##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779842_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 252295 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.01221982203373 34.0 24.0 34.0 12.0 34.0 2 29.703684179234624 34.0 31.0 34.0 12.0 34.0 3 29.3580411819497 34.0 27.0 34.0 11.0 34.0 4 29.62954477892943 34.0 27.0 34.0 12.0 34.0 5 30.245910541231495 34.0 32.0 34.0 11.0 34.0 6 32.76988842426525 37.0 32.0 38.0 12.0 38.0 7 32.61224756733189 37.0 31.0 38.0 12.0 38.0 8 32.11141719019402 37.0 31.0 38.0 11.0 38.0 9 33.05026258942904 37.0 34.0 38.0 12.0 38.0 10-11 31.64585505063517 37.0 28.5 38.0 11.5 38.0 12-13 32.50779246516974 37.0 31.0 38.0 11.0 38.0 14-15 31.313286034205987 37.0 27.0 38.0 11.0 38.0 16-17 31.938698745516163 37.0 29.0 38.0 11.0 38.0 18-19 32.7925900235835 37.5 33.5 38.0 11.0 38.0 20-21 31.520339285360393 37.0 27.5 38.0 11.0 38.0 22-23 32.42096949999009 37.0 32.5 38.0 11.0 38.0 24-25 32.73246199885055 37.5 32.5 38.0 11.0 38.0 26-27 31.632868269287936 37.0 28.5 38.0 11.0 38.0 28-29 32.83023444776948 37.5 32.5 38.0 11.0 38.0 30-31 33.25000693632454 38.0 34.0 38.0 11.0 38.0 32-33 33.33597177906816 38.0 34.0 38.0 11.0 38.0 34-35 33.283380566400446 38.0 34.0 38.0 11.0 38.0 36-37 32.8042252125488 38.0 32.5 38.0 11.0 38.0 38-39 32.74074595215917 38.0 32.5 38.0 11.0 38.0 40-41 32.71788382647298 37.5 32.5 38.0 11.0 38.0 42-43 33.12225569274064 38.0 34.0 38.0 11.0 38.0 44-45 33.18528508293862 38.0 34.0 38.0 11.0 38.0 46-47 33.08648209437365 38.0 34.0 38.0 11.0 38.0 48-49 32.80873382350027 37.5 33.0 38.0 11.0 38.0 50-51 32.18774450544006 37.5 30.5 38.0 11.0 38.0 52-53 32.76601597336452 37.0 33.0 38.0 11.0 38.0 54-55 32.89877127965279 37.5 33.0 38.0 11.0 38.0 56-57 32.96610515468004 38.0 34.0 38.0 11.0 38.0 58-59 33.223510176579005 38.0 34.0 38.0 11.0 38.0 60-61 33.103747597059 38.0 34.0 38.0 11.0 38.0 62-63 33.105539150597515 38.0 34.0 38.0 11.0 38.0 64-65 33.12366079391189 38.0 34.0 38.0 11.0 38.0 66-67 32.96996373293169 38.0 34.0 38.0 11.0 38.0 68-69 32.35152301868844 37.0 31.0 38.0 11.0 38.0 70-71 32.39958976594859 37.0 31.0 38.0 11.0 38.0 72-73 32.55630511900751 37.0 31.5 38.0 11.0 38.0 74-75 32.715059751481405 37.5 32.0 38.0 11.0 38.0 76 31.576888166630333 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 30.0 13 501.0 14 1992.0 15 3732.0 16 5116.0 17 5955.0 18 6221.0 19 5455.0 20 4353.0 21 3451.0 22 2687.0 23 2341.0 24 2284.0 25 2451.0 26 2738.0 27 3013.0 28 3709.0 29 4562.0 30 5437.0 31 6809.0 32 8556.0 33 11365.0 34 15518.0 35 22855.0 36 40420.0 37 80741.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.76165014487124 23.32724253150107 10.033572076910577 28.877535246717112 2 19.2397788303375 24.940644880001585 31.219009492855587 24.600566796805325 3 17.670980399928656 22.295725242275907 32.75490992687132 27.27838443092412 4 12.795735151310966 21.70276858439525 31.787788105194316 33.71370815909947 5 13.081115360986148 33.82548207455558 36.17709427455954 16.91630828989873 6 26.674488477362996 40.03551524856711 17.305756165621556 15.984240108448347 7 25.887608560363724 28.941370466824427 19.308384764486938 25.86263620832491 8 23.098601598173516 36.15510844748858 19.74806570268899 20.99822425164891 9 22.894245519734575 18.449853928085844 20.067545872923382 38.588354679256206 10-11 22.848111300487535 26.753933964881682 25.057077173094456 25.340877561536328 12-13 22.926976212323297 23.586126530701222 26.063390204701253 27.423507052274225 14-15 24.09198017388478 25.67069702548817 22.94093981810867 27.296382982518374 16-17 24.552308021593856 26.849825996654697 23.636313190167026 24.96155279158442 18-19 21.718984416649985 26.543421519411307 26.028732978316494 25.708861085622214 20-21 23.55635268237579 25.792623714302703 25.606135674508018 25.04488792881349 22-23 24.638657727165526 25.971655465865467 24.374476046272424 25.015210760696583 24-25 21.58302895296456 28.555403833309885 24.1449768816256 25.71659033209996 26-27 23.07911832670744 28.226506482542124 25.11306298628975 23.581312204460687 28-29 21.860277985329763 27.530179820397617 26.609970290887684 23.999571903384936 30-31 22.472437855117157 27.26090842609897 26.00284985542632 24.26380386335756 32-33 21.33752155215125 28.11391426702868 25.903604906954158 24.64495927386591 34-35 21.52957661062566 28.338727354524934 25.784081923059393 24.347614111790016 36-37 23.30446744113677 26.66689130396003 25.53927816109269 24.489363093810514 38-39 23.11291866597694 25.969132829517054 26.924045038242074 23.99390346626393 40-41 21.66211508048182 26.78433408774718 26.766894047793638 24.78665678397736 42-43 20.21851534026838 26.359577238414783 27.45968485117532 25.962222570141524 44-45 19.78452769310655 24.874248363940495 28.981540571501053 26.359683371451904 46-47 20.438231062242604 25.059357002144385 28.61701157808369 25.88540035752932 48-49 20.223587910160546 25.86540729187517 28.48595589677936 25.425048901184926 50-51 22.201236672083713 25.71703198699909 27.02604146022434 25.055689880692857 52-53 18.050790517359275 26.938239159001316 28.107812416384732 26.90315790725468 54-55 18.31666488288481 26.466367784106897 27.785375367161762 27.431591965846525 56-57 18.904101986775967 26.796700334564825 27.13463459495457 27.16456308370463 58-59 18.89150293634387 26.782468748699305 27.171933190496674 27.15409512446015 60-61 18.266369858804826 26.035771558380034 27.54009582162984 28.1577627611853 62-63 19.378174877662538 26.19379364063209 26.681557912345134 27.746473569360237 64-65 19.917739521699918 25.45852783476546 25.901346891445904 28.722385752088726 66-67 19.560559360164913 27.209839347479214 24.669131128531927 28.560470163823947 68-69 20.171744416721 28.13013414931419 23.739612792243953 27.958508641720854 70-71 20.006183250130306 28.164902524628953 24.34436739603915 27.48454682920159 72-73 20.483021320955896 27.543036303891995 24.711737029652735 27.262205345499375 74-75 20.370979633578827 27.909686932669516 24.177296474524134 27.542036959227516 76 21.24380673034999 27.525466724800822 24.153553450394387 27.077173094454793 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1.0 1 0.5 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.0 12 2.0 13 4.5 14 9.5 15 8.5 16 19.5 17 34.0 18 35.0 19 56.0 20 95.5 21 115.0 22 161.5 23 306.0 24 500.5 25 597.0 26 733.0 27 965.0 28 1231.0 29 1401.0 30 1734.0 31 2369.0 32 3310.0 33 3949.0 34 4427.0 35 5471.5 36 6713.5 37 7389.0 38 8180.5 39 9925.0 40 11904.0 41 13364.5 42 13799.0 43 14574.5 44 15852.5 45 16408.0 46 16461.0 47 16607.0 48 16167.5 49 15231.5 50 14881.0 51 14045.0 52 12051.5 53 10042.0 54 9190.0 55 8387.0 56 6873.0 57 5563.0 58 4964.0 59 4597.5 60 3783.0 61 3051.0 62 2767.0 63 2519.0 64 2102.5 65 1742.5 66 1409.0 67 1267.0 68 1300.5 69 1192.5 70 991.0 71 931.0 72 898.0 73 801.5 74 729.0 75 720.0 76 664.5 77 568.0 78 513.0 79 499.0 80 459.5 81 375.5 82 284.0 83 237.0 84 223.5 85 209.0 86 171.0 87 134.0 88 114.5 89 82.5 90 59.0 91 40.5 92 33.0 93 23.5 94 16.5 95 16.0 96 13.0 97 12.0 98 9.5 99 5.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 7.927228046532829E-4 2 0.0 3 0.0 4 0.0 5 0.0 6 0.003567252620939773 7 0.006341782437226263 8 0.00277452981628649 9 0.00871995085118611 10-11 0.001981807011633207 12-13 1.981807011633207E-4 14-15 5.945421034899621E-4 16-17 3.963614023266414E-4 18-19 0.002576349115123169 20-21 0.0 22-23 0.002576349115123169 24-25 0.002576349115123169 26-27 7.927228046532829E-4 28-29 0.006143601736062943 30-31 5.945421034899621E-4 32-33 0.0 34-35 0.0037654333221030937 36-37 0.014467191184922411 38-39 0.00812540874769615 40-41 7.927228046532829E-4 42-43 5.945421034899621E-4 44-45 0.004756336827919697 46-47 0.0031708912186131314 48-49 1.981807011633207E-4 50-51 0.001981807011633207 52-53 0.009314492954676073 54-55 0.00871995085118611 56-57 0.010701757862819319 58-59 0.010107215759329357 60-61 0.0219980578291286 62-63 0.00852177015002279 64-65 0.018827166610515467 66-67 0.01684535959888226 68-69 5.945421034899621E-4 70-71 1.981807011633207E-4 72-73 0.0031708912186131314 74-75 0.006738143839552904 76 0.001981807011633207 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 252295.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.29539928605347 #Duplication Level Percentage of deduplicated Percentage of total 1 78.53776372284594 48.14003586425566 2 8.266003682060918 10.13335992383824 3 5.091886721516809 9.363276891441794 4 3.0870988435776363 7.5689982501042055 5 1.8059177161199405 5.534722374366474 6 1.009426408477154 3.712391685449643 7 0.5673953848326997 2.4345108666469004 8 0.350008786487284 1.7163142657092085 9 0.24118679549822705 1.3305276839328795 >10 1.0373503430877877 9.85960382186256 >50 0.005961595495616921 0.20625837239241634 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.927228046532829E-4 0.0 2 0.0 0.0 0.0 7.927228046532829E-4 0.0 3 0.0 3.963614023266414E-4 0.0 7.927228046532829E-4 0.0 4 0.0 3.963614023266414E-4 0.0 0.0015854456093065657 0.0 5 0.0 3.963614023266414E-4 0.0 0.0015854456093065657 0.0 6 0.0 3.963614023266414E-4 0.0 0.0015854456093065657 0.0 7 0.0 3.963614023266414E-4 0.0 0.0015854456093065657 0.0 8 0.0 3.963614023266414E-4 0.0 0.0019818070116332073 0.0 9 0.0 3.963614023266414E-4 0.0 0.0031708912186131314 0.0 10 0.0 3.963614023266414E-4 0.0 0.0031708912186131314 0.0 11 0.0 3.963614023266414E-4 0.0 0.0031708912186131314 0.0 12 0.0 3.963614023266414E-4 0.0 0.003567252620939773 0.0 13 0.0 3.963614023266414E-4 0.0 0.003567252620939773 0.0 14 0.0 3.963614023266414E-4 0.0 0.003963614023266415 0.0 15 0.0 3.963614023266414E-4 0.0 0.004359975425593056 0.0 16 0.0 3.963614023266414E-4 0.0 0.004756336827919697 0.0 17 0.0 3.963614023266414E-4 0.0 0.004756336827919697 0.0 18 0.0 3.963614023266414E-4 0.0 0.004756336827919697 0.0 19 0.0 3.963614023266414E-4 0.0 0.007134505241879546 0.0 20 0.0 3.963614023266414E-4 0.0 0.013476287679105808 0.0 21 0.0 3.963614023266414E-4 0.0 0.01387264908143245 0.0 22 0.0 3.963614023266414E-4 0.0 0.029727105174498107 0.0 23 0.0 3.963614023266414E-4 0.0 0.029727105174498107 0.0 24 0.0 3.963614023266414E-4 0.0 0.03408708060009116 0.0 25 0.0 3.963614023266414E-4 0.0 0.03686161041637765 0.0 26 0.0 3.963614023266414E-4 0.0 0.041221585841970707 0.0 27 0.0 3.963614023266414E-4 0.0 0.078479557660675 0.0 28 0.0 3.963614023266414E-4 0.0 0.11296299966309281 0.0 29 0.0 3.963614023266414E-4 0.0 0.17281357141441567 0.0 30 0.0 3.963614023266414E-4 0.0 0.24257317822390456 0.0 31 0.0 3.963614023266414E-4 0.0 0.2996492201589409 0.0 32 0.0 3.963614023266414E-4 0.0 0.34760894984046453 0.0 33 0.0 3.963614023266414E-4 0.0 0.3951723181196615 0.0 34 0.0 3.963614023266414E-4 0.0 0.46810281614776356 0.0 35 0.0 3.963614023266414E-4 0.0 0.5893894052597158 0.0 36 0.0 3.963614023266414E-4 0.0 0.8046136467230821 0.0 37 0.0 3.963614023266414E-4 0.0 1.2215858419707089 0.0 38 0.0 3.963614023266414E-4 0.0 1.7911571771140926 0.0 39 0.0 3.963614023266414E-4 0.0 2.4594225014368103 0.0 40 0.0 3.963614023266414E-4 0.0 3.2933668919320636 0.0 41 0.0 3.963614023266414E-4 0.0 4.3548227273628095 0.0 42 0.0 3.963614023266414E-4 0.0 5.462256485463445 0.0 43 0.0 3.963614023266414E-4 0.0 6.589904675082741 0.0 44 0.0 3.963614023266414E-4 0.0 7.6668186052042255 0.0 45 0.0 3.963614023266414E-4 0.0 8.708060009116313 0.0 46 0.0 3.963614023266414E-4 0.0 9.79646841990527 0.0 47 0.0 3.963614023266414E-4 0.0 10.786975564319546 0.0 48 0.0 3.963614023266414E-4 0.0 11.762817336847737 0.0 49 0.0 3.963614023266414E-4 0.0 12.676826730612973 0.0 50 0.0 3.963614023266414E-4 0.0 13.517112903545453 0.0 51 0.0 3.963614023266414E-4 0.0 14.457678511266574 0.0 52 0.0 3.963614023266414E-4 0.0 15.483461820487921 0.0 53 0.0 3.963614023266414E-4 0.0 16.49378703501853 0.0 54 0.0 3.963614023266414E-4 0.0 17.448225291821082 0.0 55 0.0 3.963614023266414E-4 0.0 18.221922749162687 0.0 56 0.0 3.963614023266414E-4 0.0 19.059038030876554 0.0 57 0.0 3.963614023266414E-4 0.0 19.825997344378603 0.0 58 0.0 3.963614023266414E-4 0.0 20.546582373808437 0.0 59 0.0 3.963614023266414E-4 0.0 21.23585485245447 0.0 60 0.0 3.963614023266414E-4 0.0 21.931469113537723 0.0 61 0.0 3.963614023266414E-4 0.0 22.623119760597714 0.0 62 0.0 3.963614023266414E-4 0.0 23.238669018410988 0.0 63 0.0 3.963614023266414E-4 0.0 23.875225430547573 0.0 64 0.0 3.963614023266414E-4 0.0 24.560930656572662 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAATCGA 25 2.388718E-4 55.993977 9 GCGTACA 20 0.0069432906 52.504757 36 CGATGAC 20 0.006948737 52.49435 22 GACGACT 20 0.006948737 52.49435 23 ACGTGTA 30 5.862276E-4 46.68015 34 ATCTCGG 135 0.0 46.661644 42 CGACGTA 30 5.873748E-4 46.661644 22 TCGGTGG 105 0.0 46.661644 45 TGGTCGC 85 1.8189894E-12 45.298225 49 GATCTCG 125 0.0 44.795177 41 CGACGAA 165 0.0 44.54066 22 AGATCTC 150 0.0 44.32856 40 CGCTTAT 40 4.5821107E-5 43.753963 50 AGTCCAT 40 4.5874775E-5 43.745293 21 CGACGAG 75 7.530616E-10 41.99548 22 CTCGGTG 130 0.0 40.38027 44 GCGGTCG 35 0.0012533477 40.003624 48 TCGCTTA 35 0.0012533477 40.003624 49 CGGTGGT 105 0.0 39.995697 46 CGCTATG 35 0.0012545704 39.995693 25 >>END_MODULE