SRR1779846_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779846_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	259756
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	22214	8.551871756571552	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	2830	1.0894839772709775	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	1664	0.6406011795685181	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	616	0.23714562897488414	RNA PCR Primer, Index 42 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	510	0.1963381019110242	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT	408	0.15707048152881936	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT	324	0.12473244121406243	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACCGAT	15	0.0022251194	69.982864	21
TACGGTC	20	7.92669E-5	69.982864	10
TCTCGTA	3175	0.0	53.56169	38
ATCTCGT	3210	0.0	53.086693	37
CCGTCTT	3320	0.0	52.83385	47
GATCTCG	3215	0.0	52.786457	36
CGTATGC	3345	0.0	52.72252	41
TATGCCG	3345	0.0	52.72252	43
CTCGTAT	3335	0.0	52.565845	39
TCGTATG	3350	0.0	52.53938	40
CGTAGTG	20	0.0069263056	52.537716	54
TCGTTCT	20	0.006931586	52.527596	62
CGTCTTC	3320	0.0	52.51748	48
TCGCCAA	20	0.0069527375	52.487152	11
ATTACGC	20	0.0069527375	52.487152	8
TCGATAC	20	0.0069527375	52.487152	28
GAAGTCG	20	0.0069527375	52.487152	27
TTACGCT	20	0.0069527375	52.487152	9
GCCGTCT	3350	0.0	52.46522	46
GTATGCC	3365	0.0	52.40916	42