##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779840_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 244255 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.48048555812573 34.0 23.0 34.0 12.0 34.0 2 29.204638594911057 34.0 24.0 34.0 12.0 34.0 3 28.772397699125914 34.0 23.0 34.0 11.0 34.0 4 29.022406910810425 34.0 24.0 34.0 12.0 34.0 5 29.46315530900084 34.0 31.0 34.0 11.0 34.0 6 32.004585371844996 37.0 28.0 38.0 12.0 38.0 7 32.17836277660641 37.0 31.0 38.0 12.0 38.0 8 31.600876133548955 37.0 27.0 38.0 11.0 38.0 9 32.413539129188756 37.0 31.0 38.0 12.0 38.0 10-11 31.02121962702913 36.5 25.5 38.0 11.0 38.0 12-13 31.812415303678534 37.0 27.5 38.0 11.0 38.0 14-15 30.648576282982948 36.5 25.0 38.0 11.0 38.0 16-17 31.220953511698838 37.0 26.0 38.0 11.0 38.0 18-19 31.998775869480667 37.0 31.0 38.0 11.0 38.0 20-21 30.85029170334282 36.5 25.5 38.0 11.0 38.0 22-23 31.644134204008104 37.0 28.5 38.0 11.0 38.0 24-25 31.959296636711635 37.0 29.0 38.0 11.0 38.0 26-27 30.92335673783546 37.0 25.0 38.0 11.0 38.0 28-29 32.004788028904215 37.0 29.0 38.0 11.0 38.0 30-31 32.37947636691163 38.0 31.0 38.0 11.0 38.0 32-33 32.48581809993654 38.0 31.5 38.0 11.0 38.0 34-35 32.439794477083375 38.0 31.5 38.0 11.0 38.0 36-37 31.987619496018507 37.5 29.0 38.0 11.0 38.0 38-39 31.915025280956378 37.0 29.0 38.0 11.0 38.0 40-41 31.917610693742198 37.0 29.0 38.0 11.0 38.0 42-43 32.278899101349 37.5 31.5 38.0 11.0 38.0 44-45 32.34659884137479 38.0 31.0 38.0 11.0 38.0 46-47 32.252864833882626 38.0 31.0 38.0 11.0 38.0 48-49 31.987422980082293 37.0 29.0 38.0 11.0 38.0 50-51 31.35978997359317 37.0 26.5 38.0 11.0 38.0 52-53 31.911008986509998 37.0 29.0 38.0 11.0 38.0 54-55 32.04252522978035 37.0 29.0 38.0 11.0 38.0 56-57 32.1074307588381 37.0 31.0 38.0 11.0 38.0 58-59 32.314536038156845 38.0 31.0 38.0 11.0 38.0 60-61 32.211023315797014 37.5 31.0 38.0 11.0 38.0 62-63 32.22040490471024 38.0 31.0 38.0 11.0 38.0 64-65 32.21654009129803 37.5 31.0 38.0 11.0 38.0 66-67 32.12838017645494 37.0 31.0 38.0 11.0 38.0 68-69 31.561996683793577 37.0 27.0 38.0 11.0 38.0 70-71 31.598689893758575 37.0 27.0 38.0 11.0 38.0 72-73 31.74263576999447 37.0 27.5 38.0 11.0 38.0 74-75 31.91616548279462 37.0 29.0 38.0 11.0 38.0 76 30.91681644183333 37.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 94.0 13 866.0 14 2762.0 15 4579.0 16 5923.0 17 7210.0 18 7539.0 19 6838.0 20 5609.0 21 4158.0 22 3220.0 23 2585.0 24 2510.0 25 2480.0 26 2647.0 27 3017.0 28 3528.0 29 4212.0 30 4979.0 31 6087.0 32 7818.0 33 9961.0 34 13714.0 35 20660.0 36 36356.0 37 74900.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.255143190518105 20.64727436490553 12.55204601748173 30.545536427094632 2 18.6059650774805 21.654418538003316 35.268060019242185 24.471556365273997 3 17.21684305336636 22.108452232298212 31.765163456224027 28.9095412581114 4 12.366174694479131 25.446357290536533 31.62187058606784 30.5655974289165 5 12.327690323637182 37.54764487932693 33.47771795869071 16.646946838345173 6 26.987213867815225 39.62718373463146 16.52412087664637 16.861481520906942 7 24.477044837596267 29.36123519368482 22.21817333164099 23.94354663707792 8 21.282615014882232 40.25449230504686 17.54506634568538 20.91782633438553 9 22.88861137838557 18.786005281798268 19.481237332896594 38.844146006919566 10-11 22.60291218610478 27.944171840679306 24.376508447304907 25.076407525911005 12-13 22.523592147550715 23.701664244334815 25.67235061718286 28.10239299093161 14-15 24.431174988280617 25.949474623700375 21.94318607512277 27.676164312896233 16-17 24.95240590698988 26.734983807773087 22.496141296115095 25.816468989121933 18-19 21.40283646130163 26.36091186007664 25.615767580491962 26.620484098129772 20-21 24.057235266422385 25.699576262512537 24.17801068555403 26.065177785511047 22-23 24.96489238441099 25.671957715282357 23.49712793092295 25.866021969383702 24-25 21.53619082322403 28.56268449561305 23.233243397052984 26.66788128410994 26-27 23.323057145430575 28.81324359068838 23.88947570971202 23.974223554169022 28-29 21.879778825465777 27.999336722055833 25.551759221917653 24.569125230560736 30-31 22.68519655768176 27.1090749793248 25.26058938645836 24.945139076535085 32-33 20.90847679679024 28.25960573990297 25.231213281202024 25.600704182104767 34-35 21.50500213924105 28.675451543631304 25.100360088517498 24.71918622861015 36-37 23.905058678044668 25.908015101509328 25.145159573161248 25.041766647284756 38-39 23.42760632580992 25.733558523977685 26.172884999232306 24.66595015098009 40-41 21.900357824232152 27.344690363310324 25.7524953531979 25.002456459259626 42-43 20.26845005608915 27.120947865746313 26.4521768323139 26.15842524585063 44-45 20.080246471304722 25.329839609412584 27.850438592001964 26.739475327280733 46-47 20.89884052274737 25.967868723592414 26.837271953096852 26.296018800563363 48-49 21.18261894867853 26.26645568454215 26.71230212749407 25.83862323928525 50-51 23.417809621289663 26.030296827021495 25.1482088024565 25.40368474923234 52-53 18.680200551537197 27.533457671464806 26.611976996763246 27.17436478023474 54-55 19.410232893314554 26.280340004585806 26.375741098627536 27.933686003472108 56-57 19.698108108661426 26.954282192964317 25.8899013825281 27.45770831584615 58-59 19.69216784591195 27.272094470649893 25.76609997379455 27.269637709643607 60-61 18.77979164277875 26.244492129273205 26.224221526970137 28.751494700977904 62-63 19.564429649738056 26.617778623969475 25.664584625652303 28.15320710064017 64-65 20.166825001637946 26.147177815632578 25.529876171132805 28.156121011596674 66-67 19.48260682623206 28.643557666714443 23.631784770991583 28.242050736061913 68-69 19.447338738897336 29.68972936015508 23.39915948324391 27.463772417703662 70-71 19.617652898923048 29.40559948741988 24.01736713141416 26.959380482242906 72-73 20.175359583362333 28.159891254949006 24.507556061431128 27.157193100257533 74-75 20.025959083734424 28.861055437383946 23.399002172128377 27.713983306753253 76 20.490407212400612 28.368120665230954 23.490661054838156 27.650811067530277 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 4.5 11 7.0 12 6.0 13 3.5 14 8.5 15 16.5 16 23.5 17 30.0 18 38.0 19 61.0 20 82.0 21 88.0 22 124.0 23 224.0 24 373.5 25 459.0 26 604.5 27 895.5 28 1209.5 29 1378.0 30 1575.0 31 2101.5 32 2873.5 33 3316.0 34 3874.5 35 5093.5 36 6316.0 37 6878.0 38 7785.5 39 9531.5 40 11270.0 41 12739.0 42 13308.0 43 13828.5 44 14811.5 45 15459.5 46 15645.0 47 15743.5 48 15520.0 49 14615.5 50 14033.0 51 13176.0 52 11417.5 53 9872.5 54 9229.0 55 8483.0 56 7193.0 57 6046.5 58 5444.0 59 4958.0 60 4029.5 61 3381.0 62 3175.0 63 2860.0 64 2359.5 65 1968.0 66 1609.5 67 1457.0 68 1450.5 69 1350.5 70 1182.5 71 1108.0 72 1041.5 73 893.0 74 749.5 75 688.0 76 639.5 77 530.0 78 479.5 79 490.0 80 419.5 81 334.0 82 257.5 83 196.0 84 174.0 85 151.0 86 123.0 87 96.0 88 78.5 89 59.0 90 41.0 91 31.0 92 37.0 93 28.0 94 17.5 95 15.5 96 15.0 97 14.0 98 12.5 99 10.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0024564492026775296 7 0.00736934760803259 8 0.0016376328017850196 9 0.008188164008925098 10-11 0.002251745102454402 12-13 0.0 14-15 6.141123006693824E-4 16-17 8.188164008925098E-4 18-19 0.0028658574031237847 20-21 0.0 22-23 0.0024564492026775296 24-25 0.0032752656035700393 26-27 4.094082004462549E-4 28-29 0.005527010706024442 30-31 4.094082004462549E-4 32-33 0.0 34-35 0.0038893779042394223 36-37 0.016785736218296453 38-39 0.007164643507809461 40-41 4.094082004462549E-4 42-43 4.094082004462549E-4 44-45 0.0030705615033469118 46-47 0.0028658574031237847 48-49 2.0470410022312746E-4 50-51 0.0020470410022312745 52-53 0.011668133712718265 54-55 0.009416388610263863 56-57 0.011668133712718265 58-59 0.012691654213833902 60-61 0.02415508382632904 62-63 0.009621092710486992 64-65 0.019242185420973983 66-67 0.020470410022312747 68-69 2.0470410022312746E-4 70-71 2.0470410022312746E-4 72-73 0.005731714806247569 74-75 0.010030500910933247 76 0.003684673804016295 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 244255.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.657571044355706 #Duplication Level Percentage of deduplicated Percentage of total 1 80.93975444458589 49.9054865997976 2 6.675986125543097 8.232501776536132 3 4.204766282770923 7.777670274145791 4 2.8013260914898432 6.908918500177692 5 1.7806807111993155 5.489622372904282 6 1.1149323414658132 4.1246412032146935 7 0.6433648525236052 2.7767819871340937 8 0.405969625952627 2.002488084321969 9 0.28776513693232375 1.5968609437044152 >10 1.1393472052732843 10.939849748922601 >50 0.006107182263256683 0.24517850914073414 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0016376328017850196 0.0 2 0.0 0.0 0.0 0.0016376328017850196 0.0 3 0.0 0.0 0.0 0.0016376328017850196 0.0 4 0.0 0.0 0.0 0.0024564492026775296 0.0 5 0.0 0.0 0.0 0.004503490204908804 0.0 6 0.0 0.0 0.0 0.004503490204908804 0.0 7 0.0 0.0 0.0 0.004912898405355059 0.0 8 4.094082004462549E-4 0.0 0.0 0.004912898405355059 0.0 9 4.094082004462549E-4 0.0 0.0 0.006959939407586334 0.0 10 4.094082004462549E-4 0.0 0.0 0.008597572209371353 0.0 11 4.094082004462549E-4 0.0 0.0 0.009416388610263863 0.0 12 4.094082004462549E-4 0.0 0.0 0.014329287015618922 0.0 13 4.094082004462549E-4 0.0 0.0 0.015148103416511433 0.0 14 4.094082004462549E-4 0.0 0.0 0.015148103416511433 0.0 15 4.094082004462549E-4 0.0 0.0 0.015557511616957688 0.0 16 4.094082004462549E-4 0.0 0.0 0.016376328017850196 0.0 17 4.094082004462549E-4 0.0 0.0 0.016376328017850196 0.0 18 4.094082004462549E-4 0.0 0.0 0.018013960819635216 0.0 19 4.094082004462549E-4 0.0 0.0 0.02169863462365151 0.0 20 4.094082004462549E-4 0.0 0.0 0.024564492026775298 0.0 21 4.094082004462549E-4 0.0 0.0 0.025383308427667808 0.0 22 4.094082004462549E-4 0.0 0.0 0.03398088063703916 0.0 23 4.094082004462549E-4 0.0 0.0 0.03766555444105545 0.0 24 4.094082004462549E-4 0.0 0.0 0.047491351251765575 0.0 25 4.094082004462549E-4 0.0 0.0 0.04831016765265808 0.0 26 4.094082004462549E-4 0.0 0.0 0.049538392253996845 0.0 27 4.094082004462549E-4 0.0 0.0 0.0536324742584594 0.0 28 4.094082004462549E-4 0.0 0.0 0.06755235307363207 0.0 29 4.094082004462549E-4 0.0 0.0 0.0872039466950523 0.0 30 4.094082004462549E-4 0.0 0.0 0.11299666332316637 0.0 31 4.094082004462549E-4 0.0 0.0 0.15311866696689935 0.0 32 4.094082004462549E-4 0.0 0.0 0.20675114122535873 0.0 33 4.094082004462549E-4 0.0 0.0 0.2427790628646292 0.0 34 4.094082004462549E-4 0.0 0.0 0.30296206833022865 0.0 35 4.094082004462549E-4 0.0 0.0 0.39139423962661973 0.0 36 4.094082004462549E-4 0.0 0.0 0.5662115412171705 0.0 37 4.094082004462549E-4 0.0 0.0 0.8257763403000962 0.0 38 4.094082004462549E-4 0.0 0.0 1.2233117029334097 0.0 39 4.094082004462549E-4 0.0 0.0 1.7010910728541893 0.0 40 4.094082004462549E-4 0.0 0.0 2.2779472272829624 0.0 41 4.094082004462549E-4 0.0 0.0 2.829829481484514 0.0 42 4.094082004462549E-4 0.0 0.0 3.4824261529958447 0.0 43 4.094082004462549E-4 0.0 0.0 4.12028412929111 0.0 44 4.094082004462549E-4 0.0 0.0 4.848621317884997 0.0 45 4.094082004462549E-4 0.0 0.0 5.5937442426971815 0.0 46 4.094082004462549E-4 0.0 0.0 6.36138461853391 0.0 47 4.094082004462549E-4 0.0 0.0 7.132709668174654 0.0 48 4.094082004462549E-4 0.0 0.0 7.81191787271499 0.0 49 4.094082004462549E-4 0.0 0.0 8.450185257210702 0.0 50 4.094082004462549E-4 0.0 4.094082004462549E-4 9.099097254918016 0.0 51 4.094082004462549E-4 0.0 4.094082004462549E-4 9.781990133262369 0.0 52 4.094082004462549E-4 0.0 4.094082004462549E-4 10.462017154203599 0.0 53 4.094082004462549E-4 0.0 4.094082004462549E-4 11.119526724120284 0.0 54 4.094082004462549E-4 0.0 4.094082004462549E-4 11.748377720005731 0.0 55 4.094082004462549E-4 0.0 4.094082004462549E-4 12.445190477165257 0.0 56 4.094082004462549E-4 0.0 4.094082004462549E-4 13.078544963255615 0.0 57 4.094082004462549E-4 0.0 4.094082004462549E-4 13.62551431905181 0.0 58 4.094082004462549E-4 0.0 4.094082004462549E-4 14.06071523612618 0.0 59 4.094082004462549E-4 0.0 4.094082004462549E-4 14.536856973245174 0.0 60 4.094082004462549E-4 0.0 4.094082004462549E-4 15.00194468895212 0.0 61 4.094082004462549E-4 0.0 4.094082004462549E-4 15.55833043335858 0.0 62 4.094082004462549E-4 0.0 4.094082004462549E-4 16.08401056273157 0.0 63 4.094082004462549E-4 0.0 4.094082004462549E-4 16.636711633334016 0.0 64 4.094082004462549E-4 0.0 4.094082004462549E-4 17.186546846533336 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTACGCT 15 0.0022228782 69.99938 13 TGTGCCG 20 0.006940129 52.510292 51 TCTCGGT 150 0.0 51.322372 43 GACGAAT 70 7.2759576E-12 49.99956 23 GTAGATC 225 0.0 49.767147 38 TCGGTGG 190 0.0 49.72622 45 TAGATCT 230 0.0 48.675285 39 ACGTGTA 65 1.8371793E-10 48.47104 34 AGATCTC 245 0.0 47.132793 40 GGCGGTC 60 4.9039954E-9 46.675816 47 CGAATTT 30 5.8705144E-4 46.666256 24 CTCGGTG 200 0.0 45.490284 44 GATCTCG 200 0.0 45.490284 41 ATCTCGG 170 0.0 45.284447 42 GCCGTCT 40 4.578824E-5 43.75858 54 GACGCTT 40 4.5843655E-5 43.74962 14 CGGTGGT 170 0.0 43.24377 46 CCTGACG 90 1.8189894E-12 42.75989 11 ACGAATA 75 7.512426E-10 41.99963 24 CGACGAA 320 0.0 41.553627 22 >>END_MODULE