##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779845_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 93226 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.867225881191942 24.0 12.0 34.0 12.0 34.0 2 25.168365048377062 31.0 12.0 34.0 12.0 34.0 3 24.946045094716066 31.0 11.0 34.0 11.0 34.0 4 25.688048398515434 31.0 12.0 34.0 12.0 34.0 5 25.299744706412373 32.0 11.0 34.0 11.0 34.0 6 27.353527985755047 33.0 12.0 38.0 11.0 38.0 7 27.82708686417952 34.0 12.0 38.0 12.0 38.0 8 27.073488082723703 32.0 11.0 38.0 11.0 38.0 9 28.008323858151158 34.0 12.0 38.0 11.0 38.0 10-11 26.876649218029307 31.0 11.5 37.5 11.0 38.0 12-13 27.25994357797181 32.0 11.0 38.0 11.0 38.0 14-15 26.383337266427823 29.0 11.0 37.0 11.0 38.0 16-17 26.641510951880377 29.5 11.0 37.5 11.0 38.0 18-19 26.92695707206144 31.0 11.0 38.0 11.0 38.0 20-21 26.422880955956494 29.0 11.0 37.5 11.0 38.0 22-23 26.887638641580676 32.5 11.0 38.0 11.0 38.0 24-25 27.149883079827518 32.0 11.0 38.0 11.0 38.0 26-27 26.32924827837728 29.5 11.0 38.0 11.0 38.0 28-29 26.85575912299144 31.0 11.0 38.0 11.0 38.0 30-31 26.993086692553582 32.5 11.0 38.0 11.0 38.0 32-33 27.148451075880118 34.0 11.0 38.0 11.0 38.0 34-35 27.196559972539852 34.0 11.0 38.0 11.0 38.0 36-37 26.858151159547766 32.0 11.0 38.0 11.0 38.0 38-39 26.78223886040375 32.0 11.0 38.0 11.0 38.0 40-41 26.780179349108618 31.0 11.0 38.0 11.0 38.0 42-43 27.035885911655548 32.5 11.0 38.0 11.0 38.0 44-45 27.12677793748525 33.0 11.0 38.0 11.0 38.0 46-47 27.000117992834618 32.5 11.0 38.0 11.0 38.0 48-49 26.6837738399159 31.0 11.0 38.0 11.0 38.0 50-51 26.28893227211293 29.0 11.0 38.0 11.0 38.0 52-53 26.788353034561172 31.0 11.0 38.0 11.0 38.0 54-55 26.794354579194646 31.0 11.0 38.0 11.0 38.0 56-57 26.84354150129792 31.5 11.0 38.0 11.0 38.0 58-59 26.810299701799927 31.5 11.0 38.0 11.0 38.0 60-61 26.925133546435546 31.5 11.0 38.0 11.0 38.0 62-63 26.781246647930836 31.0 11.0 38.0 11.0 38.0 64-65 26.775995966790383 31.0 11.0 38.0 11.0 38.0 66-67 26.882682942526763 31.0 11.0 38.0 11.0 38.0 68-69 26.609513440456524 31.0 11.0 38.0 11.0 38.0 70-71 26.606863964988307 31.0 11.0 38.0 11.0 38.0 72-73 26.501780619140582 31.0 11.0 38.0 11.0 38.0 74-75 26.670252933730936 31.0 11.0 38.0 11.0 38.0 76 25.831817304185527 27.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 58.0 13 758.0 14 2667.0 15 4488.0 16 5847.0 17 6750.0 18 6933.0 19 6146.0 20 4801.0 21 3374.0 22 2309.0 23 1647.0 24 1275.0 25 1064.0 26 991.0 27 932.0 28 996.0 29 1057.0 30 1235.0 31 1495.0 32 1888.0 33 2365.0 34 3130.0 35 4816.0 36 8531.0 37 17671.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.32257095660009 20.815008688563278 15.530002359856693 35.33241799497994 2 13.823396906442408 30.4657498980971 31.391457318773732 24.319395876686762 3 12.815094501533908 30.479694505824558 32.1369575011263 24.568253491515243 4 10.428421255872825 31.503014180593397 24.53392830326304 33.53463626027074 5 11.220045909939287 33.830691008946005 34.86366464291078 20.085598438203935 6 18.942083865223502 41.46276053678892 19.733750978856694 19.86140461913088 7 18.01847223265144 34.77971701655206 17.327640767638194 29.8741699831583 8 16.386514057689627 41.29131222981453 20.13344346352295 22.18873024897289 9 18.80323542663434 20.668754961488126 17.884957840760368 42.64305177111717 10-11 17.488522268943623 32.59139277439286 23.48536857461598 26.43471638204754 12-13 17.37069057988115 25.384013043571535 25.482161628730182 31.763134747817134 14-15 25.325152452923287 28.042756541933265 19.41475240143523 27.217338603708214 16-17 26.257837179741593 26.366712970163743 19.173402127100417 28.202047722994244 18-19 18.782079818073573 26.680754522684484 23.631663350299544 30.90550230894239 20-21 25.443545791946455 25.392594340634588 20.66322699676056 28.5006328706584 22-23 26.135041057244152 25.137438521402867 19.376015704194756 29.351504717158228 24-25 18.631131802237647 31.61237033779218 19.33428445769821 30.422213402271968 26-27 23.773257030072568 30.993462019104417 20.262377379336975 24.970903571486037 28-29 19.564354523804415 30.468900856057846 23.283056920337273 26.68368769980047 30-31 21.187872416881646 28.160750009385843 23.47480034968973 27.17657722404278 32-33 18.46705032421387 30.13553158738757 23.121356281274974 28.276061807123586 34-35 18.705884876960376 31.818669412799554 22.57299779022119 26.90244792001888 36-37 23.164935845170152 25.99826202634854 23.52969574732867 27.30710638115264 38-39 23.59210646298094 24.234703455970305 25.69315188997538 26.480038191073373 40-41 20.03689977527608 29.557363596869955 23.423312291164972 26.982424336688997 42-43 16.529723467702144 28.86212000943943 25.1726986033939 29.435457919464525 44-45 16.13593576520186 25.271265440541512 27.97828803750248 30.61451075675415 46-47 18.652485692985138 27.45391451726228 25.326768465032956 28.566831324719626 48-49 19.720356981957824 27.62319524596143 24.588097740973545 28.068350031107205 50-51 25.118801154221597 27.059845746221427 20.617766001952308 27.20358709760467 52-53 14.970525604372616 30.32295784544582 24.171149957357336 30.535366592824232 54-55 17.581368405243623 27.1626724452359 23.31148490634856 31.94447424317192 56-57 18.941490731204944 28.654415550978374 21.55102128389976 30.85307243391692 58-59 17.971356541329186 29.15410609880384 22.627259561229415 30.247277798637555 60-61 15.644747712081712 27.0038730996599 23.87803491154098 33.47334427671741 62-63 17.451122375090513 28.249523962775232 22.65078981950814 31.648563842626114 64-65 17.959790153522654 27.022025297443435 22.652369355548167 32.365815193485744 66-67 16.23001823838644 33.24214140113722 19.483960948396096 31.04387941208025 68-69 16.93420791521633 35.47634499144547 18.268606765316356 29.32084032802184 70-71 16.08349602042349 35.28843884753181 19.81904189818291 28.809023233861797 72-73 17.40744117694383 32.952174589297876 21.51580324914588 28.124580984612415 74-75 16.628942287062863 33.037974683544306 19.692662518772796 30.640420510620036 76 18.209707696433362 33.22499329578976 19.03781174577635 29.527487262000534 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 0.5 12 0.0 13 1.5 14 2.5 15 5.5 16 13.0 17 17.0 18 19.5 19 18.5 20 26.0 21 37.0 22 38.5 23 56.5 24 99.0 25 125.0 26 156.5 27 244.5 28 399.0 29 497.0 30 564.0 31 688.5 32 942.0 33 1138.0 34 1260.5 35 1652.0 36 2190.0 37 2459.0 38 2713.5 39 3261.5 40 3871.0 41 4544.0 42 4901.0 43 5161.5 44 5597.0 45 5889.0 46 6006.0 47 6133.5 48 6225.0 49 5975.0 50 5761.0 51 5391.5 52 4697.5 53 4115.0 54 3857.0 55 3568.0 56 3059.5 57 2588.5 58 2337.0 59 2186.5 60 1873.0 61 1546.0 62 1382.0 63 1199.0 64 965.0 65 804.5 66 666.5 67 638.0 68 568.0 69 445.5 70 353.5 71 314.0 72 276.5 73 233.5 74 196.5 75 165.0 76 158.5 77 127.0 78 104.0 79 106.0 80 94.5 81 65.5 82 43.5 83 39.0 84 31.5 85 23.5 86 17.5 87 12.0 88 11.0 89 10.0 90 9.0 91 7.0 92 6.0 93 6.5 94 7.5 95 7.0 96 6.0 97 5.5 98 6.0 99 5.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.005363310664406925 7 0.005363310664406925 8 0.0032179863986441554 9 0.00858129706305108 10-11 0.00214532426576277 12-13 0.0 14-15 5.363310664406925E-4 16-17 5.363310664406925E-4 18-19 0.0016089931993220777 20-21 0.0 22-23 0.0026816553322034625 24-25 0.0032179863986441554 26-27 0.0016089931993220777 28-29 0.00858129706305108 30-31 5.363310664406925E-4 32-33 5.363310664406925E-4 34-35 0.00429064853152554 36-37 0.01501726986033939 38-39 0.011262952395254542 40-41 5.363310664406925E-4 42-43 0.0 44-45 0.005899641730847617 46-47 0.0026816553322034625 48-49 0.0 50-51 0.0032179863986441554 52-53 0.010190290262373157 54-55 0.00858129706305108 56-57 0.01072662132881385 58-59 0.011799283461695235 60-61 0.020380580524746315 62-63 0.009117628129491772 64-65 0.016089931993220775 66-67 0.01716259412610216 68-69 5.363310664406925E-4 70-71 0.0 72-73 0.0016089931993220777 74-75 0.006435972797288311 76 0.001072662132881385 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 93226.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.28260356552893 #Duplication Level Percentage of deduplicated Percentage of total 1 89.92721073709275 71.29663398622702 2 3.8085831799978354 6.039087808122198 3 2.4136811343218967 5.740887735181173 4 1.553198398095032 4.92566451419132 5 0.951131074791644 3.7704073970780683 6 0.5371252300032471 2.555081200523459 7 0.3355341487173937 1.8621414626820845 8 0.18535555796081826 1.1756376976379979 9 0.09741313995021106 0.6950850621071375 >10 0.18941443879207706 1.8642867869478472 >50 0.0013529602770862648 0.07508634930169696 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03861583678372986 0.0 2 0.0 0.0 0.0 0.04397914744813679 0.0 3 0.0 0.0 0.0 0.04397914744813679 0.0 4 0.0 0.0 0.0 0.05363310664406925 0.0 5 0.0 0.0 0.0 0.06221440370712033 0.0 6 0.0 0.0 0.0 0.06865037650440864 0.0 7 0.0 0.0 0.0 0.06865037650440864 0.0 8 0.0 0.0 0.0 0.06865037650440864 0.0 9 0.0 0.0 0.0 0.06865037650440864 0.0 10 0.0 0.0 0.0 0.06865037650440864 0.0 11 0.0 0.0 0.0 0.06972303863729003 0.0 12 0.0 0.0 0.0 0.06972303863729003 0.0 13 0.0 0.0 0.0 0.07079570077017142 0.0 14 0.0 0.0 0.0 0.08044965996610387 0.0 15 0.0 0.0 0.0 0.08044965996610387 0.0 16 0.0 0.0 0.0 0.08044965996610387 0.0 17 0.0 0.0 0.0 0.0858129706305108 0.0 18 0.0 0.0 0.0 0.08688563276339219 0.0 19 0.0 0.0 0.0 0.08688563276339219 0.0 20 0.0 0.0 0.0 0.08903095702915495 0.0 21 0.0 0.0 0.0 0.09439426769356188 0.0 22 0.0 0.0 0.0 0.14051873940746143 0.0 23 0.0 0.0 0.0 0.14159140154034283 0.0 24 0.0 0.0 0.0 0.16304464419797052 0.0 25 0.0 0.0 0.0 0.1651899684637333 0.0 26 0.0 0.0 0.0 0.16626263059661467 0.0 27 0.0 0.0 0.0 0.17698925192542853 0.0 28 0.0 0.0 0.0 0.19736983245017484 0.0 29 0.0 0.0 0.0 0.21667775084203977 0.0 30 0.0 0.0 0.0 0.25422092549288827 0.0 31 0.0 0.0 0.0 0.2735288438847532 0.0 32 0.0 0.0 0.0 0.3078540321369575 0.0 33 0.0 0.0 0.0 0.3421792203891618 0.0 34 0.0 0.0 0.0 0.36899577371119646 0.0 35 0.0 0.0 0.0 0.4515907579430631 0.0 36 0.0 0.0 0.0 0.5620749576298457 0.0 37 0.0 0.0 0.0 0.7841160191362925 0.0 38 0.0 0.0 0.0 1.0201016883701972 0.0 39 0.0 0.0 0.0 1.3719348679552914 0.0 40 0.0 0.0 0.0 1.7731105056529295 0.0 41 0.0 0.0 0.0 2.185012764679381 0.0 42 0.0 0.0 0.0 2.6344581983566817 0.0 43 0.0 0.0 0.0 3.0635230515092355 0.0 44 0.0 0.0 0.0 3.5172591337180616 0.0 45 0.0 0.0 0.0 4.0160470255079055 0.0 46 0.0 0.0 0.0 4.497672323171647 0.0 47 0.0 0.0 0.0 4.993242228562847 0.0 48 0.0 0.0 0.0 5.458777594233369 0.0 49 0.0 0.0 0.0 5.755905005041512 0.0 50 0.0 0.0 0.0 6.134554737948641 0.0 51 0.0 0.0 0.0 6.610816724947976 0.0 52 0.0 0.0 0.0 6.9626499045330705 0.0 53 0.0 0.0 0.0 7.377770149958166 0.0 54 0.0 0.0 0.0 7.776800463390042 0.0 55 0.0 0.0 0.0 8.121125008044967 0.0 56 0.0 0.0 0.0 8.524445970008367 0.0 57 0.0 0.0 0.0 8.947074850363633 0.0 58 0.0 0.0 0.0 9.338596528865338 0.0 59 0.0 0.0 0.0 9.745135477227382 0.0 60 0.0 0.0 0.0 10.058352820028748 0.0 61 0.0 0.0 0.0 10.369424838564349 0.0 62 0.0 0.0 0.0 10.629009074721644 0.0 63 0.0 0.0 0.0 11.00551348336301 0.0 64 0.0 0.0 0.0 11.325166798961662 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCCGT 15 0.002218478 70.0 50 TGCCGCT 55 0.0 63.636368 13 GTTATAC 40 1.053013E-8 61.25 1 GGGTTTA 35 2.9461808E-7 60.0 37 TCGGTGG 105 0.0 59.999996 45 TCTCGGT 160 0.0 56.875 43 TTGTCAT 25 2.3796153E-4 55.999996 2 CTCGGTC 25 2.3796153E-4 55.999996 44 TGTGTCG 25 2.3796153E-4 55.999996 35 TGGTAGC 25 2.3796153E-4 55.999996 49 ATCTCGG 195 0.0 55.64102 42 CTCGGTG 130 0.0 53.846157 44 GATCTCG 170 0.0 53.529408 41 TGATCGG 20 0.0069321105 52.5 31 TAGAGAG 60 8.185452E-11 52.5 29 TCGCACG 20 0.0069321105 52.5 51 ACGTTGC 20 0.0069321105 52.5 15 GTTTATC 20 0.0069321105 52.5 39 AGGACCG 20 0.0069321105 52.5 24 TTTCCTA 20 0.0069321105 52.5 24 >>END_MODULE