SRR1779844_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779844_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	284905
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	21627	7.590951369754831	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	2682	0.9413664203857426	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	1487	0.5219283620856074	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	599	0.21024552043663677	Illumina PCR Primer Index 9 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	522	0.18321896772608412	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCGT	360	0.12635790877660974	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT	356	0.1249539320124252	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTCGTA	3055	0.0	54.055355	38
CGTCTTC	3180	0.0	53.977253	48
CCGTCTT	3185	0.0	53.974045	47
TATGCCG	3190	0.0	53.961296	43
CGTATGC	3225	0.0	53.918106	41
CTCGTAT	3180	0.0	53.910942	39
TCGTATG	3220	0.0	53.893173	40
GCCGTCT	3190	0.0	53.87999	46
ATCTCGT	3075	0.0	53.703777	37
ATGCCGT	3215	0.0	53.432865	44
GTATGCC	3240	0.0	53.344532	42
GTCTTCT	3260	0.0	53.082478	49
TGCCGTC	3240	0.0	53.02058	45
GATCTCG	3095	0.0	53.017605	36
CTTGAAA	3190	0.0	52.838303	57
CTGCTTG	3280	0.0	52.77735	54
AGATCTC	3085	0.0	52.735825	35
GCTTGAA	3230	0.0	52.50943	56
GGTGCAC	20	0.006942354	52.508297	1
CGTGCGA	20	0.006956831	52.48065	11