##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779841_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 62366 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.50771253567649 23.0 12.0 34.0 12.0 34.0 2 24.548632267581695 24.0 12.0 34.0 12.0 34.0 3 24.760398293942213 27.0 11.0 34.0 11.0 34.0 4 25.156206907609917 27.0 12.0 34.0 12.0 34.0 5 24.850768046692107 31.0 11.0 34.0 11.0 34.0 6 27.16661321874098 31.0 12.0 38.0 11.0 38.0 7 27.46475643780265 33.0 12.0 38.0 11.0 38.0 8 27.273883205592792 31.0 11.0 37.0 11.0 38.0 9 27.62708847769618 34.0 12.0 38.0 11.0 38.0 10-11 26.3510245967354 28.0 11.5 37.0 11.0 38.0 12-13 26.663173844723087 30.5 11.0 38.0 11.0 38.0 14-15 25.746207869672578 27.0 11.0 37.0 11.0 38.0 16-17 26.028797742359618 27.5 11.0 37.0 11.0 38.0 18-19 26.232618734566913 28.0 11.0 38.0 11.0 38.0 20-21 25.87631081037745 28.5 11.0 37.0 11.0 38.0 22-23 26.240555751531282 29.0 11.0 38.0 11.0 38.0 24-25 26.53174005066863 31.0 11.0 38.0 11.0 38.0 26-27 25.60582689285829 26.5 11.0 37.0 11.0 38.0 28-29 26.04593849212712 27.0 11.0 38.0 11.0 38.0 30-31 26.22224449219126 28.0 11.0 38.0 11.0 38.0 32-33 26.469109771349775 31.0 11.0 38.0 11.0 38.0 34-35 26.514398871179807 31.0 11.0 38.0 11.0 38.0 36-37 26.187626270724433 29.0 11.0 38.0 11.0 38.0 38-39 25.98031780136613 27.0 11.0 38.0 11.0 38.0 40-41 26.018904531315137 27.0 11.0 38.0 11.0 38.0 42-43 26.287263893788282 29.0 11.0 38.0 11.0 38.0 44-45 26.38723823878395 31.0 11.0 38.0 11.0 38.0 46-47 26.28962896449989 29.0 11.0 38.0 11.0 38.0 48-49 25.96813969149857 27.0 11.0 38.0 11.0 38.0 50-51 25.58521470031748 26.5 11.0 37.5 11.0 38.0 52-53 26.064402078055352 27.0 11.0 37.5 11.0 38.0 54-55 26.070791777571113 27.0 11.0 38.0 11.0 38.0 56-57 26.14909566109739 29.0 11.0 38.0 11.0 38.0 58-59 26.087251066286118 28.5 11.0 38.0 11.0 38.0 60-61 26.18750601289164 28.0 11.0 38.0 11.0 38.0 62-63 26.072371163775134 27.0 11.0 38.0 11.0 38.0 64-65 26.04933778020075 27.5 11.0 38.0 11.0 38.0 66-67 26.280882211461375 29.0 11.0 38.0 11.0 38.0 68-69 25.893836385209887 27.0 11.0 38.0 11.0 38.0 70-71 25.95881570086265 27.0 11.0 37.0 11.0 38.0 72-73 25.693711317063787 27.0 11.0 37.5 11.0 38.0 74-75 25.92228137125998 27.0 11.0 37.5 11.0 38.0 76 24.92927235993971 25.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 32.0 13 427.0 14 1697.0 15 3180.0 16 4382.0 17 5063.0 18 5131.0 19 4521.0 20 3394.0 21 2449.0 22 1726.0 23 1098.0 24 860.0 25 646.0 26 630.0 27 587.0 28 586.0 29 695.0 30 731.0 31 867.0 32 1136.0 33 1549.0 34 2015.0 35 2975.0 36 5274.0 37 10713.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.74117307507296 19.194753551614664 9.59016130583972 34.47391206747266 2 14.200044896257577 22.5876278741622 28.7592598531251 34.453067376455124 3 13.674117307507297 21.258377962351283 39.65942981752878 25.408074912612644 4 10.335759869159478 38.060802360260396 23.623448673956965 27.979989096623157 5 11.296219093736973 32.37020171247154 36.36115832344547 19.97242087034602 6 17.744495935089716 40.026939050398475 14.268075621762904 27.960489392748904 7 16.492679719696604 37.51703789227241 14.993345199724187 30.996937188306795 8 14.150565220877095 41.38218552072477 13.839493305539966 30.62775595285817 9 19.350234922467568 20.75495902888023 15.719760747903337 44.17504530074886 10-11 15.90074561051872 32.22240038483123 22.370720756834764 29.50613324781528 12-13 15.631914825385627 24.653657441554692 26.456723214572044 33.257704518487635 14-15 24.890364063464578 28.302506995053356 20.18503820221116 26.62209073927091 16-17 26.48018535889234 26.056072668382356 19.317571413682245 28.14617055904306 18-19 18.681953018520005 25.820572436462758 23.653491541730137 31.8439830032871 20-21 24.526985857678863 24.838854504056698 21.21989545585736 29.41426418240708 22-23 26.89772945930344 24.462029375922008 19.485600667051504 29.154640497723044 24-25 18.76548356837624 32.34853161654467 18.502513449157775 30.383471365921316 26-27 22.650525134290067 32.57756754589914 20.992543894812794 23.779363424997996 28-29 19.129437798659442 30.34139379750489 24.38263686219172 26.146531541643952 30-31 21.26335874802575 27.904851239868194 24.46144102107736 26.370348991028692 32-33 16.884199724208703 31.714395664304266 24.166212359298335 27.235192252188696 34-35 16.833564504878655 34.18425842039014 22.910035517570375 26.072141557160837 36-37 22.560858269989417 26.695852977965938 23.575162769813016 27.16812598223163 38-39 23.28001603527761 23.959110042092604 26.688314291441174 26.072559631188614 40-41 19.05365102780361 29.52971170188885 24.047557964275406 27.369079306032134 42-43 14.405400421707515 28.530196983909374 26.290978185054236 30.773424409328875 44-45 14.066032743774354 24.395875759665188 30.38580568606385 31.15228581049661 46-47 16.780110798438237 27.760540683551 27.01814304383032 28.441205474180435 48-49 17.586505467722798 28.376038225956453 25.666228393676043 28.37122791264471 50-51 23.56728240651658 27.500641395676993 21.425822589955743 27.506253607850685 52-53 12.276298909557408 31.362251443232843 24.885343168697883 31.476106478511866 54-55 15.391584618838394 26.300471440941596 24.664058240595235 33.64388569962477 56-57 17.27427980404577 28.78538842074036 22.44894686625562 31.491384908958253 58-59 16.06786347126787 29.348706312489476 23.00494704179729 31.57848317444536 60-61 13.59270009782382 26.65859486505124 24.28195711788572 35.466747919239225 62-63 16.363315640084032 27.380169662759187 22.859571192610527 33.39694350454626 64-65 16.646754600489118 26.493204506274303 22.32610351601652 34.53393737722006 66-67 14.890784873464414 33.58725983898387 18.565769637874073 32.95618564967765 68-69 15.971041913863324 36.078151556938074 17.406920437417824 30.543886091780774 70-71 14.827790783439696 35.96751435076805 19.311804508867013 29.89289035692525 72-73 16.463155531681192 33.226165946426995 21.24800564432721 29.062672877564598 74-75 15.657347198948052 33.579750002004474 18.344144129697483 32.41875866934999 76 18.1560169967129 32.83732862984046 17.795237713461077 31.21141665998557 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 1.0 12 1.0 13 3.0 14 8.0 15 12.0 16 16.0 17 19.0 18 31.0 19 43.0 20 60.5 21 78.0 22 105.0 23 138.5 24 167.0 25 189.0 26 252.0 27 347.0 28 453.5 29 528.0 30 571.0 31 650.0 32 824.0 33 962.0 34 1003.0 35 1149.5 36 1439.5 37 1624.0 38 1704.0 39 1955.0 40 2312.0 41 2662.0 42 2826.0 43 3032.5 44 3366.0 45 3458.5 46 3424.0 47 3540.5 48 3696.0 49 3631.0 50 3527.0 51 3400.5 52 3225.0 53 2977.0 54 2778.0 55 2671.5 56 2406.5 57 2063.0 58 1878.0 59 1798.0 60 1543.0 61 1240.5 62 1113.0 63 983.0 64 745.5 65 593.0 66 486.5 67 425.0 68 378.0 69 292.5 70 216.5 71 179.0 72 158.5 73 127.5 74 98.0 75 79.0 76 69.0 77 51.5 78 41.0 79 38.0 80 34.5 81 28.5 82 17.0 83 8.0 84 14.5 85 16.5 86 11.0 87 10.0 88 8.0 89 5.5 90 4.5 91 5.0 92 6.0 93 4.0 94 3.0 95 2.5 96 1.0 97 1.0 98 4.5 99 6.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0048103133117403715 7 0.00801718885290062 8 0.0016034377705801239 9 0.00801718885290062 10-11 0.0016034377705801239 12-13 0.0 14-15 8.017188852900619E-4 16-17 8.017188852900619E-4 18-19 0.0016034377705801239 20-21 0.0 22-23 0.0032068755411602478 24-25 0.0024051566558701857 26-27 0.0016034377705801239 28-29 0.0064137510823204956 30-31 8.017188852900619E-4 32-33 0.0 34-35 0.00400859442645031 36-37 0.012827502164640991 38-39 0.005612032197030433 40-41 0.0 42-43 8.017188852900619E-4 44-45 0.0048103133117403715 46-47 8.017188852900619E-4 48-49 0.0 50-51 0.0032068755411602478 52-53 0.009620626623480743 54-55 0.0064137510823204956 56-57 0.007215469967610557 58-59 0.008818907738190681 60-61 0.014430939935221114 62-63 0.011224064394060866 64-65 0.013629221049931051 66-67 0.019241253246961486 68-69 0.0 70-71 0.0 72-73 0.00400859442645031 74-75 0.008818907738190681 76 0.0016034377705801239 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 62366.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.51399801173717 #Duplication Level Percentage of deduplicated Percentage of total 1 90.67883433254914 76.63630824487701 2 4.47749867192836 7.5682262771381845 3 2.5290278515595355 6.412147644549915 4 1.2502845867799954 4.226661963249207 5 0.6317826515898916 2.669723888015906 6 0.2675115731957198 1.3565083539107847 7 0.111937466798209 0.6622197992495912 8 0.020869697199666085 0.1411025238110509 9 0.017075206799726798 0.12987845941699003 >10 0.015177961599757152 0.1972228457813552 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0032068755411602478 0.0 2 0.0 0.0 0.0 0.0032068755411602478 0.0 3 0.0 0.0 0.0 0.0032068755411602478 0.0 4 0.0 0.0 0.0 0.0032068755411602478 0.0 5 0.0 0.0 0.0 0.0064137510823204956 0.0 6 0.0 0.0 0.0 0.0064137510823204956 0.0 7 0.0 0.0 0.0 0.0064137510823204956 0.0 8 0.0 0.0 0.0 0.0064137510823204956 0.0 9 0.0 0.0 0.0 0.0064137510823204956 0.0 10 0.0 0.0 0.0 0.0064137510823204956 0.0 11 0.0 0.0 0.0 0.009620626623480743 0.0 12 0.0 0.0 0.0 0.009620626623480743 0.0 13 0.0 0.0 0.0 0.011224064394060866 0.0 14 0.0 0.0 0.0 0.012827502164640991 0.0 15 0.0 0.0 0.0 0.012827502164640991 0.0 16 0.0 0.0 0.0 0.012827502164640991 0.0 17 0.0 0.0 0.0 0.012827502164640991 0.0 18 0.0 0.0 0.0 0.01603437770580124 0.0 19 0.0 0.0 0.0 0.019241253246961486 0.0 20 0.0 0.0 0.0 0.022448128788121732 0.0 21 0.0 0.0 0.0 0.02886187987044223 0.0 22 0.0 0.0 0.0 0.043292819805663345 0.0 23 0.0 0.0 0.0 0.04649969534682359 0.0 24 0.0 0.0 0.0 0.052913446429144084 0.0 25 0.0 0.0 0.0 0.052913446429144084 0.0 26 0.0 0.0 0.0 0.052913446429144084 0.0 27 0.0 0.0 0.0 0.06574094859378507 0.0 28 0.0 0.0 0.0 0.09941314177596768 0.0 29 0.0 0.0 0.0 0.15874033928743225 0.0 30 0.0 0.0 0.0 0.20684347240483597 0.0 31 0.0 0.0 0.0 0.2421191033575987 0.0 32 0.0 0.0 0.0 0.2613603566045602 0.0 33 0.0 0.0 0.0 0.32549786742776515 0.0 34 0.0 0.0 0.0 0.3800147516274893 0.0 35 0.0 0.0 0.0 0.5243241509797005 0.0 36 0.0 0.0 0.0 0.686271365808293 0.0 37 0.0 0.0 0.0 1.0534586152711414 0.0 38 0.0 0.0 0.0 1.6258858993682455 0.0 39 0.0 0.0 0.0 2.2416060032710132 0.0 40 0.0 0.0 0.0 2.8428951672385594 0.0 41 0.0 0.0 0.0 3.7231825032870476 0.0 42 0.0 0.0 0.0 4.366161049289677 0.0 43 0.0 0.0 0.0 5.150242119103358 0.0 44 0.0 0.0 0.0 5.924702562293557 0.0 45 0.0 0.0 0.0 6.954109611005997 0.0 46 0.0 0.0 0.0 7.784690376166501 0.0 47 0.0 0.0 0.0 8.535099252797998 0.0 48 0.0 0.0 0.0 9.429817528781708 0.0 49 0.0 0.0 0.0 10.353397684635858 0.0 50 0.0 0.0 0.0 11.131065003367219 0.0 51 0.0 0.0 0.0 11.892697944392777 0.0 52 0.0 0.0 0.0 12.620658692236153 0.0 53 0.0 0.0 0.0 13.385498508802874 0.0 54 0.0 0.0 0.0 14.025270179264343 0.0 55 0.0 0.0 0.0 14.743610300484239 0.0 56 0.0 0.0 0.0 15.518070743674437 0.0 57 0.0 0.0 0.0 16.23320398935317 0.0 58 0.0 0.0 0.0 16.860148157650002 0.0 59 0.0 0.0 0.0 17.48067857486451 0.0 60 0.0 0.0 0.0 18.15412243850816 0.0 61 0.0 0.0 0.0 18.601481576500017 0.0 62 0.0 0.0 0.0 19.127409165250295 0.0 63 0.0 0.0 0.0 19.597216432030272 0.0 64 0.0 0.0 0.0 20.07824776320431 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTCCGAC 25 2.8095837E-6 70.00001 19 CAAGCTG 15 0.0022150215 70.00001 56 TACGTTT 15 0.0022150215 70.00001 33 GTCGGGG 15 0.0022150215 70.00001 17 TGCCGCT 30 1.0084659E-7 70.00001 13 TCGCCGT 45 3.7471182E-10 62.222225 52 TCGGTGG 85 0.0 57.64706 45 CATCTGC 55 3.45608E-11 57.27273 9 ACGTTTA 25 2.3734802E-4 56.000004 34 CTTCCGA 25 2.3734802E-4 56.000004 18 GCCGTAC 25 2.3734802E-4 56.000004 54 TACGTGT 25 2.3734802E-4 56.000004 33 ATCTCCG 20 0.006921395 52.5 42 CCACTTT 20 0.006921395 52.5 13 AGCGGGA 20 0.006921395 52.5 44 CCGTATC 40 7.369763E-7 52.5 55 GTAGATA 20 0.006921395 52.5 38 CGGATCA 20 0.006921395 52.5 56 GGTGGAA 20 0.006921395 52.5 47 ACGTGTA 20 0.006921395 52.5 34 >>END_MODULE