##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779849_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 187991 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.085844535110724 34.0 23.0 34.0 12.0 34.0 2 28.745854854753684 34.0 23.0 34.0 12.0 34.0 3 28.472783271539594 34.0 23.0 34.0 11.0 34.0 4 28.89767063316861 34.0 23.0 34.0 12.0 34.0 5 29.11769712379848 34.0 27.0 34.0 11.0 34.0 6 31.473474794006098 37.0 27.0 38.0 12.0 38.0 7 31.604832146219767 37.0 27.0 38.0 12.0 38.0 8 30.984658840050855 37.0 26.0 38.0 11.0 38.0 9 32.035012314419305 37.0 31.0 38.0 12.0 38.0 10-11 30.633142012117602 36.5 25.5 38.0 11.0 38.0 12-13 31.436691118191828 37.0 27.0 38.0 11.0 38.0 14-15 30.29868983089616 36.5 24.5 38.0 11.0 38.0 16-17 30.88081344319675 36.5 25.0 38.0 11.0 38.0 18-19 31.642278087780795 37.0 27.5 38.0 11.0 38.0 20-21 30.483384842891414 36.5 25.0 38.0 11.0 38.0 22-23 31.311480336824637 37.0 27.0 38.0 11.0 38.0 24-25 31.601954348878404 37.0 27.5 38.0 11.0 38.0 26-27 30.51864184987579 37.0 24.5 38.0 11.0 38.0 28-29 31.680069790575082 37.0 29.0 38.0 11.0 38.0 30-31 32.09334755387226 37.5 31.0 38.0 11.0 38.0 32-33 32.19498539823715 38.0 31.0 38.0 11.0 38.0 34-35 32.15685059391141 37.5 31.0 38.0 11.0 38.0 36-37 31.675965870706577 37.0 28.0 38.0 11.0 38.0 38-39 31.58556526642233 37.0 28.0 38.0 11.0 38.0 40-41 31.539903506018906 37.0 27.0 38.0 11.0 38.0 42-43 31.940885467921337 37.0 29.0 38.0 11.0 38.0 44-45 32.00286981823598 37.0 31.0 38.0 11.0 38.0 46-47 31.876932938278962 37.0 29.0 38.0 11.0 38.0 48-49 31.582272555601065 37.0 27.0 38.0 11.0 38.0 50-51 30.96113111797905 37.0 25.5 38.0 11.0 38.0 52-53 31.501968179327733 37.0 27.0 38.0 11.0 38.0 54-55 31.63663154087164 37.0 28.0 38.0 11.0 38.0 56-57 31.68913671399163 37.0 27.0 38.0 11.0 38.0 58-59 31.939193897580203 37.0 30.0 38.0 11.0 38.0 60-61 31.80745088860637 37.0 27.5 38.0 11.0 38.0 62-63 31.77318595039124 37.0 27.0 38.0 11.0 38.0 64-65 31.800054257916603 37.0 28.5 38.0 11.0 38.0 66-67 31.7025283125256 37.0 27.0 38.0 11.0 38.0 68-69 31.078176614837943 37.0 25.5 38.0 11.0 38.0 70-71 31.11100797378598 37.0 26.0 38.0 11.0 38.0 72-73 31.251921634546335 37.0 27.0 38.0 11.0 38.0 74-75 31.464750972121006 37.0 27.0 38.0 11.0 38.0 76 30.310456351633857 36.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 57.0 13 576.0 14 2062.0 15 3620.0 16 5102.0 17 5878.0 18 5885.0 19 5290.0 20 4316.0 21 3237.0 22 2664.0 23 2377.0 24 2250.0 25 2297.0 26 2427.0 27 2673.0 28 3188.0 29 3689.0 30 4395.0 31 5452.0 32 6742.0 33 8521.0 34 11694.0 35 16722.0 36 27808.0 37 49068.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 38.0996962620551 22.753216909320127 9.098307897718508 30.048778930906266 2 19.78286194551867 20.86589251613109 29.012559111872378 30.338686426477864 3 20.832380273523732 20.323313350107185 29.880685777510624 28.96362059885846 4 14.224085195567874 22.167018633870768 30.12644222329792 33.48245394726344 5 17.907772180583112 30.60731630769558 31.944082429478005 19.5408290822433 6 27.24269634231972 35.69855522692938 15.975487797093432 21.083260633657467 7 26.815580049365906 27.186888245808156 20.284705081283512 25.71282662354243 8 23.58911615288454 34.483070457749285 16.77953028167141 25.148283107694763 9 24.117862975513482 17.324091264542695 17.549645974859164 41.00839978508466 10-11 23.101331475048806 25.86428848803375 23.02685824019746 28.007521796719985 12-13 23.430376986132316 21.823917102414477 24.859966700533537 29.88573921091967 14-15 25.329404067215982 24.016841231761095 21.283997638184807 29.369757062838115 16-17 26.496747184705647 24.54266427648132 21.619386034437817 27.34120250437521 18-19 22.94109198459476 24.652637402387388 23.979456135498012 28.42681447751984 20-21 24.850657744253716 23.980137347000653 23.33542563207813 27.833779276667496 22-23 26.44929463582782 23.490329169947017 22.27482605272677 27.785550141498394 24-25 22.993488946102943 27.076196352958696 21.76335723556823 28.16695746537013 26-27 24.304750252673017 27.067397201978828 23.211872971966592 25.415979573381563 28-29 22.957534811347102 26.535090635847375 24.324187735234272 26.18318681757125 30-31 23.907591075080923 25.6278907710762 24.324101483851575 26.1404166699913 32-33 21.89838875265305 26.98613231484486 24.30754663787096 26.807932294631126 34-35 22.117428020480084 27.79360329809163 24.07500498703371 26.013963694394576 36-37 24.87523808510412 25.084859383479284 23.728971365943455 26.31093116547314 38-39 24.791594626945074 24.45325176220242 24.98869530522676 25.76645830562575 40-41 22.711580403212935 25.699505292834722 24.821001117080694 26.767913186871645 42-43 21.04994388029214 25.37754466969163 25.486060502896414 28.086450947119808 44-45 20.71112624246277 23.84225211255243 27.213026675213513 28.233594969771282 46-47 21.338748543797774 24.92220289485023 26.459792860220542 27.27925570113145 48-49 21.452622731939293 25.3442983972637 25.917464133921303 27.2856147368757 50-51 23.87386428920995 25.288050301083047 23.984775623976 26.853309785731007 52-53 19.131533448596887 26.67641973666711 25.801037371990954 28.391009442745048 54-55 20.031439180347054 25.302688555287205 25.291783255843647 29.37408900852209 56-57 20.97386844849233 25.96610133424127 24.68798544464069 28.37204477262571 58-59 20.356809409937146 25.632875196505857 25.13838534033085 28.87193005322615 60-61 19.631503620585995 24.889733071565765 25.19858688076274 30.280176427085493 62-63 20.70781630291665 25.23587226854992 24.689249757278326 29.3670616712551 64-65 21.257086005687427 24.464974981179356 24.21092954029746 30.06700947283576 66-67 20.0901775620137 27.403338431868058 22.699208618740442 29.807275387377803 68-69 20.908979685197696 28.558282045417066 22.032969663441335 28.499768605943903 70-71 20.307463162934198 28.536092345337515 23.08979201021331 28.066652481514975 72-73 20.909381067638375 27.480118094528823 23.93196265659494 27.678538181237865 74-75 21.02991049460707 27.647989786011625 22.62983601760849 28.69226370177282 76 21.81640219802433 27.349231595801836 21.808954874539197 29.025411331634633 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 0.5 10 0.0 11 0.0 12 0.0 13 0.5 14 4.5 15 18.0 16 29.0 17 30.0 18 29.5 19 41.0 20 86.0 21 119.0 22 178.0 23 259.0 24 355.5 25 430.0 26 520.0 27 673.5 28 880.0 29 1023.0 30 1214.0 31 1660.0 32 2156.5 33 2398.0 34 2671.0 35 3239.5 36 3929.0 37 4323.0 38 4808.5 39 5707.5 40 6586.0 41 7461.0 42 7871.0 43 8208.5 44 8993.5 45 9629.5 46 9818.0 47 9788.5 48 9689.0 49 9538.0 50 9457.0 51 9315.0 52 8702.5 53 7952.0 54 7672.0 55 7447.5 56 6989.5 57 6409.0 58 6062.0 59 5637.0 60 4835.0 61 4156.5 62 3855.0 63 3703.5 64 3305.0 65 2857.5 66 2466.5 67 2276.0 68 2221.0 69 2007.0 70 1728.0 71 1608.0 72 1497.5 73 1353.5 74 1236.5 75 1153.0 76 1088.0 77 974.5 78 843.5 79 761.0 80 682.5 81 537.5 82 437.5 83 404.0 84 335.0 85 250.5 86 191.5 87 148.0 88 135.5 89 99.5 90 63.0 91 46.5 92 43.0 93 38.0 94 30.5 95 22.5 96 17.0 97 11.0 98 9.5 99 13.0 100 12.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0015958210765408983 7 0.0037235825119287624 8 0.0031916421530817965 9 0.0053194035884696605 10-11 0.0021277614353878644 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0015958210765408983 20-21 0.0 22-23 0.0015958210765408983 24-25 0.0015958210765408983 26-27 5.319403588469661E-4 28-29 0.007181194844434042 30-31 2.6597017942348305E-4 32-33 0.0 34-35 0.0018617912559643812 36-37 0.01755403184194988 38-39 0.008511045741551457 40-41 5.319403588469661E-4 42-43 0.0 44-45 0.003989552691352246 46-47 0.0010638807176939322 48-49 0.0 50-51 0.0015958210765408983 52-53 0.008511045741551457 54-55 0.004787463229622695 56-57 0.010106866818092355 58-59 0.010372836997515839 60-61 0.02021373363618471 62-63 0.009840896638668873 64-65 0.017288061662526395 66-67 0.015160300227138533 68-69 0.0 70-71 5.319403588469661E-4 72-73 0.0031916421530817965 74-75 0.007181194844434042 76 0.0021277614353878644 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 187991.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.98446699741679 #Duplication Level Percentage of deduplicated Percentage of total 1 76.4585069867829 48.92156816967571 2 9.7815068725553 12.517290073440401 3 5.654301976008956 10.853624945321206 4 3.691497685094667 9.447940472119209 5 2.020131765222534 6.462852713115727 6 1.053015907828374 4.042599696131968 7 0.5560758002001723 2.4906149580179044 8 0.26066843126081907 1.3342984509821028 9 0.1843465529172578 1.0615784338099647 >10 0.3399480221290277 2.867632087385831 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.008511045741551457 0.0 2 0.0 0.0 0.0 0.008511045741551457 0.0 3 0.0 0.0 0.0 0.008511045741551457 0.0 4 0.0 0.0 0.0 0.01489433004771505 0.0 5 0.0 0.0 0.0 0.015426270406562016 0.0 6 0.0 0.0 0.0 0.015426270406562016 0.0 7 0.0 0.0 0.0 0.01755403184194988 0.0 8 0.0 0.0 0.0 0.01755403184194988 0.0 9 0.0 0.0 0.0 0.018085972200796847 0.0 10 0.0 0.0 0.0 0.021277614353878642 0.0 11 0.0 0.0 0.0 0.02287343543041954 0.0 12 0.0 0.0 0.0 0.02287343543041954 0.0 13 0.0 0.0 0.0 0.02340537578926651 0.0 14 0.0 0.0 0.0 0.02446925650696044 0.0 15 0.0 0.0 0.0 0.02446925650696044 0.0 16 0.0 0.0 0.0 0.02446925650696044 0.0 17 0.0 0.0 0.0 0.027660898660042236 0.0 18 0.0 0.0 0.0 0.028192839018889203 0.0 19 0.0 0.0 0.0 0.028192839018889203 0.0 20 0.0 0.0 0.0 0.0297886600954301 0.0 21 0.0 0.0 0.0 0.032448361889664934 0.0 22 0.0 0.0 0.0 0.04681075157853302 0.0 23 0.0 0.0 0.0 0.05000239373161481 0.0 24 0.0 0.0 0.0 0.05000239373161481 0.0 25 0.0 0.0 0.0 0.05266209552584964 0.0 26 0.0 0.0 0.0 0.05691761839662537 0.0 27 0.0 0.0 0.0 0.08298269598012671 0.0 28 0.0 0.0 0.0 0.09894090674553568 0.0 29 0.0 0.0 0.0 0.13724061258251724 0.0 30 0.0 0.0 0.0 0.16490151124255947 0.0 31 0.0 0.0 0.0 0.19947763456761228 0.0 32 0.0 0.0 0.0 0.24096898255767563 0.0 33 0.0 0.0 0.0 0.29895048167199495 0.0 34 0.0 0.0 0.0 0.37235825119287624 0.0 35 0.0 0.0 0.0 0.4643839332734014 0.0 36 0.0 0.0 0.0 0.6244979812863382 0.0 37 0.0 0.0 0.0 0.9787702602784176 0.0 38 0.0 0.0 0.0 1.348468809677059 0.0 39 0.0 0.0 0.0 1.8564718523759116 0.0 40 0.0 0.0 0.0 2.369794298663234 0.0 41 0.0 0.0 0.0 2.980461830619551 0.0 42 0.0 0.0 0.0 3.7081562415222007 0.0 43 0.0 0.0 0.0 4.343293029985478 0.0 44 0.0 0.0 0.0 5.009814299620727 0.0 45 0.0 0.0 0.0 5.724742141911049 0.0 46 0.0 0.0 0.0 6.412541025900176 0.0 47 0.0 0.0 0.0 7.1147022995781715 0.0 48 0.0 0.0 0.0 7.687602066056353 0.0 49 0.0 0.0 0.0 8.313695868419233 0.0 50 0.0 0.0 0.0 8.928086982887478 0.0 51 0.0 0.0 0.0 9.577586161039624 0.0 52 0.0 0.0 0.0 10.222829816320994 0.0 53 0.0 0.0 0.0 10.90211765456857 0.0 54 0.0 0.0 0.0 11.52980727800799 0.0 55 0.0 0.0 0.0 12.144730332835083 0.0 56 0.0 0.0 0.0 12.775611598427584 0.0 57 0.0 0.0 0.0 13.306488076556857 0.0 58 0.0 0.0 0.0 13.867685155140405 0.0 59 0.0 0.0 0.0 14.275151470017182 0.0 60 0.0 0.0 0.0 14.744854806879053 0.0 61 0.0 0.0 0.0 15.17838619933933 0.0 62 0.0 0.0 0.0 15.626279981488475 0.0 63 0.0 0.0 0.0 16.131623322393093 0.0 64 0.0 0.0 0.0 16.617284870020374 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTGGT 75 0.0 56.004898 46 GCCGTAA 25 2.3848431E-4 56.004898 54 CAACGGG 25 2.3911255E-4 55.9751 20 AGCGTAA 20 0.006933327 52.51857 35 GTCCGCA 20 0.006940632 52.50459 56 ATTGCGA 20 0.006940632 52.50459 48 TTCGGTA 20 0.006947943 52.49062 26 GACGAAT 40 7.4597665E-7 52.49062 23 TCGCCGT 75 0.0 51.337822 52 GCGATCT 35 2.0829517E-5 49.991066 28 ACGAGCG 35 2.0829517E-5 49.991066 24 ATCCCGG 30 5.864255E-4 46.670746 42 CGACGAA 205 0.0 46.07706 22 GACGACC 55 1.3066165E-7 44.537495 23 CGCCGTA 90 1.8189894E-12 42.781517 53 GGTGGTC 100 0.0 42.003674 47 GCGTAGA 35 0.0012509114 40.01415 36 ACACGTA 35 0.0012541916 39.992855 10 GACGGTG 35 0.0012558344 39.982212 14 GATCTCG 80 1.4097168E-9 39.37844 41 >>END_MODULE