##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779846_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 259756 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.526270807989036 34.0 34.0 34.0 34.0 34.0 2 33.61020727143935 34.0 34.0 34.0 34.0 34.0 3 33.74375182863918 34.0 34.0 34.0 34.0 34.0 4 33.57473937079413 34.0 34.0 34.0 34.0 34.0 5 33.603912902878086 34.0 34.0 34.0 34.0 34.0 6 37.263936155468976 38.0 38.0 38.0 36.0 38.0 7 37.33890651226535 38.0 38.0 38.0 37.0 38.0 8 37.23198694159134 38.0 38.0 38.0 36.0 38.0 9 37.15042578419748 38.0 38.0 38.0 36.0 38.0 10-11 37.102140085310836 38.0 38.0 38.0 35.5 38.0 12-13 37.259052726404775 38.0 38.0 38.0 36.5 38.0 14-15 37.28181254715964 38.0 38.0 38.0 36.0 38.0 16-17 37.208387871694974 38.0 38.0 38.0 36.0 38.0 18-19 37.09345501162629 38.0 38.0 38.0 36.0 38.0 20-21 37.09342613837602 38.0 38.0 38.0 36.0 38.0 22-23 37.083768998598686 38.0 38.0 38.0 36.0 38.0 24-25 37.264194089838156 38.0 38.0 38.0 36.0 38.0 26-27 37.178885184557814 38.0 38.0 38.0 36.0 38.0 28-29 36.67109710651535 38.0 37.0 38.0 34.0 38.0 30-31 36.93540476447127 38.0 37.0 38.0 35.5 38.0 32-33 36.97701496789294 38.0 38.0 38.0 36.0 38.0 34-35 37.03846301914104 38.0 38.0 38.0 36.0 38.0 36-37 37.06714378108687 38.0 38.0 38.0 36.0 38.0 38-39 36.49542840203884 38.0 37.0 38.0 34.0 38.0 40-41 36.80762523291089 38.0 37.0 38.0 35.0 38.0 42-43 37.16043325274488 38.0 38.0 38.0 36.0 38.0 44-45 36.92324720121961 38.0 38.0 38.0 35.5 38.0 46-47 37.081056837955614 38.0 38.0 38.0 36.0 38.0 48-49 36.73515914935555 38.0 37.0 38.0 34.5 38.0 50-51 36.90174817906035 38.0 37.5 38.0 35.5 38.0 52-53 36.83149763624324 38.0 37.5 38.0 35.0 38.0 54-55 36.8244313894578 38.0 37.5 38.0 35.0 38.0 56-57 36.70835322379463 38.0 37.0 38.0 34.5 38.0 58-59 36.79575640216203 38.0 37.0 38.0 35.0 38.0 60-61 36.49521473998676 38.0 37.0 38.0 34.0 38.0 62-63 36.298158656585414 38.0 37.0 38.0 34.0 38.0 64-65 36.645602026517196 38.0 37.0 38.0 34.0 38.0 66-67 36.43017293152035 38.0 37.0 38.0 34.0 38.0 68-69 36.51848657971327 38.0 37.0 38.0 34.0 38.0 70-71 35.82263547329032 38.0 37.0 38.0 31.0 38.0 72-73 34.61732933984201 38.0 36.5 38.0 23.0 38.0 74-75 34.44438434530868 38.0 36.5 38.0 23.0 38.0 76 34.14939404672077 38.0 36.0 38.0 23.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 3.0 22 12.0 23 40.0 24 63.0 25 150.0 26 242.0 27 507.0 28 838.0 29 1345.0 30 2227.0 31 3578.0 32 5657.0 33 8798.0 34 14907.0 35 28072.0 36 40509.0 37 152807.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.211940298507464 16.162542128069333 10.653442465093885 33.97207510832932 2 19.52678667672739 17.88409122407182 37.78353531775974 24.805586781441043 3 18.587443600917787 18.66520888834137 36.17356288208934 26.573784628651502 4 13.332512049769784 23.90551132601364 32.3903971419332 30.371579482283373 5 13.282080105945578 30.968293321424724 40.30744236899244 15.442184203637261 6 28.542940297817953 40.47336731394078 16.91471996796994 14.068972420271331 7 26.826714301113352 27.367606523044703 18.747978872480328 27.057700303361614 8 23.883567655800057 40.111874220422244 16.778053249973052 19.226504873804647 9 22.635088313648193 16.235621121360044 17.79516161320624 43.33412895178552 10-11 23.342290457198295 27.48021219914073 27.37338117310091 21.804116170560064 12-13 23.589445479603935 20.190486456520734 28.23476647315173 27.985301590723605 14-15 21.164669921002787 20.554674386732163 21.29498452393785 36.9856711683272 16-17 26.823826976085247 28.044972974637737 21.53290010625356 23.598299943023456 18-19 26.76261568548946 24.073553642649255 22.77560479834922 26.388225873512066 20-21 21.69247293614007 22.731524969586843 22.293998983661588 33.2820031106115 22-23 21.407205223363466 28.248818121621827 22.29265156531514 28.051325089699564 24-25 26.89334442083218 28.149350149373248 22.32206104284086 22.63524438695371 26-27 26.779554658987664 28.859391120898074 22.805248001971083 21.555806218143182 28-29 21.245130045119264 28.802992038682458 22.89437010117187 27.057507815026412 30-31 20.56352885015168 23.86547375229061 28.59664454334067 26.97435285421703 32-33 20.682486641309534 28.307334575524724 23.450661389919773 27.55951739324597 34-35 21.058993824974205 23.04316358428679 28.746400468131633 27.15144212260737 36-37 26.4507845824543 27.476169944101386 23.405426631146153 22.667618842298157 38-39 21.44628035541046 23.822933830209887 28.586057684904294 26.144728129475354 40-41 20.719636890004466 22.00160920248233 29.617602673278 27.661151234235206 42-43 26.02254812698865 21.825716876062298 29.19861177145431 22.953123225494746 44-45 20.675172084571674 26.869831688199696 30.49169220345247 21.96330402377616 46-47 25.245615115723986 21.759458876792067 26.068695237068635 26.92623077041531 48-49 24.696060918708326 21.434346078627637 25.2712160643065 28.598376938357532 50-51 20.163293122899155 22.017041626077617 30.383263321230412 27.436401929792815 52-53 18.575293404064812 22.05204732975825 36.01682921428365 23.355830051893285 54-55 18.37173336517554 22.165064605654177 31.445591234662295 28.01761079450799 56-57 23.632574765419164 22.077561900066254 25.867640941096713 28.42222239341787 58-59 18.543588361031407 21.955747270311388 35.11621637235456 24.384447996302644 60-61 23.78123573847958 27.22730047350655 25.765380297583174 23.2260834904307 62-63 18.488509786177083 34.29311357356721 23.492023760241068 23.726352880014634 64-65 18.37290654714805 34.966318006534244 22.490600038119663 24.170175408198038 66-67 18.298213216306927 34.86702624428813 21.83673430089368 24.998026238511265 68-69 18.21968967774227 35.050051977053094 22.118931197782313 24.611327147422323 70-71 18.640364386810614 34.12487871740771 21.95291925274522 25.281837643036454 72-73 18.877507797758867 31.958103893103317 22.15391428241365 27.010474026724175 74-75 19.25738113939842 31.314204746723345 22.21387977637111 27.214534337507125 76 18.56486633219232 31.670972735078607 22.14730989445961 27.616851038269463 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 2.5 12 5.0 13 3.5 14 2.5 15 14.5 16 38.5 17 51.0 18 58.0 19 80.5 20 138.5 21 181.0 22 209.5 23 328.0 24 526.0 25 634.0 26 820.0 27 1187.5 28 1568.5 29 1768.0 30 2092.5 31 2673.0 32 3355.0 33 3781.0 34 4254.0 35 5183.5 36 6101.5 37 6563.0 38 7150.0 39 8460.5 40 12906.0 41 18710.5 42 20793.0 43 20003.5 44 17865.5 45 14944.0 46 13371.0 47 13029.0 48 12383.0 49 11546.0 50 11013.0 51 10932.0 52 9916.0 53 8648.5 54 8316.0 55 8256.0 56 7705.0 57 6746.0 58 6278.0 59 5892.5 60 5021.0 61 4241.0 62 3947.0 63 3724.0 64 3272.0 65 2834.0 66 2511.0 67 2397.0 68 2267.0 69 1971.5 70 1671.5 71 1537.0 72 1420.5 73 1230.5 74 1105.5 75 1054.0 76 1017.5 77 888.0 78 694.0 79 593.0 80 541.5 81 456.5 82 352.5 83 282.0 84 253.0 85 199.5 86 142.0 87 109.0 88 94.0 89 67.0 90 31.5 91 10.5 92 13.0 93 7.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05043194382420425 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.001539906681655092 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.924883352068865E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.015014090146137145 52-53 0.0340704353316189 54-55 0.05485917553396264 56-57 0.055436640539583304 58-59 0.0427324104159288 60-61 0.03753522536534286 62-63 0.030220668627481174 64-65 0.018286391844654214 66-67 0.0383051787061704 68-69 0.010009393430758096 70-71 0.012319253453240735 72-73 0.025408460247309014 74-75 0.015399066816550918 76 0.017323950168619782 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 259756.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.20582392707002 #Duplication Level Percentage of deduplicated Percentage of total 1 36.85093573816603 11.499638121929811 2 18.994806252236028 11.854971588721723 3 15.958746098520832 14.940174625417699 4 11.305345489088195 14.11170483068726 5 7.103467844409628 11.083478341212523 6 4.109352446983062 7.694143734889666 7 2.219371075389531 4.848011210520642 8 1.1460787821216645 2.8611466145151603 9 0.624236667119012 1.7531837570643218 >10 1.6543505347956429 7.557861993563191 >50 0.01480403163128092 0.310291196353501 >100 0.012336693026067432 0.7699533408275459 >500 0.0024673386052134864 0.43348373088590836 >1k 0.0024673386052134864 1.7300851568394955 >5k 0.0 0.0 >10k+ 0.0012336693026067432 8.551871756571552 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT 22214 8.551871756571552 No Hit TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 2830 1.0894839772709775 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 1664 0.6406011795685181 No Hit ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT 616 0.23714562897488414 RNA PCR Primer, Index 42 (95% over 22bp) TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 510 0.1963381019110242 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT 408 0.15707048152881936 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT 324 0.12473244121406243 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0023098600224826377 0.0 2 0.0 0.0 0.0 0.0023098600224826377 0.0 3 0.0 0.0 0.0 0.0023098600224826377 0.0 4 0.0 0.0 0.0 0.003849766704137729 0.0 5 0.0 0.0 0.0 0.003849766704137729 0.0 6 0.0 0.0 0.0 0.003849766704137729 0.0 7 0.0 0.0 0.0 0.004234743374551502 0.0 8 0.0 0.0 0.0 0.004234743374551502 0.0 9 0.0 0.0 0.0 0.01193427678282696 0.0 10 0.0 0.0 0.0 0.01193427678282696 0.0 11 0.0 0.0 0.0 0.01193427678282696 0.0 12 0.0 0.0 0.0 0.012319253453240734 0.0 13 0.0 0.0 0.0 0.013089206794068279 0.0 14 0.0 0.0 0.0 0.014629113475723371 0.0 15 0.0 0.0 0.0 0.017323950168619782 0.0 16 0.0 0.0 0.0 0.018093903509447326 0.0 17 0.0 0.0 0.0 0.018863856850274873 0.0 18 0.0 0.0 0.0 0.02078874020234374 0.0 19 0.0 0.0 0.0 0.025793436917722786 0.0 20 0.0 0.0 0.0 0.026948366928964105 0.0 21 0.0 0.0 0.0 0.028488273610619196 0.0 22 0.0 0.0 0.0 0.032723016985170696 0.0 23 0.0 0.0 0.0 0.03657278368930843 0.0 24 0.0 0.0 0.0 0.043117387086342565 0.0 25 0.0 0.0 0.0 0.045042270438411434 0.0 26 0.0 0.0 0.0 0.05081692049461803 0.0 27 0.0 0.0 0.0 0.09200942422889173 0.0 28 0.0 0.0 0.0 0.13050709127026902 0.0 29 0.0 0.0 0.0 0.1709296416637152 0.0 30 0.0 0.0 0.0 0.2163568887725404 0.0 31 0.0 0.0 0.0 0.2598592525292967 0.0 32 0.0 0.0 0.0 0.3314649132262585 0.0 33 0.0 0.0 0.0 0.3869015537658418 0.0 34 0.0 0.0 0.0 0.47968093133556106 0.0 35 0.0 0.0 0.0 0.5963288624709343 0.0 36 0.0 0.0 0.0 0.7533993439997536 0.0 37 0.0 0.0 0.0 1.1603196846271115 0.0 38 0.0 0.0 0.0 1.693512373150187 0.0 39 0.0 0.0 0.0 2.243259058501055 0.0 40 0.0 0.0 0.0 2.8934846548299173 0.0 41 0.0 0.0 0.0 3.6957760359722203 0.0 42 0.0 0.0 0.0 4.6651472920741 0.0 43 0.0 0.0 0.0 5.585626511033431 0.0 44 0.0 0.0 0.0 6.466453132940144 0.0 45 0.0 0.0 0.0 7.308012134464652 0.0 46 0.0 0.0 0.0 8.140716672569642 0.0 47 0.0 0.0 0.0 8.87294229969664 0.0 48 0.0 0.0 0.0 9.60362802014198 0.0 49 0.0 0.0 0.0 10.288501516808081 0.0 50 0.0 0.0 0.0 10.993778777006114 0.0 51 0.0 0.0 0.0 11.70868045396449 0.0 52 0.0 0.0 0.0 12.623769999538029 0.0 53 0.0 0.0 0.0 13.50652150479681 0.0 54 0.0 0.0 0.0 14.339995996242628 0.0 55 0.0 0.0 0.0 15.026409399590385 0.0 56 0.0 0.0 0.0 15.674710112567178 0.0 57 0.0 0.0 0.0 16.27604367175349 0.0 58 0.0 0.0 0.0 16.890466437733874 0.0 59 0.0 0.0 0.0 17.439828146414328 0.0 60 0.0 0.0 0.0 18.00035417853678 0.0 61 0.0 0.0 0.0 18.538551563775236 0.0 62 0.0 0.0 0.0 19.109856942669275 0.0 63 0.0 0.0 0.0 19.720814918615932 0.0 64 0.0 0.0 0.0 20.383744745068448 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACCGAT 15 0.0022251194 69.982864 21 TACGGTC 20 7.92669E-5 69.982864 10 TCTCGTA 3175 0.0 53.56169 38 ATCTCGT 3210 0.0 53.086693 37 CCGTCTT 3320 0.0 52.83385 47 GATCTCG 3215 0.0 52.786457 36 CGTATGC 3345 0.0 52.72252 41 TATGCCG 3345 0.0 52.72252 43 CTCGTAT 3335 0.0 52.565845 39 TCGTATG 3350 0.0 52.53938 40 CGTAGTG 20 0.0069263056 52.537716 54 TCGTTCT 20 0.006931586 52.527596 62 CGTCTTC 3320 0.0 52.51748 48 TCGCCAA 20 0.0069527375 52.487152 11 ATTACGC 20 0.0069527375 52.487152 8 TCGATAC 20 0.0069527375 52.487152 28 GAAGTCG 20 0.0069527375 52.487152 27 TTACGCT 20 0.0069527375 52.487152 9 GCCGTCT 3350 0.0 52.46522 46 GTATGCC 3365 0.0 52.40916 42 >>END_MODULE