SRR1779849_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779849_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	187991
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	25840	13.745338872605602	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	3259	1.7335936294822625	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	1801	0.9580245862833859	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	701	0.3728901915517232	TruSeq Adapter, Index 2 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	609	0.3239516785378023	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT	370	0.19681793277337745	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTAACTCGTATGCCGT	357	0.18990270810836687	No Hit
CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC	263	0.13990031437675207	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	200	0.10638807176939322	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGAGA	15	0.0022069844	70.119736	51
GCCGTAT	15	0.0022139975	70.06368	46
CATCGCA	15	0.0022280738	69.95185	9
CGTATAT	30	8.387096E-6	58.29321	34
CACGGAT	30	8.387096E-6	58.29321	32
ATATCGT	30	8.387096E-6	58.29321	37
ACGTATA	30	8.387096E-6	58.29321	33
TATCGTA	30	8.387096E-6	58.29321	38
AACCGAG	25	2.3940025E-4	55.96148	23
ATCTCGT	3675	0.0	54.343544	37
TCTCGTA	3665	0.0	54.300957	38
GTATCTC	3590	0.0	54.26627	35
CGTATCT	3595	0.0	54.093502	34
TATCTCG	3615	0.0	54.084488	36
CGTCTTC	3795	0.0	54.00165	48
CGTATGC	3880	0.0	53.906197	41
TCGTATG	3895	0.0	53.878185	40
CCGTCTT	3805	0.0	53.859734	47
TATGCCG	3855	0.0	53.80213	43
GCCGTCT	3825	0.0	53.761284	46