SRR1779842_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779842_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	252295
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	27157	10.763986602984602	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	3558	1.41025386947819	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	1997	0.791533720446303	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	685	0.27150756059374936	Illumina PCR Primer Index 10 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	682	0.2703184763867695	No Hit
CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	298	0.11811569789333914	Illumina PCR Primer Index 10 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT	278	0.11018846984680632	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTAACTCGTATGCCGT	278	0.11018846984680632	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGGCA	15	0.0022191424	70.02975	51
AACTCGT	65	3.6379788E-12	53.83701	37
TAACTCG	65	3.6379788E-12	53.83701	36
CTCGTAT	3905	0.0	52.69271	39
TCGTATG	3910	0.0	52.535828	40
CAATACG	20	0.0069395564	52.511894	69
CGTATGC	3920	0.0	52.49108	41
AGCGCCG	20	0.006950449	52.491077	40
GAGCAAC	20	0.006950449	52.491077	44
TATGCCG	3910	0.0	52.177834	43
CCGTCTT	3920	0.0	52.15467	47
CGTCTTC	3875	0.0	52.12794	48
CTTGAAA	3845	0.0	52.08975	57
GTATGCC	3925	0.0	51.978428	42
GCCGTCT	3925	0.0	51.909847	46
TCTCGTA	3805	0.0	51.870293	38
TGCCGTC	3955	0.0	51.761116	45
ATCTCGT	3840	0.0	51.670906	37
ATGCCGT	3950	0.0	51.649452	44
TCTTCTG	3940	0.0	51.633606	50