SRR1779848_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779848_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	55184
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	14998	27.178167584807188	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	1895	3.433966367062917	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	1153	2.0893737315163814	No Hit
ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT	496	0.8988112496375761	RNA PCR Primer, Index 47 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	409	0.7411568570600174	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAACTCGTATGCCGT	248	0.44940562481878804	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT	208	0.37692084662220937	No Hit
CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC	162	0.2935633516961438	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATATCGTATGCCGT	126	0.22832705131922296	No Hit
CTTTACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC	124	0.22470281240939402	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAGCTCGTATGCCGT	111	0.20114525949550596	No Hit
CTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	105	0.19027254276601915	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCG	79	0.14315743693824298	No Hit
CTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	79	0.14315743693824298	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATGGTAGATCTCGTATGCCGT	74	0.13409683966367061	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	63	0.11416352565961148	No Hit
CCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	56	0.1014786894752102	No Hit
TTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC	56	0.1014786894752102	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCCATA	15	0.0022058138	70.06261	1
AGACTCG	15	0.0022137736	69.99909	60
CTCCGGA	15	0.0022137736	69.99909	34
CGTGCTA	15	0.0022137736	69.99909	65
CGTGCGT	15	0.0022137736	69.99909	40
GCGGTAC	15	0.0022137736	69.99909	3
TTCGTGG	15	0.0022137736	69.99909	46
ACGGGAG	15	0.0022137736	69.99909	55
GCACCAA	15	0.0022137736	69.99909	13
AGCGGTA	15	0.0022137736	69.99909	2
GAGACTC	15	0.0022137736	69.99909	59
CCTCAGT	15	0.0022137736	69.99909	9
ACGGACG	15	0.0022137736	69.99909	34
CTTGACA	15	0.0022137736	69.99909	57
CGGTACG	15	0.0022137736	69.99909	4
CCAAAAT	15	0.0022137736	69.99909	16
GTGCGTT	15	0.0022137736	69.99909	41
AGTCGCG	15	0.0022137736	69.99909	35
TCTTTAT	90	0.0	62.27788	1
TTTATAC	105	0.0	53.33265	3