##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779846_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 259756 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.96644158364003 34.0 23.0 34.0 12.0 34.0 2 29.851914873958638 34.0 31.0 34.0 12.0 34.0 3 29.540765179630114 34.0 31.0 34.0 11.0 34.0 4 29.61418793021143 34.0 27.0 34.0 12.0 34.0 5 30.418354147738647 34.0 32.0 34.0 12.0 34.0 6 32.859679853400884 37.0 34.0 38.0 12.0 38.0 7 33.15149986910793 38.0 34.0 38.0 12.0 38.0 8 32.39978287315789 37.0 31.0 38.0 11.0 38.0 9 33.33668519687707 38.0 34.0 38.0 21.0 38.0 10-11 31.841428109456565 37.0 28.5 38.0 11.5 38.0 12-13 32.71768505828547 37.0 32.0 38.0 11.0 38.0 14-15 31.510646529820292 37.0 28.5 38.0 11.0 38.0 16-17 32.144907143627094 37.0 30.5 38.0 11.5 38.0 18-19 33.02115831780594 37.5 34.0 38.0 11.5 38.0 20-21 31.660521797379076 37.0 28.0 38.0 11.0 38.0 22-23 32.606084171299216 37.0 32.5 38.0 11.0 38.0 24-25 32.91248517839819 37.5 33.0 38.0 11.0 38.0 26-27 31.805829316743406 37.0 29.0 38.0 11.0 38.0 28-29 33.05751743944317 37.5 33.0 38.0 16.0 38.0 30-31 33.50474483746285 38.0 34.0 38.0 21.0 38.0 32-33 33.594174917999965 38.0 34.0 38.0 21.0 38.0 34-35 33.52565292043302 38.0 34.0 38.0 21.0 38.0 36-37 33.01035779731748 38.0 33.0 38.0 11.0 38.0 38-39 32.95293467715857 38.0 33.0 38.0 11.0 38.0 40-41 32.92187475938958 37.5 33.0 38.0 11.0 38.0 42-43 33.34556468378016 38.0 34.0 38.0 16.0 38.0 44-45 33.392270053434764 38.0 34.0 38.0 21.0 38.0 46-47 33.28237461309845 38.0 34.0 38.0 15.5 38.0 48-49 32.98938426831334 37.5 33.0 38.0 15.0 38.0 50-51 32.34824219652289 37.5 30.5 38.0 11.0 38.0 52-53 32.900121652627845 37.0 33.5 38.0 11.0 38.0 54-55 33.0628493663284 37.5 33.5 38.0 15.0 38.0 56-57 33.10577234019618 38.0 34.0 38.0 11.0 38.0 58-59 33.39813709789187 38.0 34.0 38.0 16.0 38.0 60-61 33.24259689862794 38.0 34.0 38.0 11.0 38.0 62-63 33.26512188361386 38.0 34.0 38.0 11.0 38.0 64-65 33.28763146953295 38.0 34.0 38.0 14.5 38.0 66-67 33.11576055991007 38.0 34.0 38.0 11.0 38.0 68-69 32.49799042178044 37.0 31.5 38.0 11.0 38.0 70-71 32.517312400868505 37.0 31.5 38.0 11.0 38.0 72-73 32.721049754384886 37.0 32.0 38.0 11.0 38.0 74-75 32.90099554966969 37.0 32.5 38.0 11.0 38.0 76 31.765976531822172 37.0 29.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 59.0 13 629.0 14 2040.0 15 3272.0 16 4298.0 17 5003.0 18 5138.0 19 4888.0 20 3996.0 21 3257.0 22 2855.0 23 2694.0 24 2764.0 25 2969.0 26 3190.0 27 3797.0 28 4491.0 29 5233.0 30 6293.0 31 7359.0 32 9641.0 33 12222.0 34 16734.0 35 24092.0 36 41761.0 37 81078.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.72119667530308 17.921640943511722 9.659561198523212 32.69760118266199 2 22.512665732456615 20.495387979488445 30.470133509909296 26.52181277814564 3 18.925068140870664 21.91749179999692 30.12750427324104 29.029935785891375 4 15.411386070004157 20.302514667611142 30.525185173778468 33.76091408860623 5 15.345940036033817 31.68434992839434 34.27639785029027 18.69331218528157 6 30.93794393818648 35.79224559093587 16.644144924523292 16.625665546354366 7 27.840596281709228 29.973088783913333 18.64458329964619 23.541731634731253 8 24.535514918190568 35.59884504331088 19.13339749759384 20.732242540904718 9 24.537890834048813 17.181875233412775 19.327540204748722 38.952693727789686 10-11 24.044365907087226 25.701927630135245 24.286907745554362 25.966798717223167 12-13 24.403093672523447 22.41950137821648 25.4694790495696 27.707925899690476 14-15 24.86852945479184 24.363436174226383 22.209475118766218 28.55855925221556 16-17 25.663946780312873 25.559617098518405 22.72558406335237 26.050852057816353 18-19 22.78067269433852 25.471373050262468 25.13335117123811 26.614603084160905 20-21 24.624840234681777 24.95976993794176 24.542840203883646 25.87254962349282 22-23 25.642925890279116 24.8614051973051 23.512608277189607 25.98306063522618 24-25 23.048730016650786 27.30324642200599 23.368078614808613 26.279944946534616 26-27 24.08605834751342 27.278309477428643 23.906080368348515 24.729551806709424 28-29 22.91276451983622 26.7544982569074 25.106500936515243 25.226236286741138 30-31 23.44371982722114 26.169183150211357 25.03946041254418 25.34763661002333 32-33 22.41353423982507 26.91102419193397 25.042154945410307 25.63328662283066 34-35 22.474860249164575 27.210989112524448 25.049278531499763 25.264872106811215 36-37 24.319906664048332 25.563038347060342 24.864943956073578 25.252111032817755 38-39 24.267321700830085 24.700460474643094 26.061286248902714 24.970931575624107 40-41 22.785168303147778 26.213982818391983 25.380503513894855 25.620345364565388 42-43 21.418341969709804 25.658700154761817 26.388621541920433 26.53433633360795 44-45 21.368580926952937 24.162683570522457 27.798578212736796 26.67015728978781 46-47 21.746738172144433 24.821460883090086 27.130823455131342 26.300977489634143 48-49 21.61117516732145 25.002261750999498 27.241491485229325 26.145071596449725 50-51 23.30846317021432 25.116169840884854 25.976038406307627 25.599328582593195 52-53 19.71989604389258 26.29646741746078 26.986620463952253 26.99701607469439 54-55 20.414543480478876 25.511152863630326 26.570131077670595 27.5041725782202 56-57 20.52745670303945 25.84919027560662 26.29544351950962 27.32790950184431 58-59 20.188548117887812 25.941441120584933 26.601378784582717 27.268631976944533 60-61 19.842623683075598 25.430310824964575 26.62536196167827 28.101703530281558 62-63 20.67243553339558 25.634751807182525 26.112945298437783 27.579867360984107 64-65 20.973825315992645 25.357772023219322 25.350840882180233 28.317561778607804 66-67 20.53880156792681 26.96241134205602 24.219117001532503 28.27967008848467 68-69 20.753979711651365 27.6720371118939 23.758734191834613 27.815248984620123 70-71 20.79093761429039 28.006198148255084 24.197994263825528 27.004869973629 72-73 21.162212315107837 27.168079585441163 24.74513563250252 26.924572466948483 74-75 21.09552016417017 27.37895626428163 24.110375947376223 27.415147624171976 76 21.401650041770772 27.16024192399644 24.043410804963212 27.39469722926957 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.5 4 1.0 5 0.5 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 4.0 12 8.0 13 6.5 14 7.5 15 11.5 16 26.5 17 40.0 18 46.0 19 75.5 20 114.5 21 130.0 22 182.5 23 289.0 24 477.5 25 612.0 26 780.5 27 1099.0 28 1413.5 29 1578.0 30 1927.0 31 2584.0 32 3412.5 33 3933.0 34 4313.0 35 5225.0 36 6214.0 37 6671.0 38 7415.5 39 8930.5 40 10334.0 41 11393.0 42 11819.0 43 12374.5 44 13279.0 45 13905.0 46 14182.0 47 14235.5 48 14075.5 49 13640.0 50 13418.0 51 13068.5 52 12066.0 53 10980.0 54 10547.0 55 10202.0 56 9241.5 57 7950.0 58 7274.0 59 6816.0 60 5862.0 61 5108.0 62 4850.0 63 4500.0 64 3875.5 65 3339.5 66 2804.5 67 2531.0 68 2424.5 69 2141.5 70 1855.5 71 1746.0 72 1585.5 73 1345.5 74 1230.0 75 1194.0 76 1119.0 77 909.0 78 751.5 79 729.0 80 655.5 81 526.5 82 412.5 83 354.0 84 314.5 85 255.0 86 192.5 87 150.0 88 131.0 89 83.0 90 54.0 91 44.5 92 35.0 93 31.0 94 22.0 95 16.5 96 16.0 97 12.5 98 8.5 99 15.5 100 23.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0011549300112413188 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0026948366928964103 7 0.005004696715379048 8 0.0023098600224826377 9 0.008854463419516777 10-11 0.0026948366928964103 12-13 0.0 14-15 7.69953340827546E-4 16-17 9.624416760344324E-4 18-19 0.003657278368930843 20-21 0.0 22-23 0.0023098600224826377 24-25 0.00327230169851707 26-27 7.69953340827546E-4 28-29 0.006352115061827254 30-31 7.69953340827546E-4 32-33 0.0 34-35 0.003079813363310184 36-37 0.018863856850274873 38-39 0.00923944008993055 40-41 5.774650056206594E-4 42-43 7.69953340827546E-4 44-45 0.004812208380172161 46-47 0.0034647900337239565 48-49 5.774650056206594E-4 50-51 0.0026948366928964103 52-53 0.01193427678282696 54-55 0.009431928425137437 56-57 0.014629113475723371 58-59 0.013281695129275167 60-61 0.023098600224826377 62-63 0.010971835106792529 64-65 0.022521135219205717 66-67 0.019248833520688645 68-69 3.84976670413773E-4 70-71 3.84976670413773E-4 72-73 0.0038497667041377296 74-75 0.00981690509555121 76 0.0019248833520688648 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 259756.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 66.63025342695086 #Duplication Level Percentage of deduplicated Percentage of total 1 76.77474074688726 51.155204327535486 2 10.782003467714926 14.36815247008217 3 6.049294328439318 12.091980424743848 4 3.184139842938711 8.486401787274312 5 1.5293994694475121 5.095213712016595 6 0.7482757626315713 2.991468221843191 7 0.3606075390699865 1.6819160201131598 8 0.18662036633048745 0.9947649842584628 9 0.11765744952007393 0.7055591111182082 >10 0.267261027020151 2.429338941014521 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0015399066816550917 0.0 2 0.0 0.0015399066816550917 0.0 0.0015399066816550917 0.0 3 0.0 0.0015399066816550917 0.0 0.0015399066816550917 0.0 4 0.0 0.0015399066816550917 0.0 0.0026948366928964103 0.0 5 0.0 0.0015399066816550917 0.0 0.0026948366928964103 0.0 6 0.0 0.0015399066816550917 0.0 0.0026948366928964103 0.0 7 0.0 0.0015399066816550917 0.0 0.0030798133633101834 0.0 8 0.0 0.0015399066816550917 0.0 0.0030798133633101834 0.0 9 0.0 0.0015399066816550917 0.0 0.008084510078689232 0.0 10 0.0 0.0015399066816550917 0.0 0.008084510078689232 0.0 11 0.0 0.0015399066816550917 0.0 0.008084510078689232 0.0 12 0.0 0.0015399066816550917 0.0 0.008469486749103004 0.0 13 0.0 0.0015399066816550917 0.0 0.009624416760344322 0.0 14 0.0 0.0015399066816550917 0.0 0.012704230123654507 0.0 15 0.0 0.0015399066816550917 0.0 0.013859160134895826 0.0 16 0.0 0.0015399066816550917 0.0 0.014244136805309598 0.0 17 0.0 0.0015399066816550917 0.0 0.015014090146137145 0.0 18 0.0 0.0015399066816550917 0.0 0.01578404348696469 0.0 19 0.0 0.0015399066816550917 0.0 0.020403763531929964 0.0 20 0.0 0.0015399066816550917 0.0 0.021558693543171283 0.0 21 0.0 0.0015399066816550917 0.0 0.02386855356565392 0.0 22 0.0 0.0015399066816550917 0.0 0.033877946996412014 0.0 23 0.0 0.0015399066816550917 0.0 0.034647900337239565 0.0 24 0.0 0.0015399066816550917 0.0 0.045042270438411434 0.0 25 0.0 0.0015399066816550917 0.0 0.04735213046089407 0.0 26 0.0 0.0015399066816550917 0.0 0.05081692049461803 0.0 27 0.0 0.0015399066816550917 0.0 0.08854463419516777 0.0 28 0.0 0.0015399066816550917 0.0 0.1266573245661313 0.0 29 0.0 0.0015399066816550917 0.0 0.1620751782441984 0.0 30 0.0 0.0015399066816550917 0.0 0.2063474953417823 0.0 31 0.0 0.0015399066816550917 0.0 0.24523013905357335 0.0 32 0.0 0.0015399066816550917 0.0 0.3141409630576387 0.0 33 0.0 0.0015399066816550917 0.0 0.36226304685936034 0.0 34 0.0 0.0015399066816550917 0.0 0.4477278676912179 0.0 35 0.0 0.0015399066816550917 0.0 0.5547513820662467 0.0 36 0.0 0.0015399066816550917 0.0 0.696807773448929 0.0 37 0.0 0.0015399066816550917 0.0 1.0556060302745653 0.0 38 0.0 0.0015399066816550917 0.0 1.5572306318237115 0.0 39 0.0 0.0015399066816550917 0.0 2.0815688569272703 0.0 40 0.0 0.0015399066816550917 0.0 2.687137159488135 0.0 41 0.0 0.0015399066816550917 0.0 3.4528557569411293 0.0 42 0.0 0.0015399066816550917 0.0 4.359475815765564 0.0 43 0.0 0.0015399066816550917 0.0 5.231062997582346 0.0 44 0.0 0.0015399066816550917 0.0 6.06607739570982 0.0 45 0.0 0.0015399066816550917 0.0 6.854124640046813 0.0 46 0.0 0.0015399066816550917 0.0 7.631777514282635 0.0 47 0.0 0.0015399066816550917 0.0 8.317420964289564 0.0 48 0.0 0.0015399066816550917 0.0 9.008069111011872 0.0 49 0.0 0.0015399066816550917 0.0 9.64443554720584 0.0 50 0.0 0.0015399066816550917 0.0 10.314294953725804 0.0 51 0.0 0.0015399066816550917 0.0 11.008022913811423 0.0 52 0.0 0.0015399066816550917 0.0 11.901938742512204 0.0 53 0.0 0.0015399066816550917 0.0 12.764286484239054 0.0 54 0.0 0.0015399066816550917 0.0 13.575047352130461 0.0 55 0.0 0.0015399066816550917 0.0 14.257995965444493 0.0 56 0.0 0.0015399066816550917 0.0 14.905141748410045 0.0 57 0.0 0.0015399066816550917 0.0 15.49839079751767 0.0 58 0.0 0.0015399066816550917 0.0 16.108193843453087 0.0 59 0.0 0.0015399066816550917 0.0 16.63715178860161 0.0 60 0.0 0.0015399066816550917 0.0 17.19960270407613 0.0 61 0.0 0.0015399066816550917 0.0 17.72163106915721 0.0 62 0.0 0.0015399066816550917 0.0 18.27599747455304 0.0 63 0.0 0.0015399066816550917 0.0 18.861931966922803 0.0 64 0.0 0.0015399066816550917 0.0 19.494833613083046 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACGTGT 20 0.006944196 52.503468 33 CGACTGG 20 0.0069494857 52.493362 30 ACGTGTA 35 2.0821592E-5 50.003304 34 ACGAATA 30 5.8746175E-4 46.660763 24 GTAGATC 130 0.0 45.77225 38 TGGTCGC 95 0.0 44.213448 49 GCCGTAT 40 4.583153E-5 43.752888 54 CGACGAG 85 5.638867E-11 41.17126 22 GTGTCGC 35 0.0012535679 40.002644 36 GTGTCGA 35 0.0012535679 40.002644 36 GTCGCTT 45 9.1786664E-5 38.891457 48 CGACGAA 135 0.0 38.88397 22 TTACGCT 45 9.189085E-5 38.88397 13 GTGGTCG 110 0.0 38.184338 48 TCGGTGG 115 1.8189894E-12 36.517117 45 TACCACG 40 0.0024174983 34.995575 5 AGCGATC 40 0.0024174983 34.995575 27 TTGCCGA 40 0.0024174983 34.995575 18 GACGATC 40 0.0024174983 34.995575 23 GACGACC 70 8.674069E-7 34.995575 23 >>END_MODULE