##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779844_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 284905 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.24480791842895 34.0 27.0 34.0 12.0 34.0 2 30.219606535511836 34.0 31.0 34.0 12.0 34.0 3 29.74072059107422 34.0 31.0 34.0 11.0 34.0 4 29.879967006546043 34.0 31.0 34.0 12.0 34.0 5 30.617925273336727 34.0 32.0 34.0 21.0 34.0 6 33.112318141134764 37.0 34.0 38.0 21.0 38.0 7 33.38756778575315 37.0 34.0 38.0 21.0 38.0 8 32.597360523683335 37.0 31.0 38.0 11.0 38.0 9 33.51975570804303 38.0 34.0 38.0 21.0 38.0 10-11 32.082306382829366 37.0 30.0 38.0 16.5 38.0 12-13 33.05128376125375 37.0 34.0 38.0 16.0 38.0 14-15 31.803564346010074 37.0 29.0 38.0 11.0 38.0 16-17 32.47582176514979 37.0 30.5 38.0 16.0 38.0 18-19 33.40128463873923 37.5 34.0 38.0 21.0 38.0 20-21 32.018588652357806 37.0 30.0 38.0 16.0 38.0 22-23 32.9645355469367 37.5 32.5 38.0 16.0 38.0 24-25 33.27489338551447 37.5 34.0 38.0 21.0 38.0 26-27 32.161876765939525 37.0 30.5 38.0 11.0 38.0 28-29 33.44305294747372 37.5 34.0 38.0 21.0 38.0 30-31 33.90199013706323 38.0 35.0 38.0 21.0 38.0 32-33 33.98222916410734 38.0 35.0 38.0 21.0 38.0 34-35 33.907988627788214 38.0 34.5 38.0 21.0 38.0 36-37 33.380414524139624 38.0 34.0 38.0 16.0 38.0 38-39 33.32434671206192 38.0 34.0 38.0 16.0 38.0 40-41 33.30664782997842 38.0 34.0 38.0 16.0 38.0 42-43 33.72742668608835 38.0 34.5 38.0 21.0 38.0 44-45 33.79475965672768 38.0 34.0 38.0 21.0 38.0 46-47 33.67691160211298 38.0 34.0 38.0 21.0 38.0 48-49 33.37492848493358 38.0 34.0 38.0 16.0 38.0 50-51 32.72659833979748 37.5 32.5 38.0 15.0 38.0 52-53 33.31138098664467 37.0 34.0 38.0 21.0 38.0 54-55 33.47039539495621 37.5 34.0 38.0 21.0 38.0 56-57 33.5261034379881 38.0 34.0 38.0 21.0 38.0 58-59 33.81724083466419 38.0 34.5 38.0 21.0 38.0 60-61 33.67295414260894 38.0 34.0 38.0 21.0 38.0 62-63 33.69158140432776 38.0 34.0 38.0 21.0 38.0 64-65 33.70701812884997 38.0 34.5 38.0 21.0 38.0 66-67 33.54560467524263 38.0 34.0 38.0 21.0 38.0 68-69 32.86621154419895 37.0 32.5 38.0 11.0 38.0 70-71 32.88874712623506 37.0 32.5 38.0 15.0 38.0 72-73 33.116103613485194 37.0 33.0 38.0 19.0 38.0 74-75 33.28307857004967 37.5 33.5 38.0 20.0 38.0 76 32.112556817184675 37.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 35.0 13 399.0 14 1631.0 15 3111.0 16 4140.0 17 4881.0 18 5227.0 19 4752.0 20 3849.0 21 3341.0 22 2840.0 23 2714.0 24 2762.0 25 2949.0 26 3429.0 27 3909.0 28 4792.0 29 5566.0 30 6725.0 31 8358.0 32 10558.0 33 13579.0 34 18657.0 35 27457.0 36 47291.0 37 91952.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.557323018711635 18.734095464070226 10.01112659396356 31.697454923254583 2 20.95330022288131 20.68373668415788 32.406591670907844 25.956371422052964 3 18.638493532932028 20.86976360541233 32.592618592162296 27.899124269493342 4 13.33426931784279 22.18950176374581 31.74566960916797 32.73055930924343 5 15.785612748109019 32.8018111300258 33.88989312226883 17.522682999596356 6 27.89659348180909 36.91851383843171 16.83111321715018 18.353779462609033 7 27.006848329337597 30.403282705072538 19.659022700228512 22.930846265361353 8 23.80517802987757 37.62074581601707 17.516567449174435 21.05750870493092 9 24.21871434939958 18.009849657578727 19.310734582267106 38.46070141075459 10-11 23.763884525675294 26.217073337674123 24.407280589832375 25.611761546818208 12-13 23.970972780400484 22.79847668521086 25.775258419473158 27.455292114915498 14-15 24.414625328620616 24.70103859910215 22.634721291106096 28.249614781171132 16-17 25.15062117524004 26.004068044092122 23.40406488512777 25.44124589554007 18-19 22.60308712935581 25.766210061689936 25.515940223066597 26.114762585887657 20-21 24.04397957213808 25.18857162913954 25.339148137098334 25.42830066162405 22-23 25.333583714901977 25.21055744414239 24.02101099163386 25.434847849321773 24-25 22.54040962459854 27.55313361062848 24.124853016023447 25.78160374874954 26-27 23.63226338604096 27.43265298959302 24.64260016496727 24.29248345939875 28-29 22.620978215847742 26.71770462570993 26.21504742247776 24.446269735964563 30-31 23.193777553140706 26.228308482857383 25.976469266840763 24.60144469716115 32-33 22.205023446494256 27.357636256423216 25.447870159773117 24.98947013730941 34-35 22.37916140887241 27.728334523832505 25.47925635630032 24.41324771099477 36-37 23.965659781889414 25.764993128094773 25.484324508391097 24.78502258162472 38-39 23.850034049663364 25.398767191569725 26.530655227851923 24.220543530914988 40-41 22.457528957528957 26.239908739908742 26.101614601614603 25.2009477009477 42-43 21.184163649542036 25.801197957890707 26.718883543961685 26.29575484860557 44-45 20.923718461732868 24.1682813136206 28.625057916684217 26.282942307962315 46-47 21.196405693325612 24.868284806683164 27.800066691237124 26.1352428087541 48-49 21.02610362123249 25.38706156130332 28.26944609217874 25.31738872528545 50-51 22.430601990547444 25.4904851410951 26.795871483152656 25.2830413852048 52-53 19.282236521092003 26.458291647798475 27.592840268051155 26.666631563058367 54-55 19.595753232552465 25.66945911459567 27.260329512365928 27.47445814048593 56-57 19.818371380328365 26.239438053547797 26.90729357910885 27.034896987014996 58-59 19.7237980229162 25.81793417209616 27.344627611772637 27.113640193215012 60-61 19.451646482431027 25.48901204032517 27.494913713050913 27.56442776419289 62-63 20.029627237400526 25.876969737391747 26.626602029676384 27.466800995531344 64-65 20.677222300238732 25.327025698637833 25.60718297991855 28.388569021204884 66-67 20.052027108861985 26.751482790155574 24.647579528280524 28.548910572701917 68-69 20.61968568194382 27.19070559226402 24.244785496792762 27.944823228999393 70-71 20.827578460777072 27.355578292298972 24.872105818285842 26.944737428638117 72-73 21.216157872013312 26.99209165675052 24.889342866870955 26.90240760436521 74-75 20.868852487788782 27.266600323292316 24.6491962447544 27.215350944164502 76 21.46149013165977 26.848273610833235 24.578011309191613 27.11222494831538 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 1.5 8 3.0 9 1.5 10 1.0 11 2.0 12 2.0 13 4.0 14 11.0 15 16.0 16 27.0 17 38.0 18 43.0 19 66.5 20 120.0 21 155.0 22 212.0 23 338.0 24 471.0 25 535.0 26 726.0 27 1036.0 28 1404.0 29 1653.0 30 1925.5 31 2564.0 32 3452.5 33 3975.0 34 4457.0 35 5714.0 36 7175.5 37 7862.0 38 8607.5 39 10307.5 40 12119.5 41 13795.0 42 14613.0 43 15094.0 44 16214.5 45 17140.5 46 17427.0 47 17804.0 48 17702.0 49 16673.0 50 16123.0 51 15308.0 52 13726.5 53 11978.0 54 10996.0 55 10218.5 56 8712.5 57 7371.5 58 6759.0 59 6221.0 60 5221.5 61 4366.0 62 3972.0 63 3728.5 64 3203.5 65 2761.0 66 2388.5 67 2177.0 68 2032.5 69 1827.0 70 1656.5 71 1547.0 72 1485.0 73 1290.0 74 1048.0 75 939.0 76 883.5 77 779.0 78 699.5 79 669.0 80 619.0 81 519.5 82 407.5 83 345.0 84 313.5 85 252.0 86 191.5 87 161.0 88 136.5 89 91.0 90 62.5 91 50.0 92 45.0 93 40.0 94 26.5 95 17.5 96 17.0 97 16.5 98 11.0 99 10.0 100 14.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 7.019883820922764E-4 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0035099419104613816 7 0.006317895438830487 8 0.0031589477194152436 9 0.00772187220301504 10-11 0.0036854390059844508 12-13 0.0 14-15 7.019883820922764E-4 16-17 5.264912865692073E-4 18-19 0.004387427388076727 20-21 0.0 22-23 0.0022814622417998984 24-25 0.0035099419104613816 26-27 0.0 28-29 0.006668889629876626 30-31 3.509941910461382E-4 32-33 3.509941910461382E-4 34-35 0.0036854390059844508 36-37 0.01737421245678384 38-39 0.009476843158245731 40-41 0.0017549709552306908 42-43 0.0012284796686614836 44-45 0.004562924483599797 46-47 0.0035099419104613816 48-49 7.019883820922764E-4 50-51 0.002983450623892175 52-53 0.0119338024955687 54-55 0.010354328635861077 56-57 0.013337779259753251 58-59 0.014390761832891666 60-61 0.024745090468752746 62-63 0.011231814113476422 64-65 0.022814622417998982 66-67 0.018778189220968394 68-69 8.774854776153454E-4 70-71 5.264912865692073E-4 72-73 0.005615907056738211 74-75 0.008248363489584248 76 0.0014039767641845528 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 284905.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.62927424612755 #Duplication Level Percentage of deduplicated Percentage of total 1 77.27641478769934 48.39765774496328 2 10.084194971356396 12.631316248250005 3 5.521964766085299 10.375099371378296 4 2.9958981720386677 7.505237129203278 5 1.5074811863752866 4.720622632118778 6 0.7482542710150921 2.811757316714427 7 0.4459870565647259 1.9552291973070801 8 0.3006743151780125 1.5064811315240272 9 0.19521657552675217 1.1003645201449352 >10 0.9227505881598103 8.948148916095212 >50 0.0011633100006124676 0.048085792300669894 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002456959337322967 0.0 2 0.0 0.0 0.0 0.002456959337322967 0.0 3 0.0 0.0 0.0 0.002456959337322967 0.0 4 0.0 0.0 0.0 0.005966901247784349 0.0 5 0.0 0.0 0.0 0.006668889629876626 0.0 6 0.0 0.0 0.0 0.0073708780119689015 0.0 7 0.0 0.0 0.0 0.0073708780119689015 0.0 8 0.0 0.0 0.0 0.00772187220301504 0.0 9 0.0 0.0 0.0 0.008423860585107317 0.0 10 0.0 0.0 0.0 0.01158280830452256 0.0 11 0.0 0.0 0.0 0.01158280830452256 0.0 12 0.0 0.0 0.0 0.011933802495568697 0.0 13 0.0 0.0 0.0 0.012635790877660974 0.0 14 0.0 0.0 0.0 0.012635790877660974 0.0 15 0.0 0.0 0.0 0.012635790877660974 0.0 16 0.0 0.0 0.0 0.013688773450799389 0.0 17 0.0 0.0 0.0 0.013688773450799389 0.0 18 0.0 0.0 0.0 0.014741756023937803 0.0 19 0.0 0.0 0.0 0.017900703743353046 0.0 20 0.0 0.0 0.0 0.018602692125445325 0.0 21 0.0 0.0 0.0 0.020006668889629875 0.0 22 0.0 0.0 0.0 0.032642459767290855 0.0 23 0.0 0.0 0.0 0.03334444814938313 0.0 24 0.0 0.0 0.0 0.035450413295659955 0.0 25 0.0 0.0 0.0 0.03755637844193679 0.0 26 0.0 0.0 0.0 0.04141731454344431 0.0 27 0.0 0.0 0.0 0.10915919341534898 0.0 28 0.0 0.0 0.0 0.1526824731050701 0.0 29 0.0 0.0 0.0 0.19690774117688353 0.0 30 0.0 0.0 0.0 0.24394096277706603 0.0 31 0.0 0.0 0.0 0.289570207613064 0.0 32 0.0 0.0 0.0 0.3309875221565083 0.0 33 0.0 0.0 0.0 0.3762657728014601 0.0 34 0.0 0.0 0.0 0.4433056632912725 0.0 35 0.0 0.0 0.0 0.5296502342886226 0.0 36 0.0 0.0 0.0 0.7118162194415683 0.0 37 0.0 0.0 0.0 1.1410821150909953 0.0 38 0.0 0.0 0.0 1.6072024008002668 0.0 39 0.0 0.0 0.0 2.2214422351310086 0.0 40 0.0 0.0 0.0 2.948351204787561 0.0 41 0.0 0.0 0.0 3.9925589231498217 0.0 42 0.0 0.0 0.0 5.143117881399063 0.0 43 0.0 0.0 0.0 6.292623857075165 0.0 44 0.0 0.0 0.0 7.212579631807094 0.0 45 0.0 0.0 0.0 8.045839841350626 0.0 46 0.0 0.0 0.0 8.933153156315264 0.0 47 0.0 0.0 0.0 9.779400150927502 0.0 48 0.0 0.0 0.0 10.576858952984328 0.0 49 0.0 0.0 0.0 11.263754584861621 0.0 50 0.0 0.0 0.0 12.087537951246906 0.0 51 0.0 0.0 0.0 12.975553254593637 0.0 52 0.0 0.0 0.0 14.120496305786139 0.0 53 0.0 0.0 0.0 15.246134676471105 0.0 54 0.0 0.0 0.0 16.26893174917955 0.0 55 0.0 0.0 0.0 17.10324494129622 0.0 56 0.0 0.0 0.0 17.84770362050508 0.0 57 0.0 0.0 0.0 18.520208490549482 0.0 58 0.0 0.0 0.0 19.185693476772958 0.0 59 0.0 0.0 0.0 19.738158333479582 0.0 60 0.0 0.0 0.0 20.34257033046103 0.0 61 3.509941910461382E-4 0.0 0.0 20.88064442533476 0.0 62 3.509941910461382E-4 0.0 0.0 21.554553272143345 0.0 63 3.509941910461382E-4 0.0 0.0 22.246011828504237 0.0 64 3.509941910461382E-4 0.0 0.0 22.9265895649427 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATACGT 15 0.0022226735 70.004036 25 GACGAAT 65 3.6379788E-12 53.84926 23 ATCTCCG 20 0.006949935 52.493816 42 TCGTCAG 20 0.006949935 52.493816 8 CGATCGG 20 0.006949935 52.493816 43 TCGCGAT 20 0.006949935 52.493816 40 TCGGTGG 135 0.0 49.253456 45 CGACGAA 210 0.0 48.327637 22 AACTTCG 30 5.875331E-4 46.66117 43 AATCTCG 30 5.875331E-4 46.66117 41 GTACATC 40 4.5845027E-5 43.752525 38 GCCCCGT 40 4.5892564E-5 43.744846 6 CTCGGTG 120 0.0 43.744846 44 GTCGCCG 105 0.0 43.335835 51 TGGTCGC 105 0.0 43.335835 49 CGGTGGT 110 0.0 41.358765 46 ACGAATA 60 2.5894587E-7 40.83569 24 ATGTCGA 35 0.0012549066 39.99529 12 GCCGTAT 45 9.1813614E-5 38.891132 54 TCTCACG 45 9.190862E-5 38.884304 11 >>END_MODULE