##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779841_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 62366 Sequences flagged as poor quality 0 Sequence length 76 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.51274733027611 34.0 34.0 34.0 34.0 34.0 2 33.60302087675977 34.0 34.0 34.0 34.0 34.0 3 33.75606901196164 34.0 34.0 34.0 34.0 34.0 4 33.54920950517911 34.0 34.0 34.0 34.0 34.0 5 33.60505724272841 34.0 34.0 34.0 34.0 34.0 6 37.33133438091268 38.0 38.0 38.0 37.0 38.0 7 37.3659526023795 38.0 38.0 38.0 37.0 38.0 8 37.30862970208126 38.0 38.0 38.0 37.0 38.0 9 37.21041913863323 38.0 38.0 38.0 36.0 38.0 10-11 37.136693069941956 38.0 38.0 38.0 36.0 38.0 12-13 37.301558541513 38.0 38.0 38.0 36.5 38.0 14-15 37.33355514222493 38.0 38.0 38.0 37.0 38.0 16-17 37.12781002469295 38.0 38.0 38.0 36.0 38.0 18-19 36.93906936471795 38.0 38.0 38.0 34.5 38.0 20-21 37.03631786550364 38.0 38.0 38.0 35.5 38.0 22-23 37.10594715069108 38.0 38.0 38.0 36.0 38.0 24-25 37.18716127377097 38.0 38.0 38.0 36.0 38.0 26-27 37.02111727543854 38.0 38.0 38.0 35.5 38.0 28-29 36.44905076483981 38.0 37.0 38.0 34.0 38.0 30-31 36.58522271750633 38.0 37.0 38.0 34.5 38.0 32-33 36.774380271301666 38.0 37.0 38.0 34.5 38.0 34-35 36.75480229612289 38.0 37.0 38.0 35.0 38.0 36-37 36.631890773819066 38.0 37.0 38.0 34.5 38.0 38-39 34.69416027963955 37.0 35.0 38.0 28.5 38.0 40-41 36.11085367026905 38.0 36.5 38.0 32.5 38.0 42-43 37.02175063335792 38.0 37.5 38.0 35.5 38.0 44-45 36.766042394894654 38.0 37.0 38.0 35.0 38.0 46-47 36.9152663310137 38.0 37.5 38.0 35.5 38.0 48-49 36.46513324567873 38.0 37.0 38.0 34.0 38.0 50-51 36.51454318057916 38.0 37.0 38.0 34.0 38.0 52-53 36.439943238302924 38.0 37.0 38.0 34.0 38.0 54-55 36.47935573870378 38.0 37.0 38.0 34.0 38.0 56-57 36.32117660263606 38.0 37.0 38.0 34.0 38.0 58-59 36.31958919924318 38.0 37.0 38.0 34.0 38.0 60-61 35.80741108937562 38.0 37.0 38.0 31.5 38.0 62-63 35.771397877048386 38.0 37.0 38.0 31.5 38.0 64-65 36.367812590193374 38.0 37.0 38.0 34.0 38.0 66-67 35.97715101176924 38.0 37.0 38.0 32.5 38.0 68-69 35.79965846775487 38.0 37.0 38.0 31.0 38.0 70-71 32.76849565468364 37.0 29.5 38.0 19.5 38.0 72-73 27.32092005259276 29.0 20.0 38.0 10.5 38.0 74-75 26.444873809447458 26.0 11.0 38.0 11.0 38.0 76 26.440496424333773 27.0 11.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 1.0 22 0.0 23 9.0 24 14.0 25 47.0 26 87.0 27 184.0 28 359.0 29 617.0 30 981.0 31 1442.0 32 2255.0 33 3555.0 34 6388.0 35 14492.0 36 14106.0 37 17829.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.193134424125763 10.126724414501123 12.839268527430223 57.840872633942894 2 9.338421575858641 10.640413045569701 62.37853958887855 17.642625789693103 3 9.120354039059745 12.349677709008114 63.95471891735882 14.575249334573325 4 6.505147035243562 50.354359747298204 28.48346855658532 14.657024660872912 5 6.442612962190937 23.83349902190296 62.436263348619434 7.2876246672866625 6 12.94936343520508 63.68694480967194 15.102780361094187 8.260911394028799 7 11.825353558028413 22.90671199050765 14.820575313472084 50.44735913799185 8 10.540999903793734 63.1898791007921 10.868101208992078 15.401019786422088 9 10.242760478465831 16.48334028156367 10.924221530962383 62.34967770900811 10-11 10.86729949010679 38.51297181156399 34.632652406760094 15.987076291569124 12-13 10.895359651091942 13.141775967674697 39.840618285604336 36.12224609562903 14-15 10.61956835455216 11.937594201969022 16.921880511817335 60.52095693166149 16-17 34.55729083154282 34.999037937337654 11.743578231728828 18.700092999390694 18-19 36.00038482506494 18.90613475291024 12.703235737421032 32.39024468460379 20-21 12.216592374049963 13.60837635891351 12.148446268800308 62.026584998236224 22-23 10.722990090754578 37.90847577205529 12.404996312093127 38.963537825097006 24-25 34.66715839940992 36.966543466234796 12.381242533813307 15.985055600541976 26-27 36.608889459000096 39.69390372959625 13.259628643812333 10.437578167591315 28-29 34.04980277715422 18.65840361735561 13.241990828335954 34.04980277715422 30-31 36.54074335375044 13.61879870442228 37.87881217329955 11.961645768527724 32-33 15.694448898438251 37.45390116409582 36.77564698714043 10.076002950325497 34-35 30.923099124522977 39.6818779463169 19.073693999935863 10.321328929224256 36-37 15.205400378411312 36.49344193951833 13.73344450501876 34.5677131770516 38-39 10.054356540422667 18.441137799442004 36.80611230478145 34.69839335535388 40-41 9.959753711958438 12.483564762851554 40.113202706602955 37.44347881858705 42-43 33.881441811243306 12.147644549915018 38.022319853766476 15.948593785075202 44-45 11.740371356187666 35.23474328961293 40.92053362409005 12.104351730109354 46-47 33.62809864349165 13.105698617836643 20.622614886316263 32.64358785235545 48-49 31.883558349100472 11.216848924093256 15.93656800179585 40.96302472501042 50-51 13.244279093635242 11.290270851039946 40.11610192594493 35.349348129379884 52-53 7.925968693867078 11.32842571208622 63.40534385424685 17.340261739799846 54-55 7.582052680547981 11.698322050755557 44.226635439058036 36.492989829638425 56-57 31.844543376248346 11.49320178077247 20.998676452893754 35.663578390085426 58-59 10.137291696739323 12.86387913198287 59.54947152320005 17.449357648077758 60-61 31.693743685147467 34.561288149728156 21.087998973585876 12.656969191538497 62-63 9.294810110341288 64.05808955606878 13.137509622786759 13.509590710803183 64-65 7.304361770365619 66.77437459910199 12.075048107761384 13.846215522771008 66-67 7.55252606255012 66.90216519647153 11.623897353648758 13.921411387329591 68-69 8.247546661535502 66.67388236803285 10.680841511128216 14.397729459303443 70-71 8.84562649839236 62.843076725707 10.996095159440975 17.315201616459664 72-73 10.773449652805619 52.48167807944577 13.190179129849094 23.554693137899513 74-75 12.435756608750731 47.64795022490198 14.412969748478604 25.503323417868685 76 12.371514247686855 48.82859479482369 13.97508057920816 24.8248103782813 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.5 14 3.5 15 4.0 16 15.0 17 26.0 18 28.5 19 35.0 20 65.0 21 91.0 22 118.5 23 147.0 24 158.5 25 169.0 26 249.5 27 323.0 28 388.5 29 461.0 30 532.5 31 600.0 32 679.5 33 763.0 34 762.5 35 877.0 36 990.5 37 989.0 38 1118.0 39 1454.5 40 5451.0 41 10767.0 42 12294.0 43 11006.5 44 7831.5 45 4627.0 46 3310.0 47 2705.5 48 1780.0 49 1379.0 50 1299.0 51 1212.0 52 1029.0 53 894.0 54 855.0 55 830.0 56 768.5 57 673.0 58 614.0 59 551.5 60 474.5 61 423.5 62 387.0 63 352.0 64 255.5 65 175.5 66 133.5 67 110.0 68 101.0 69 85.0 70 65.5 71 53.0 72 40.5 73 36.5 74 46.0 75 47.0 76 35.5 77 26.0 78 19.5 79 11.0 80 8.0 81 7.5 82 8.5 83 7.0 84 5.5 85 2.5 86 1.0 87 1.0 88 2.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04168938203508322 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0024051566558701857 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.011224064394060866 52-53 0.022448128788121732 54-55 0.044896257576243465 56-57 0.05371516531443415 58-59 0.027258442099862102 60-61 0.02084469101754161 62-63 0.022448128788121732 64-65 0.009620626623480743 66-67 0.025655004329281982 68-69 0.0032068755411602478 70-71 0.012025783279350928 72-73 0.014430939935221114 74-75 0.008818907738190681 76 0.00801718885290062 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 62366.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.94461725940416 #Duplication Level Percentage of deduplicated Percentage of total 1 42.640710960643254 8.078119488182663 2 17.66398645789251 6.692749254401437 3 15.116377486246297 8.591219574768303 4 10.266610241218789 7.77988006285476 5 6.305543800253914 5.972805695410961 6 3.8679644519678376 4.3966263669306995 7 1.878967414303851 2.4917422954815125 8 0.7871349978840456 1.1929577013116122 9 0.41472704189589504 0.7071160568258346 >10 0.8717731696995344 2.8525157938620405 >50 0.0761743546339399 1.1111823750120258 >100 0.06771053745239103 2.613603566045602 >500 0.016927634363097757 1.956194080107751 >1k 0.016927634363097757 7.625950036879068 >5k 0.0 0.0 >10k+ 0.008463817181548879 37.93733765192573 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 23660 37.93733765192573 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 3088 4.951415835551423 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 1668 2.6745342013276465 No Hit TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 637 1.021389859859539 No Hit ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT 583 0.9348042202482122 RNA PCR Primer, Index 24 (95% over 23bp) CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT 321 0.5147035243562198 No Hit CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 301 0.48263476894461727 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT 289 0.4633935156976558 No Hit CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 177 0.28380848539268194 RNA PCR Primer, Index 24 (95% over 21bp) CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 159 0.2549466055222397 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAGCTCGTATGCCGT 141 0.22608472565179746 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATATCGTATGCCGT 141 0.22608472565179746 No Hit TTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 101 0.1619472148285925 No Hit CCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 97 0.155533463746272 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCG 97 0.155533463746272 No Hit CTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 96 0.1539300259756919 No Hit TATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCT 88 0.1411025238110509 RNA PCR Primer, Index 24 (95% over 22bp) TCTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 86 0.13789564826989065 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCAGT 67 0.1074303306288683 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0032068755411602478 0.0 2 0.0 0.0 0.0 0.0032068755411602478 0.0 3 0.0 0.0 0.0 0.0032068755411602478 0.0 4 0.0 0.0 0.0 0.0032068755411602478 0.0 5 0.0 0.0032068755411602478 0.0 0.0064137510823204956 0.0 6 0.0 0.0032068755411602478 0.0 0.0064137510823204956 0.0 7 0.0 0.0032068755411602478 0.0 0.0064137510823204956 0.0 8 0.0 0.0032068755411602478 0.0 0.0064137510823204956 0.0 9 0.0 0.0032068755411602478 0.0 0.0064137510823204956 0.0 10 0.0 0.0032068755411602478 0.0 0.0064137510823204956 0.0 11 0.0 0.0032068755411602478 0.0 0.012827502164640991 0.0 12 0.0 0.0032068755411602478 0.0 0.012827502164640991 0.0 13 0.0 0.0032068755411602478 0.0 0.012827502164640991 0.0 14 0.0 0.0032068755411602478 0.0 0.014430939935221114 0.0 15 0.0 0.0032068755411602478 0.0 0.014430939935221114 0.0 16 0.0 0.0032068755411602478 0.0 0.014430939935221114 0.0 17 0.0 0.0032068755411602478 0.0 0.014430939935221114 0.0 18 0.0 0.0032068755411602478 0.0 0.01603437770580124 0.0 19 0.0 0.0032068755411602478 0.0 0.02084469101754161 0.0 20 0.0 0.0032068755411602478 0.0 0.025655004329281982 0.0 21 0.0 0.0032068755411602478 0.0 0.03206875541160248 0.0 22 0.0 0.0032068755411602478 0.0 0.044896257576243465 0.0 23 0.0 0.0032068755411602478 0.0 0.051310008658563964 0.0 24 0.0 0.0032068755411602478 0.0 0.051310008658563964 0.0 25 0.0 0.0032068755411602478 0.0 0.051310008658563964 0.0 26 0.0 0.0032068755411602478 0.0 0.051310008658563964 0.0 27 0.0 0.0032068755411602478 0.0 0.0673443863643652 0.0 28 0.0 0.0032068755411602478 0.0 0.10582689285828817 0.0 29 0.0 0.0032068755411602478 0.0 0.16515409036975276 0.0 30 0.0 0.0032068755411602478 0.0 0.22127441234005707 0.0 31 0.0 0.0032068755411602478 0.0 0.25334316775165955 0.0 32 0.0 0.0032068755411602478 0.0 0.27258442099862107 0.0 33 0.0 0.0032068755411602478 0.0 0.34634255844530676 0.0 34 0.0 0.0032068755411602478 0.0 0.40085944264503093 0.0 35 0.0 0.0032068755411602478 0.0 0.5595997819324632 0.0 36 0.0 0.0032068755411602478 0.0 0.7343744989256967 0.0 37 0.0 0.0032068755411602478 0.0 1.1304236282589872 0.0 38 0.0 0.0032068755411602478 0.0 1.7285059166853733 0.0 39 0.0 0.0032068755411602478 0.0 2.3538466472116215 0.0 40 0.0 0.0032068755411602478 0.0 3.0000320687554116 0.0 41 0.0 0.0032068755411602478 0.0 3.8899400314273804 0.0 42 0.0 0.0032068755411602478 0.0 4.563383895071032 0.0 43 0.0 0.0032068755411602478 0.0 5.397171535772697 0.0 44 0.0 0.0032068755411602478 0.0 6.21332136099798 0.0 45 0.0 0.0032068755411602478 0.0 7.2892281050572425 0.0 46 0.0 0.0032068755411602478 0.0 8.195170445435012 0.0 47 0.0 0.0032068755411602478 0.0 8.982458390789853 0.0 48 0.0 0.0032068755411602478 0.0 9.912452297726325 0.0 49 0.0 0.0032068755411602478 0.0 10.88092871115672 0.0 50 0.0 0.0032068755411602478 0.0 11.693871660840843 0.0 51 0.0 0.0032068755411602478 0.0 12.495590546130904 0.0 52 0.0 0.0032068755411602478 0.0 13.242792547221242 0.0 53 0.0 0.0032068755411602478 0.0 14.012442677099703 0.0 54 0.0 0.0032068755411602478 0.0 14.62976621877305 0.0 55 0.0 0.0032068755411602478 0.0 15.348106339992945 0.0 56 0.0 0.0032068755411602478 0.0 16.128980534265466 0.0 57 0.0 0.0032068755411602478 0.0 16.850527531026522 0.0 58 0.0 0.0032068755411602478 0.0 17.47907513709393 0.0 59 0.0 0.0032068755411602478 0.0 18.099605554308436 0.0 60 0.0 0.0032068755411602478 0.0 18.78427348234615 0.0 61 0.0 0.0032068755411602478 0.0 19.250873873584965 0.0 62 0.0 0.0032068755411602478 0.0 19.797646153352787 0.0 63 0.0 0.0032068755411602478 0.0 20.270660295673924 0.0 64 0.0 0.0032068755411602478 0.0 20.7645191290126 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATACAG 20 7.841905E-5 70.05056 47 GACAGAA 15 0.0022157265 69.994385 17 TATCGTA 30 1.0090298E-7 69.994385 38 AGTGGTG 15 0.0022157265 69.994385 10 CTCTCCG 15 0.0022157265 69.994385 10 TCTGTTC 15 0.0022157265 69.994385 8 AGACGTT 15 0.0022157265 69.994385 25 ATCGTAT 45 5.456968E-12 69.994385 39 ATATCGT 30 1.0090298E-7 69.994385 37 CATATCG 30 1.0090298E-7 69.994385 36 CTCGTCT 15 0.0022157265 69.994385 39 GACTACA 15 0.0022157265 69.994385 19 CTATACA 50 1.2732926E-11 62.99495 1 AGCATAT 35 2.931847E-7 59.99519 34 TGCTTGC 30 8.29184E-6 58.328655 55 TCTTTAT 80 0.0 56.870438 1 TTGCAAA 25 2.3744212E-4 55.99551 58 CACCTCG 50 9.567884E-10 55.99551 36 AAAACTC 25 2.3744212E-4 55.99551 69 CTTTATA 90 0.0 54.440075 2 >>END_MODULE