 0.01049688960586942 72-73 0.021546247085731964 74-75 0.0121542932278488 76 0.00994442173187629 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 90503.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.596002342463784 #Duplication Level Percentage of deduplicated Percentage of total 1 46.287553648068666 9.533385633625405 2 15.815450643776824 6.5147011701269575 3 11.856223175965665 7.325724009148868 4 8.798283261802576 7.24837850678983 5 6.389484978540773 6.579892379258147 6 4.136266094420601 5.111432770184414 7 2.532188841201717 3.6507077113465853 8 1.5665236051502145 2.581129907295891 9 0.7939914163090129 1.4717744163176911 >10 1.6630901287553648 4.870556777123411 >50 0.06974248927038626 0.9701335867319315 >100 0.06437768240343347 2.5634509353281105 >500 0.01072961373390558 1.52812613946499 >1k 0.01072961373390558 6.430726053280002 >5k 0.0 0.0 >10k+ 0.00536480686695279 33.61988000397777 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT 30427 33.61988000397777 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 3622 4.0020772792062145 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 2198 2.4286487740737877 No Hit ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT 719 0.794448802802117 RNA PCR Primer, Index 48 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 664 0.733677336662873 No Hit CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 314 0.34694982486768394 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT 289 0.31932643116802756 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT 283 0.31269681668011007 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAACTCGTATGCCGT 249 0.2751290012485774 No Hit CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 206 0.22761676408516845 RNA PCR Primer, Index 48 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACTTTCGTCATCTCGTATGCCGTC 165 0.182314398417732 No Hit CCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 165 0.182314398417732 No Hit CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 161 0.17789465542578697 No Hit TCTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 132 0.14585151873418561 No Hit TTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 131 0.14474658298619936 No Hit CTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 115 0.1270676110184193 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAGCTCGTATGCCGT 110 0.121542932278488 No Hit TATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCT 92 0.10165408881473544 RNA PCR Primer, Index 48 (95% over 22bp) TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCG 91 0.10054915306674918 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.011049357479862547 0.0 2 0.0 0.0 0.0 0.011049357479862547 0.0 3 0.0 0.0 0.0 0.011049357479862547 0.0 4 0.0 0.0 0.0 0.013259228975835055 0.0 5 0.0 0.0 0.0 0.018783907715766327 0.0 6 0.0 0.0 0.0 0.018783907715766327 0.0 7 0.0 0.0 0.0 0.018783907715766327 0.0 8 0.0 0.0 0.0 0.018783907715766327 0.0 9 0.0 0.0 0.0 0.02651845795167011 0.0 10 0.0 0.0 0.0 0.02872832944764262 0.0 11 0.0 0.0 0.0 0.034253008187573895 0.0 12 0.0 0.0 0.0 0.037567815431532654 0.0 13 0.0 0.0 0.0 0.037567815431532654 0.0 14 0.0 0.0 0.0 0.03977768692750516 0.0 15 0.0 0.0 0.0 0.03977768692750516 0.0 16 0.0 0.0 0.0 0.03977768692750516 0.0 17 0.0 0.0 0.0 0.03977768692750516 0.0 18 0.0 0.0 0.0 0.046407301415422694 0.0 19 0.0 0.0 0.0 0.05524678739931273 0.0 20 0.0 0.0 0.0 0.05524678739931273 0.0 21 0.0 0.0 0.0 0.06519120913118902 0.0 22 0.0 0.0 0.0 0.07734550235903782 0.0 23 0.0 0.0 0.0 0.09391953857883165 0.0 24 0.0 0.0 0.0 0.09944421731876292 0.0 25 0.0 0.0 0.0 0.10165408881473542 0.0 26 0.0 0.0 0.0 0.10275902456272168 0.0 27 0.0 0.0 0.0 0.121542932278488 0.0 28 0.0 0.0 0.0 0.15137619747411687 0.0 29 0.0 0.0 0.0 0.1922588201496083 0.0 30 0.0 0.0 0.0 0.21767234235329216 0.0 31 0.0 0.0 0.0 0.23314144282509972 0.0 32 0.0 0.0 0.0 0.2751290012485774 0.0 33 0.0 0.0 0.0 0.3071721379401788 0.0 34 0.0 0.0 0.0 0.37346828281935407 0.0 35 0.0 0.0 0.0 0.4618631426582544 0.0 36 0.0 0.0 0.0 0.6276035048561927 0.0 37 0.0 0.0 0.0 0.9745533297238765 0.0 38 0.0 0.0 0.0 1.2607316884523165 0.0 39 0.0 0.0 0.0 1.5734285051324266 0.0 40 0.0 0.0 0.0 1.9667856314155332 0.0 41 0.0 0.0 0.0 2.3745069224224613 0.0 42 0.0 0.0 0.0 2.8783576235041934 0.0 43 0.0 0.0 0.0 3.436350176237252 0.0 44 0.0 0.0 0.0 3.8175530092925096 0.0 45 0.0 0.0 0.0 4.322508646122228 0.0 46 0.0 0.0 0.0 4.8031556964962485 0.0 47 0.0 0.0 0.0 5.282697811122283 0.0 48 0.0 0.0 0.0 5.6539562224456645 0.0 49 0.0 0.0 0.0 6.078251549672387 0.0 50 0.0 0.0 0.0 6.47271361170348 0.0 51 0.0 0.0 0.0 6.883749709954366 0.0 52 0.0 0.0 0.0 7.31356971592102 0.0 53 0.0 0.0 0.0 7.731235428659823 0.0 54 0.0 0.0 0.0 8.07708031777952 0.0 55 0.0 0.0 0.0 8.483696673038462 0.0 56 0.0 0.0 0.0 8.871529120581638 0.0 57 0.0 0.0 0.0 9.180911130017789 0.0 58 0.0 0.0 0.0 9.511286918665679 0.0 59 0.0 0.0 0.0 9.822878799597804 0.0 60 0.0 0.0 0.0 10.222865540368828 0.0 61 0.0 0.0 0.0 10.570920300984497 0.0 62 0.0 0.0 0.0 10.931129354828016 0.0 63 0.0 0.0 0.0 11.249350850248058 0.0 64 0.0 0.0 0.0 11.532214401732539 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAAGTTA 15 0.002218339 69.99944 28 CTCGTCT 25 2.8200193E-6 69.99944 39 ACCGCTC 15 0.002218339 69.99944 33 CGTTGGT 15 0.002218339 69.99944 21 GACCGCT 15 0.002218339 69.99944 32 TTCCGTT 15 0.002218339 69.99944 18 ACCTCGC 15 0.002218339 69.99944 37 TAGTTCG 15 0.002218339 69.99944 54 TGACCGC 15 0.002218339 69.99944 31 CGCTCCA 15 0.002218339 69.99944 34 TTGACCG 15 0.002218339 69.99944 30 AGTTCGC 15 0.002218339 69.99944 55 ACTAAAG 15 0.002218339 69.99944 3 ACACTTA 15 0.002218339 69.99944 6 GACTGGT 15 0.002218339 69.99944 65 TAAGCAA 15 0.002218339 69.99944 23 CTGGCTA 15 0.002218339 69.99944 14 ACTGGTG 15 0.002218339 69.99944 66 GTCAAGC 40 1.0524673E-8 61.249516 33 GCTCGTA 40 1.0524673E-8 61.249516 38 >>END_MODULE