##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779847_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 737777 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.539019242941976 34.0 34.0 34.0 34.0 34.0 2 33.602454400177834 34.0 34.0 34.0 34.0 34.0 3 33.73862020637672 34.0 34.0 34.0 34.0 34.0 4 33.57173373526147 34.0 34.0 34.0 34.0 34.0 5 33.58768977617898 34.0 34.0 34.0 34.0 34.0 6 37.257324367661234 38.0 38.0 38.0 36.0 38.0 7 37.34178484826716 38.0 38.0 38.0 37.0 38.0 8 37.238351154888264 38.0 38.0 38.0 36.0 38.0 9 37.14088674491072 38.0 38.0 38.0 36.0 38.0 10-11 37.09626960450109 38.0 37.5 38.0 35.5 38.0 12-13 37.25262985970015 38.0 38.0 38.0 36.5 38.0 14-15 37.27726874109656 38.0 38.0 38.0 36.0 38.0 16-17 37.233829463374434 38.0 38.0 38.0 36.0 38.0 18-19 37.124072043449445 38.0 38.0 38.0 36.0 38.0 20-21 37.106787010167025 38.0 38.0 38.0 36.0 38.0 22-23 37.0674905831979 38.0 38.0 38.0 36.0 38.0 24-25 37.2828815482185 38.0 38.0 38.0 36.5 38.0 26-27 37.20887137983429 38.0 38.0 38.0 36.0 38.0 28-29 36.752696275432825 38.0 37.0 38.0 34.5 38.0 30-31 37.05892905308786 38.0 38.0 38.0 36.0 38.0 32-33 37.120826482799 38.0 38.0 38.0 36.0 38.0 34-35 37.20961957339413 38.0 38.0 38.0 36.0 38.0 36-37 37.18121261573619 38.0 38.0 38.0 36.0 38.0 38-39 36.99924977330548 38.0 38.0 38.0 36.0 38.0 40-41 37.01941575842022 38.0 38.0 38.0 36.0 38.0 42-43 37.2039728806943 38.0 38.0 38.0 36.0 38.0 44-45 36.9796774635154 38.0 38.0 38.0 35.5 38.0 46-47 37.10576502113783 38.0 38.0 38.0 36.0 38.0 48-49 36.780243217123875 38.0 37.0 38.0 35.0 38.0 50-51 36.98061338317676 38.0 37.5 38.0 35.5 38.0 52-53 36.91410209317992 38.0 38.0 38.0 35.5 38.0 54-55 36.90414447726074 38.0 37.5 38.0 35.5 38.0 56-57 36.78316957563057 38.0 37.0 38.0 35.0 38.0 58-59 36.91452227434577 38.0 37.5 38.0 35.5 38.0 60-61 36.63142589156344 38.0 37.0 38.0 34.0 38.0 62-63 36.433101736703634 38.0 37.0 38.0 34.0 38.0 64-65 36.734240834290034 38.0 37.0 38.0 34.5 38.0 66-67 36.56816693933261 38.0 37.0 38.0 34.5 38.0 68-69 36.72185701099384 38.0 37.0 38.0 34.5 38.0 70-71 36.52527457483765 38.0 37.0 38.0 34.0 38.0 72-73 36.191776105788065 38.0 37.0 38.0 34.0 38.0 74-75 36.15591364328246 38.0 37.0 38.0 34.0 38.0 76 35.861172142801955 38.0 37.0 38.0 32.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 10.0 22 35.0 23 72.0 24 153.0 25 327.0 26 549.0 27 1021.0 28 1811.0 29 2998.0 30 5043.0 31 8250.0 32 12928.0 33 20613.0 34 33930.0 35 60608.0 36 109004.0 37 480424.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.99984811458669 18.332840609819932 10.444563180263575 27.222748095329795 2 21.980354497361667 21.456212378537145 32.74268512030058 23.820748003800606 3 19.55943327048688 22.343065723111454 31.869114922259705 26.22838608414196 4 14.039743716597291 20.044674745892053 36.58381868776067 29.331762849749992 5 13.71905060743287 32.88486900513299 37.43705753906668 15.95902284836746 6 27.702815349353532 39.28151731485259 19.054673702216252 13.960993633577626 7 26.659004007986155 30.183510735628786 22.3227343763766 20.834750880008457 8 24.120025427737648 36.54302045197939 20.42961491073861 18.907339209544347 9 23.76246480982736 17.928452635416935 21.126031307563125 37.18305124719258 10-11 24.297043686642443 26.185961340621894 27.601633013769742 21.91536195896592 12-13 24.345635605338742 23.20504705351346 27.318417353753233 25.130899987394567 14-15 22.39816367276291 23.48162114026325 23.800552199377318 30.319662987596523 16-17 24.229204759703812 28.096226908672943 24.42899412695164 23.245574204671602 18-19 23.484264215338783 26.60600696416397 26.179590851978308 23.730137968518942 20-21 21.99370541505089 26.288634641632907 25.78143531175409 25.936224631562112 22-23 22.16665740460871 28.001686146355876 26.00386024503339 23.827796204002023 24-25 23.840156579539478 27.61625542850637 25.780661234094005 22.762926757860154 26-27 23.611131818964267 28.134314298222908 25.889191449448816 22.365362433364012 28-29 23.326967362766798 26.249666227057773 26.724335402160815 23.699031008014618 30-31 22.35485790421767 25.962587611161638 29.51230520875549 22.1702492758652 32-33 21.22429948344825 29.83889440847302 27.024968249213515 21.911837858865212 34-35 21.95649905052611 27.73947954463205 26.52474934838034 23.779272056461505 36-37 23.920507145112953 27.8617387096643 25.885802891659676 22.33195125356307 38-39 21.70432257985814 26.378702507668304 28.215978540941233 23.70099637153232 40-41 21.77602446267639 25.093896936337128 28.65018833604192 24.479890264944558 42-43 22.99069702192201 25.085510545566432 29.00703399209379 22.91675844041777 44-45 21.07926921007296 26.394222102342578 29.62541526775706 22.9010934198274 46-47 22.499481550658263 24.704619417520473 28.428644427787802 24.367254604033466 48-49 21.82847933725231 24.736675174205754 28.536603878949872 24.89824160959206 50-51 20.54712997387034 25.09680852145445 29.6794965211291 24.676564983546108 52-53 19.40279889714531 25.392910626602877 31.654261698171148 23.550028778080662 54-55 19.156208723104758 25.262409173878964 30.084838852288726 25.49654325072756 56-57 20.53902602096378 25.198171331236686 28.426956996990643 25.835845650808892 58-59 18.964468739555162 24.791882907991873 31.447833270395947 24.795815082057015 60-61 20.761154891230657 26.545915793926707 27.94417537598776 24.74875393885487 62-63 18.890959540048797 28.938257611450783 27.056096719369975 25.114686129130448 64-65 19.1495317917312 29.39324410884529 25.87044712788203 25.586776971541482 66-67 19.188180123890938 29.21714947793468 25.158117893677794 26.43655250449659 68-69 19.02686626646397 29.454277056212508 25.344054807481808 26.17480186984172 70-71 19.879106898484633 28.71231495106595 25.071965827839165 26.336612322610247 72-73 20.217486500300293 28.108726981368175 25.177228043584066 26.496558474747463 74-75 20.39677472267522 28.044133376170745 24.99000234521258 26.569089555941456 76 20.334916230274224 28.26724975836308 24.93909936191585 26.458734649446846 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 0.0 8 0.0 9 0.5 10 1.5 11 4.5 12 7.0 13 12.5 14 23.5 15 63.5 16 145.0 17 192.0 18 252.0 19 395.5 20 643.0 21 807.0 22 1034.5 23 1554.0 24 2288.0 25 2730.0 26 3362.0 27 4435.5 28 5693.0 29 6509.0 30 7505.5 31 9355.0 32 11815.5 33 13423.0 34 15133.5 35 18188.5 36 21730.5 37 23928.0 38 26300.5 39 34596.5 40 43619.5 41 47066.5 42 47414.0 43 46420.5 44 45403.0 45 44782.0 46 44185.0 47 43514.0 48 41402.5 49 38069.5 50 36177.0 51 34405.5 52 29673.5 53 25381.0 54 24049.0 55 22369.0 56 18922.5 57 15352.0 58 13548.0 59 12053.5 60 9789.0 61 8168.0 62 7317.0 63 6809.0 64 5701.0 65 4758.0 66 4227.0 67 4039.0 68 3747.0 69 3270.0 70 2997.5 71 2910.0 72 2681.5 73 2296.5 74 1986.0 75 1832.0 76 1642.0 77 1366.5 78 1171.5 79 1062.0 80 997.5 81 880.0 82 747.5 83 668.0 84 561.5 85 376.0 86 266.0 87 235.0 88 168.0 89 86.5 90 55.0 91 28.0 92 18.0 93 15.5 94 10.0 95 4.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05137053608339647 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.777115578284495E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 3.388557789142247E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.014841883116443046 52-53 0.03205575668528566 54-55 0.05137053608339647 56-57 0.055572347741932863 58-59 0.03679973759008481 60-61 0.03429220482611955 62-63 0.029887079700234624 64-65 0.016875017789928393 66-67 0.037070822213216184 68-69 0.009149106030684069 70-71 0.013622002312351836 72-73 0.022771108343035903 74-75 0.014096400402831749 76 0.01355423115656899 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 737777.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.710930200557637 #Duplication Level Percentage of deduplicated Percentage of total 1 36.53562257154911 9.759004643425666 2 19.35154649478406 10.337956153900459 3 15.387292878734863 12.330267181782736 4 10.380368620879489 11.090772067534832 5 6.500039810958504 8.681105484567924 6 3.4588411868280025 5.543331930970603 7 1.9184604546254413 3.587070430722117 8 1.1008057692879993 2.3522836854258324 9 0.6856342321336788 1.6482535305872064 >10 4.265437127163608 22.78260738054667 >50 0.354781611423056 6.375428556703501 >100 0.05913026691112407 2.1296359951804322 >500 5.097436802683089E-4 0.07652039059468059 >1k 0.0010194873605366178 0.5764899177542306 >5k 0.0 0.0 >10k+ 5.097436802683089E-4 2.729272650303154 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT 20045 2.716945635334254 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG 2623 0.3555274832368046 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC 1611 0.21835866393232645 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.006099404020456046 0.0 2 0.0 0.0 0.0 0.0062349463320217355 0.0 3 0.0 0.0 0.0 0.0062349463320217355 0.0 4 0.0 0.0 0.0 0.008945792563335534 0.0 5 0.0 0.0 0.0 0.010707842613689502 0.0 6 0.0 0.0 0.0 0.010707842613689502 0.0 7 0.0 0.0 0.0 0.011385554171517952 0.0 8 0.0 0.0 0.0 0.012198808040912092 0.0 9 0.0 0.0 0.0 0.0134186888450033 0.0 10 0.0 0.0 0.0 0.0147741119606602 0.0 11 0.0 0.0 0.0 0.01599399276475141 0.0 12 0.0 0.0 0.0 0.016671704322579858 0.0 13 0.0 0.0 0.0 0.01694278894571124 0.0 14 0.0 0.0 0.0 0.017620500503539686 0.0 15 0.0 0.0 0.0 0.018840381307630896 0.0 16 0.0 0.0 0.0 0.019653635177025036 0.0 17 0.0 0.0 0.0 0.020331346734853487 0.0 18 0.0 0.0 0.0 0.021280142915813316 0.0 19 0.0 0.0 0.0 0.022771108343035903 0.0 20 0.0 0.0 0.0 0.023719904523995732 0.0 21 0.0 0.0 0.0 0.026024123820612463 0.0 22 0.0 0.0 0.0 0.026566293066875222 0.0 23 0.0 0.0 0.0 0.02792171618253212 0.0 24 0.0 0.0 0.0 0.029006054675057638 0.0 25 0.0 0.0 0.0 0.031310273971674366 0.0 26 0.0 0.0 0.0 0.039849439600312835 0.0 27 0.0 0.0 0.0 0.09515070271911431 0.0 28 0.0 0.0 0.0 0.1409640040283175 0.0 29 0.0 0.0 0.0 0.17403632805034583 0.0 30 0.0 0.0 0.0 0.21280142915813316 0.0 31 0.0 0.0 0.0 0.2624099151911757 0.0 32 0.0 0.0 0.0 0.3076810472541161 0.0 33 0.0 0.0 0.0 0.3517322985129653 0.0 34 0.0 0.0 0.0 0.4199100812305073 0.0 35 0.0 0.0 0.0 0.534578876815081 0.0 36 0.0 0.0 0.0 0.7446694597419004 0.0 37 0.0 0.0 0.0 1.1083294816726463 0.0 38 0.0 0.0 0.0 1.6152577269283266 0.0 39 0.0 0.0 0.0 2.1830444700770015 0.0 40 0.0 0.0 0.0 2.8909819633846 0.0 41 0.0 0.0 0.0 3.7504557610226397 0.0 42 0.0 0.0 0.0 4.751842358869957 0.0 43 0.0 0.0 0.0 5.78982538084001 0.0 44 0.0 0.0 0.0 6.6453684514426445 0.0 45 0.0 0.0 0.0 7.486544037019316 0.0 46 0.0 0.0 0.0 8.354150373351297 0.0 47 0.0 0.0 0.0 9.20250970144095 0.0 48 0.0 0.0 0.0 9.998820781889378 0.0 49 0.0 0.0 0.0 10.797707166257554 0.0 50 0.0 0.0 0.0 11.640915886507711 0.0 51 0.0 0.0 0.0 12.567347586059203 0.0 52 0.0 0.0 0.0 13.607228200391175 0.0 53 0.0 0.0 0.0 14.677605834825428 0.0 54 0.0 0.0 0.0 15.62314900030768 0.0 55 0.0 0.0 0.0 16.419324538444542 0.0 56 0.0 0.0 0.0 17.175244010046395 0.0 57 0.0 0.0 0.0 17.916118285064456 0.0 58 0.0 0.0 0.0 18.633950367116352 0.0 59 0.0 0.0 0.0 19.28428237800853 0.0 60 0.0 0.0 0.0 19.97676804779764 0.0 61 0.0 0.0 0.0 20.672235648441195 0.0 62 0.0 0.0 0.0 21.373260483858942 0.0 63 0.0 0.0 0.0 22.132975140184637 0.0 64 0.0 0.0 0.0 22.86178614947335 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATACCG 20 0.0069563803 52.489834 30 TCGTATG 2975 0.0 50.813683 40 TATGCCG 2975 0.0 50.69606 43 CGTATGC 2985 0.0 50.52623 41 CCGTCTT 2990 0.0 50.465675 47 GCCGTCT 2995 0.0 50.381428 46 TCTCGTA 2860 0.0 50.28746 38 CTCGTAT 2975 0.0 50.107937 39 CGTCTTC 3030 0.0 50.030552 48 ATCTCGT 2900 0.0 49.35251 37 ATGCCGT 3080 0.0 48.854176 44 TGCCGTC 3090 0.0 48.82255 45 GTATGCC 3095 0.0 48.730465 42 GATCTCG 2970 0.0 48.18932 36 GTCTTCT 3190 0.0 47.52118 49 AGATCTC 3010 0.0 47.20016 35 CTGCTTG 3255 0.0 46.578537 54 CTTGAAA 3140 0.0 46.500256 57 TCTTCTG 3285 0.0 46.366337 50 ACAGATC 3075 0.0 46.202435 33 >>END_MODULE