SRR1779840_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779840_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	244255
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT	34130	13.973101881230681	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG	4257	1.7428507092997072	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC	2388	0.9776667826656568	No Hit
ATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCTT	937	0.38361548381814087	TruSeq Adapter, Index 12 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC	774	0.3168819471454013	No Hit
CTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC	393	0.1608974227753782	TruSeq Adapter, Index 12 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACTACTTGAAACCTCGTATGCCGT	353	0.144521094757528	No Hit
CTTATACACATCTCCGAGCCCACGAGACTACTTGAAAACTCGTATGCCGT	297	0.12159423553253772	No Hit
CTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG	280	0.11463429612495138	No Hit
CTTTACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC	279	0.11422488792450514	RNA PCR Primer, Index 12 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATCGT	15	0.002225356	69.97973	37
ATCGTAT	45	3.8380676E-10	62.20421	39
TCTCGTA	4800	0.0	54.01561	38
ATCTCGT	4810	0.0	53.976055	37
GCCGTCT	4955	0.0	53.841904	46
ATGCCGT	4965	0.0	53.77093	44
CCGTCTT	4965	0.0	53.73346	47
CGTATGC	4995	0.0	53.72818	41
TATGCCG	4985	0.0	53.695583	43
AATCTCG	4775	0.0	53.63892	36
TGCCGTC	4990	0.0	53.58263	45
TCGTATG	5010	0.0	53.497482	40
CGTCTTC	4980	0.0	53.431004	48
GTATGCC	5005	0.0	53.411106	42
CTCGTAT	4980	0.0	53.32793	39
TCTTCTG	5030	0.0	52.969486	50
CTGCTTG	4985	0.0	52.966858	54
CTTCTGC	5025	0.0	52.882843	51
TTGAAAT	4765	0.0	52.870316	32
GAAATCT	4785	0.0	52.795574	34