##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779843_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 117053 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.61986450582215 33.0 23.0 34.0 12.0 34.0 2 27.99203779484507 34.0 23.0 34.0 12.0 34.0 3 27.7407499167044 34.0 23.0 34.0 11.0 34.0 4 27.840790069455718 34.0 23.0 34.0 12.0 34.0 5 28.045552014899233 34.0 23.0 34.0 11.0 34.0 6 30.939634182806078 37.0 26.0 38.0 12.0 38.0 7 31.100108497859942 37.0 26.0 38.0 12.0 38.0 8 30.501140509000198 37.0 25.0 38.0 11.0 38.0 9 31.352207974165548 37.0 27.0 38.0 11.0 38.0 10-11 30.01699657420143 36.0 24.0 38.0 11.0 38.0 12-13 30.68896568221233 37.0 26.0 38.0 11.0 38.0 14-15 29.600108497859942 35.0 22.0 38.0 11.0 38.0 16-17 30.135891433794946 36.5 24.0 38.0 11.0 38.0 18-19 30.794798082919705 37.0 26.0 38.0 11.0 38.0 20-21 29.76546948818057 35.0 23.5 38.0 11.0 38.0 22-23 30.498722800782552 37.0 24.5 38.0 11.0 38.0 24-25 30.781445157321897 37.0 25.5 38.0 11.0 38.0 26-27 29.790641846001385 36.0 22.5 38.0 11.0 38.0 28-29 30.788762355514166 37.0 25.5 38.0 11.0 38.0 30-31 31.163669448882132 37.0 26.0 38.0 11.0 38.0 32-33 31.271116502780792 37.0 26.0 38.0 11.0 38.0 34-35 31.265486574457725 37.0 26.0 38.0 11.0 38.0 36-37 30.865129471265156 37.0 25.5 38.0 11.0 38.0 38-39 30.720169495869392 37.0 25.0 38.0 11.0 38.0 40-41 30.682438724338546 37.0 25.0 38.0 11.0 38.0 42-43 31.085683408370567 37.0 26.0 38.0 11.0 38.0 44-45 31.167894030909075 37.0 26.0 38.0 11.0 38.0 46-47 31.048443867307974 37.0 26.0 38.0 11.0 38.0 48-49 30.7568152888008 37.0 25.0 38.0 11.0 38.0 50-51 30.195022767464312 36.5 23.5 38.0 11.0 38.0 52-53 30.718055069071276 37.0 25.0 38.0 11.0 38.0 54-55 30.8402860242796 37.0 25.5 38.0 11.0 38.0 56-57 30.864343502515954 37.0 25.5 38.0 11.0 38.0 58-59 31.066538234816708 37.0 25.5 38.0 11.0 38.0 60-61 30.999431881284544 37.0 25.0 38.0 11.0 38.0 62-63 30.936678256858002 37.0 25.0 38.0 11.0 38.0 64-65 30.971111376897646 37.0 25.0 38.0 11.0 38.0 66-67 30.937502669730804 37.0 25.0 38.0 11.0 38.0 68-69 30.40856705936627 37.0 24.0 38.0 11.0 38.0 70-71 30.459471350584778 37.0 24.5 38.0 11.0 38.0 72-73 30.53916601881199 37.0 24.0 38.0 11.0 38.0 74-75 30.743880976993328 37.0 25.0 38.0 11.0 38.0 76 29.73298420373677 36.0 23.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 29.0 13 397.0 14 1626.0 15 3097.0 16 4055.0 17 4792.0 18 4749.0 19 4036.0 20 3318.0 21 2382.0 22 1794.0 23 1459.0 24 1277.0 25 1267.0 26 1340.0 27 1381.0 28 1733.0 29 1947.0 30 2328.0 31 2961.0 32 3547.0 33 4737.0 34 6626.0 35 9453.0 36 16597.0 37 30124.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.04742296224787 20.706004972106655 10.477305152366876 35.7692669132786 2 16.379759596080408 20.49584376308168 32.32723638010132 30.79716026073659 3 19.381818492477766 21.947323007526506 31.683083731301203 26.98777476869452 4 16.0696436656899 24.27874552553117 30.185471538533825 29.4661392702451 5 12.060348730916765 32.29733539507744 32.50066209323981 23.141653780765978 6 23.473075378687557 43.985852079043816 15.22781057505831 17.313261967210313 7 22.224690493075077 33.59421057578113 18.970275373587032 25.210823557556754 8 20.121143774935714 38.958231881829285 19.645282825435068 21.275341517799934 9 22.714922848208335 18.471147109584592 19.103398779925154 39.71053126228192 10-11 20.98181103640356 28.231339011866822 24.72426077967347 26.06258917205615 12-13 20.829026167633465 23.406491076691754 26.215475041220643 29.549007714454135 14-15 24.848464137580468 25.530642494970163 22.282926745919532 27.33796662152984 16-17 26.593081766379335 25.438476587528726 22.108361169726535 25.860080476365404 18-19 21.952626070612357 25.383711740959868 24.49347487131293 28.17018731711485 20-21 24.278318368602257 24.940838765345614 23.691831905205333 27.089010960846792 22-23 26.268688594617686 24.653139683895773 22.661255873558307 26.416915847928234 24-25 21.369529464533628 29.213780730045496 22.41953053247613 26.997159272944742 26-27 23.35575916789475 29.44533435851434 23.216932572990753 23.98197390060016 28-29 22.070859818194243 27.78091039573508 25.771478367849088 24.376751418221584 30-31 22.887361545986167 26.331572000358815 25.923631905614197 24.857434548040818 32-33 20.26389755068217 28.63959061279933 25.53800415196535 25.55850768455315 34-35 20.641192678186208 29.99722334949486 24.925350819111898 24.43623315320703 36-37 24.11839598055216 26.1648623014415 24.38029240115867 25.33644931684767 38-39 24.155637767961654 25.027981647456876 26.85255594193488 23.963824642646596 40-41 21.21740244761966 27.517139744986224 25.868734115033853 25.39672369236027 42-43 19.227779106721798 26.99868434541913 26.648412671291393 27.12512387656768 44-45 18.56751688402671 25.0579887824278 28.979867319957116 27.394627013588384 46-47 20.067833969098807 26.234830265569137 27.466777160285517 26.23055860504654 48-49 20.52104602188752 27.202207547008623 26.416238797809537 25.860507633294322 50-51 23.71038017941051 26.623665100384454 23.85689876121316 25.809055958991884 52-53 17.956604765017236 28.664436669358047 25.89530974320855 27.483648822416175 54-55 18.872583573640927 26.557727224180283 25.959628324255046 28.610060877923743 56-57 20.31579756829037 27.321274468757746 24.735340106120287 27.6275878568316 58-59 19.867818449024234 26.982723264636522 25.300334939676684 27.849123346662562 60-61 18.700461892777636 26.120228852702777 25.65107226635105 29.528236988168537 62-63 19.517936405541768 26.609192701546924 24.89608120404824 28.976789688863064 64-65 20.012988511149185 25.754423143476053 24.5914386912366 29.641149654138164 66-67 18.65902167457798 29.763771453474213 22.771338115725925 28.80586875622188 68-69 19.055897755717496 31.556218123414183 21.97337958019017 27.414504540678152 70-71 18.836500017086426 31.214759252298123 23.278970030413834 26.669770700201617 72-73 19.537961408500042 29.337058348605044 24.118619523010086 27.00636071988483 74-75 19.086637047163364 29.619788106630214 23.03144224196856 28.262132604237866 76 20.685707450853076 29.35743761053252 22.49267388314096 27.464181055473443 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.5 15 4.0 16 8.5 17 12.0 18 9.5 19 11.5 20 22.0 21 28.0 22 34.5 23 76.5 24 148.0 25 184.0 26 214.5 27 282.0 28 430.0 29 541.0 30 616.5 31 832.0 32 1193.5 33 1415.0 34 1671.0 35 2160.5 36 2732.5 37 3071.0 38 3473.0 39 4349.5 40 5207.0 41 5843.0 42 6096.0 43 6473.5 44 7199.0 45 7653.5 46 7760.0 47 7812.0 48 7626.5 49 7105.0 50 6821.0 51 6574.5 52 5869.0 53 5095.5 54 4781.0 55 4539.0 56 3896.0 57 3202.0 58 2909.0 59 2635.0 60 2150.0 61 1768.5 62 1598.0 63 1444.0 64 1189.5 65 952.0 66 801.5 67 788.0 68 728.5 69 568.5 70 440.0 71 412.0 72 401.5 73 332.5 74 266.0 75 258.0 76 219.5 77 161.5 78 133.5 79 125.0 80 115.5 81 91.0 82 68.0 83 60.0 84 57.0 85 44.0 86 26.5 87 19.0 88 17.5 89 15.5 90 13.5 91 9.0 92 6.0 93 5.0 94 3.5 95 6.0 96 9.0 97 7.0 98 4.0 99 6.5 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.003417255431300351 7 0.010251766293901053 8 0.0017086277156501755 9 0.009397452436075966 10-11 0.003417255431300351 12-13 0.0 14-15 0.0012814707867376317 16-17 0.0 18-19 0.004698726218037983 20-21 0.0 22-23 0.0025629415734752634 24-25 0.004698726218037983 26-27 4.271569289125439E-4 28-29 0.004271569289125439 30-31 0.0012814707867376317 32-33 0.0 34-35 0.004698726218037983 36-37 0.01879490487215193 38-39 0.010251766293901053 40-41 4.271569289125439E-4 42-43 8.543138578250878E-4 44-45 0.0038444123602128953 46-47 0.0021357846445627196 48-49 0.0 50-51 0.0025629415734752634 52-53 0.010678923222813597 54-55 0.013241864796288862 56-57 0.013669021725201404 58-59 0.014523335583026492 60-61 0.029473828094965526 62-63 0.012387550938463773 64-65 0.022639317232364828 66-67 0.022639317232364828 68-69 0.0 70-71 8.543138578250878E-4 72-73 0.005553040075863071 74-75 0.011106080151726141 76 0.005125883146950527 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 117053.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 70.28354676941214 #Duplication Level Percentage of deduplicated Percentage of total 1 84.60173333819543 59.46109881848394 2 6.507919143298205 9.14799278959104 3 3.5238060508818636 7.429967621504789 4 1.9168824222975847 5.389011815160654 5 1.1511018731235338 4.045176116801791 6 0.657598852544701 2.773102782500235 7 0.4655459529105738 2.2904154528290603 8 0.28443277540750467 1.5992755418485642 9 0.20542367112764223 1.2994113777519585 >10 0.68555592021296 6.564547683527974 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.005125883146950527 0.0 2 0.0 0.0 0.0 0.005125883146950527 0.0 3 0.0 0.0 0.0 0.005125883146950527 0.0 4 0.0 0.0 0.0 0.005125883146950527 0.0 5 0.0 0.0 0.0 0.008543138578250878 0.0 6 0.0 0.0 0.0 0.012814707867376316 0.0 7 0.0 0.0 0.0 0.012814707867376316 0.0 8 0.0 0.0 0.0 0.012814707867376316 0.0 9 0.0 0.0 0.0 0.014523335583026492 0.0 10 0.0 0.0 0.0 0.01623196329867667 0.0 11 0.0 0.0 0.0 0.01623196329867667 0.0 12 0.0 0.0 0.0 0.017940591014326844 0.0 13 0.0 0.0 0.0 0.01964921872997702 0.0 14 0.0 0.0 0.0 0.01964921872997702 0.0 15 0.0 0.0 0.0 0.020503532587802107 0.0 16 0.0 0.0 0.0 0.020503532587802107 0.0 17 0.0 0.0 0.0 0.021357846445627195 0.0 18 0.0 0.0 0.0 0.023920788019102458 0.0 19 0.0 0.0 0.0 0.023920788019102458 0.0 20 0.0 0.0 0.0 0.025629415734752633 0.0 21 0.0 0.0 0.0 0.03246392659735334 0.0 22 0.0 0.0 0.0 0.045278634464729656 0.0 23 0.0 0.0 0.0 0.045278634464729656 0.0 24 0.0 0.0 0.0 0.05723902847428088 0.0 25 0.0 0.0 0.0 0.05894765618993106 0.0 26 0.0 0.0 0.0 0.06236491162123141 0.0 27 0.0 0.0 0.0 0.07090805019948229 0.0 28 0.0 0.0 0.0 0.0914115827872844 0.0 29 0.0 0.0 0.0 0.11618668466421193 0.0 30 0.0 0.0 0.0 0.155485122124166 0.0 31 0.0 0.0 0.0 0.19222061801064474 0.0 32 0.0 0.0 0.0 0.21528709217192213 0.0 33 0.0 0.0 0.0 0.25373121577405106 0.0 34 0.0 0.0 0.0 0.3075529888170316 0.0 35 0.0 0.0 0.0 0.379315352874339 0.0 36 0.0 0.0 0.0 0.4929390959650756 0.0 37 0.0 0.0 0.0 0.7475246255969518 0.0 38 0.0 0.0 0.0 1.0294481986792308 0.0 39 0.0 0.0 0.0 1.353233150794939 0.0 40 0.0 0.0 0.0 1.8162712617361367 0.0 41 0.0 0.0 0.0 2.297249963691661 0.0 42 0.0 0.0 0.0 2.8089839645288888 0.0 43 0.0 0.0 0.0 3.1959881421236536 0.0 44 0.0 0.0 0.0 3.665860763927452 0.0 45 0.0 0.0 0.0 4.166488684612953 0.0 46 0.0 0.0 0.0 4.697017590322333 0.0 47 0.0 0.0 0.0 5.177996292277857 0.0 48 0.0 0.0 0.0 5.707670884129412 0.0 49 0.0 0.0 0.0 6.1578942872032325 0.0 50 0.0 0.0 0.0 6.668773974182635 0.0 51 0.0 0.0 0.0 7.1617130701477105 0.0 52 0.0 0.0 0.0 7.736666296463995 0.0 53 0.0 0.0 0.0 8.183472444106515 0.0 54 0.0 0.0 0.0 8.57560250484823 0.0 55 0.0 0.0 0.0 9.05060100979898 0.0 56 0.0 0.0 0.0 9.553791872057957 0.0 57 0.0 0.0 0.0 10.000598019700478 0.0 58 0.0 0.0 0.0 10.439715342622574 0.0 59 0.0 0.0 0.0 10.833554031079938 0.0 60 0.0 0.0 0.0 11.282923120295933 0.0 61 0.0 0.0 0.0 11.692139458194152 0.0 62 0.0 0.0 0.0 12.082560891220217 0.0 63 0.0 0.0 0.0 12.507154878559286 0.0 64 0.0 0.0 0.0 12.8890331730071 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGATC 15 0.0022199021 70.0 38 GCGCGAA 15 0.0022199021 70.0 26 GCCGGTT 15 0.0022199021 70.0 24 ATTCGGT 15 0.0022199021 70.0 11 GTGTCGA 20 7.898952E-5 70.0 36 CCGGTTA 15 0.0022199021 70.0 25 TGTCGAT 20 7.898952E-5 70.0 37 CTAATGG 15 0.0022199021 70.0 1 GATCTCG 85 0.0 57.64706 41 TTCCGAC 55 3.45608E-11 57.272724 19 CTTCCGA 50 9.695214E-10 55.999996 18 GAAACTC 25 2.382145E-4 55.999996 26 CGAGCGA 25 2.382145E-4 55.999996 25 CTCGGTG 85 0.0 53.52941 44 CGGTGGT 85 0.0 53.52941 46 CTTCGTG 20 0.006936527 52.5 36 ATCTCGG 80 0.0 52.5 42 AGATCCG 20 0.006936527 52.5 54 CGGCCAT 20 0.006936527 52.5 2 GATCCGC 20 0.006936527 52.5 55 >>END_MODULE