##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779839_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 176420 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.48714431470355 32.0 23.0 34.0 12.0 34.0 2 27.873336356422175 34.0 23.0 34.0 12.0 34.0 3 27.487733817027546 34.0 23.0 34.0 11.0 34.0 4 28.03961002153951 34.0 23.0 34.0 12.0 34.0 5 28.304999433170842 34.0 23.0 34.0 11.0 34.0 6 30.42529758530779 37.0 25.0 38.0 11.0 38.0 7 30.64261988436685 37.0 26.0 38.0 12.0 38.0 8 30.013858972905567 37.0 23.0 38.0 11.0 38.0 9 31.05276045799796 37.0 26.0 38.0 11.0 38.0 10-11 29.736707856252124 35.5 23.0 38.0 11.0 38.0 12-13 30.452468540981748 37.0 25.5 38.0 11.0 38.0 14-15 29.363912821675548 35.0 22.0 38.0 11.0 38.0 16-17 29.852689604353248 36.0 23.5 38.0 11.0 38.0 18-19 30.457312096134224 37.0 24.0 38.0 11.0 38.0 20-21 29.518702528058043 35.0 22.5 38.0 11.0 38.0 22-23 30.230291350187052 36.5 24.0 38.0 11.0 38.0 24-25 30.508125495975513 37.0 24.5 38.0 11.0 38.0 26-27 29.507714544836187 36.0 21.5 38.0 11.0 38.0 28-29 30.42435664890602 37.0 24.0 38.0 11.0 38.0 30-31 30.74201054302233 37.0 25.0 38.0 11.0 38.0 32-33 30.8884338510373 37.0 26.0 38.0 11.0 38.0 34-35 30.83890998752976 37.0 26.0 38.0 11.0 38.0 36-37 30.434789139553338 37.0 24.0 38.0 11.0 38.0 38-39 30.31423591429543 37.0 23.5 38.0 11.0 38.0 40-41 30.311566148962704 37.0 23.5 38.0 11.0 38.0 42-43 30.647585307788233 37.0 25.0 38.0 11.0 38.0 44-45 30.74416732796735 37.0 25.5 38.0 11.0 38.0 46-47 30.627621584854325 37.0 25.0 38.0 11.0 38.0 48-49 30.352216302006575 37.0 24.0 38.0 11.0 38.0 50-51 29.835166080943203 36.5 22.0 38.0 11.0 38.0 52-53 30.317189094207006 37.0 23.5 38.0 11.0 38.0 54-55 30.44032706042399 37.0 23.5 38.0 11.0 38.0 56-57 30.477768960435327 37.0 23.5 38.0 11.0 38.0 58-59 30.657570003400977 37.0 24.5 38.0 11.0 38.0 60-61 30.623996712390884 37.0 24.0 38.0 11.0 38.0 62-63 30.53469561274232 37.0 24.0 38.0 11.0 38.0 64-65 30.547970751615463 37.0 24.0 38.0 11.0 38.0 66-67 30.576589955787327 37.0 24.0 38.0 11.0 38.0 68-69 30.043679854891735 37.0 23.0 38.0 11.0 38.0 70-71 30.103933794354383 36.5 23.5 38.0 11.0 38.0 72-73 30.09142670898991 37.0 23.0 38.0 11.0 38.0 74-75 30.32221970298152 37.0 24.0 38.0 11.0 38.0 76 29.262135812266184 35.0 22.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 45.0 13 608.0 14 2716.0 15 5164.0 16 6829.0 17 7851.0 18 7923.0 19 6763.0 20 5329.0 21 3971.0 22 2998.0 23 2345.0 24 1939.0 25 1773.0 26 1872.0 27 1974.0 28 2282.0 29 2596.0 30 3143.0 31 3852.0 32 4884.0 33 6418.0 34 8929.0 35 13266.0 36 23396.0 37 47552.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 33.0965876884707 20.129237047953747 10.1604126516268 36.61376261194876 2 16.473755809998867 27.577372180024938 31.06280467067226 24.88606733930393 3 14.762498582927105 22.344972225371272 31.418206552545065 31.47432263915656 4 12.058723500736876 25.27547897063825 32.24974492687904 30.416052601745836 5 11.883006461852398 33.83346559347013 36.39836753202585 17.885160412651626 6 22.48190326109754 39.45344163978845 20.634533736175907 17.430121362938106 7 26.582809461994998 27.900187630023073 20.142734863472235 25.374268044509694 8 19.949890030156677 38.08867877468653 21.169761694215815 20.79166950094098 9 22.516496224575405 17.73089045599873 19.903176798712046 39.849436520713816 10-11 20.364250610768803 28.350158998282478 25.396362028602688 25.889228362346035 12-13 20.174016551411405 23.046990137172656 26.762555265842874 30.016438045573064 14-15 24.81379662169822 26.038714431470357 22.358009295998187 26.789479650833236 16-17 26.265311559412535 25.420164494753966 22.016052692737176 26.298471253096324 18-19 21.11668508913641 25.372559022758836 25.021398407164924 28.48935748093983 20-21 24.05311189207573 24.92461172202698 24.005498242829614 27.016778143067675 22-23 26.164219333225635 24.566863076866394 22.64839173206588 26.620525857842097 24-25 20.87379191111867 29.476235014029417 22.237054672221753 27.41291840263016 26-27 23.011126919436116 29.514961540423652 23.492367602129022 23.981543938011214 28-29 21.667039853521796 28.027844463276995 25.666280252935657 24.638835430265548 30-31 22.543426321920197 26.648981546824473 25.91125130725345 24.896340824001882 32-33 19.68200884253486 29.121131390998755 25.270944337376715 25.925915429089674 34-35 20.067001485142903 30.40716723162561 24.594136519777344 24.93169476345415 36-37 23.56184342561044 26.08666073281214 24.511732591034587 25.839763250542834 38-39 23.814436788385716 24.460965910540324 26.933422522795748 24.791174778278208 40-41 21.03441825664048 27.205557256062306 25.962486821072677 25.797537666224535 42-43 18.59800078789476 26.761214038130703 27.088842219822638 27.551942954151894 44-45 17.9720537384502 24.55671447196871 29.56975228161669 27.9014795079644 46-47 19.560245215158446 26.249528813914797 27.730115947204485 26.460110023722272 48-49 19.6686883573291 27.207232740052152 26.698220156444847 26.4258587461739 50-51 23.2777165271759 26.482933755820774 24.449949125785434 25.78940059121789 52-53 16.842358876968213 28.569849345937442 26.670162558993184 27.917629218101165 54-55 18.1028936172625 26.21488559030189 26.418110546439877 29.264110245995735 56-57 19.255941835910374 27.48168199662694 24.864864864864867 28.397511302597827 58-59 18.857303208360616 27.47954205959801 25.243978832019547 28.419175900021827 60-61 17.666085526782044 25.74194554294057 25.792972459639124 30.79899647063826 62-63 18.93505212496386 26.118603425111818 25.251271236883728 29.695073213040597 64-65 19.61085567530487 25.543549127770188 24.469773849546737 30.375821347378206 66-67 18.054980752768028 29.98769764554479 22.62300937133268 29.3343122303545 68-69 18.76147829044326 31.396950459131617 21.714374787439066 28.127196462986053 70-71 18.227963620595343 31.582288705549587 22.917381113658713 27.272366560196353 72-73 19.204312595124524 29.781734391075513 23.73741238624028 27.27654062755968 74-75 18.622824247680754 30.088518150047193 22.555263612889696 28.733393989382357 76 20.19782898279625 29.20386588442026 22.372247257886237 28.226057874897258 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 1.0 11 0.5 12 0.0 13 1.0 14 2.5 15 11.5 16 25.0 17 30.0 18 37.0 19 50.5 20 65.0 21 73.0 22 103.5 23 178.0 24 280.5 25 339.0 26 423.5 27 610.0 28 823.0 29 934.0 30 1055.0 31 1386.0 32 1966.5 33 2337.0 34 2669.0 35 3352.5 36 4213.0 37 4722.0 38 5200.5 39 6534.5 40 7878.0 41 8813.0 42 9260.0 43 9761.5 44 10762.5 45 11499.0 46 11736.0 47 11877.5 48 11730.0 49 10890.0 50 10339.0 51 9840.5 52 8722.0 53 7563.5 54 7025.0 55 6563.5 56 5598.5 57 4664.0 58 4233.0 59 3790.0 60 3037.5 61 2440.5 62 2153.0 63 2000.0 64 1723.0 65 1482.5 66 1228.0 67 1090.0 68 980.5 69 819.0 70 683.0 71 599.0 72 574.5 73 484.0 74 386.5 75 355.0 76 318.0 77 262.5 78 249.0 79 254.0 80 196.0 81 132.0 82 113.0 83 100.0 84 97.0 85 77.5 86 50.0 87 39.0 88 30.0 89 22.0 90 17.5 91 13.0 92 14.0 93 11.0 94 8.5 95 11.0 96 13.0 97 9.5 98 7.5 99 8.5 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.003967804103843102 7 0.005101462419226845 8 0.004534633261534973 9 0.009069266523069946 10-11 0.001700487473075615 12-13 0.0 14-15 0.0 16-17 5.668291576918716E-4 18-19 0.0028341457884593587 20-21 0.0 22-23 0.001983902051921551 24-25 0.0028341457884593587 26-27 5.668291576918716E-4 28-29 0.006518535313456524 30-31 2.834145788459358E-4 32-33 0.0 34-35 0.00340097494615123 36-37 0.017571703888448024 38-39 0.009352681101915882 40-41 0.0011336583153837433 42-43 2.834145788459358E-4 44-45 0.0056682915769187174 46-47 0.001983902051921551 48-49 0.0 50-51 0.0025507312096134226 52-53 0.012753656048067113 54-55 0.00821902278653214 56-57 0.012753656048067113 58-59 0.01218682689037524 60-61 0.024090239201904545 62-63 0.009636095680761817 64-65 0.018705362203831764 66-67 0.017571703888448024 68-69 0.0 70-71 8.502437365378075E-4 72-73 0.003684389524997166 74-75 0.008785851944224012 76 0.0028341457884593587 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 176420.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.72024340343009 #Duplication Level Percentage of deduplicated Percentage of total 1 81.66194335669961 52.0351890748602 2 6.500567707582572 8.284355131752779 3 4.076235708292003 7.79216194506359 4 2.6333730183315374 6.711966788004436 5 1.748499479219771 5.570740620332729 6 1.0081682496196502 3.8544435754424504 7 0.6830499554041772 3.046687659053937 8 0.4188005736011655 2.1348859589889924 9 0.30412844941995226 1.7441224940652418 >10 0.964236359803646 8.792406923483135 >50 9.971420259438754E-4 0.03303982895248523 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00680194989230246 0.0 2 0.0 0.0 0.0 0.00680194989230246 0.0 3 0.0 0.0 0.0 0.00680194989230246 0.0 4 0.0 0.0 0.0 0.02437365378075048 0.0 5 0.0 0.0 0.0 0.02720779956920984 0.0 6 0.0 0.0 0.0 0.02720779956920984 0.0 7 0.0 0.0 0.0 0.02720779956920984 0.0 8 0.0 0.0 0.0 0.02720779956920984 0.0 9 0.0 0.0 0.0 0.030041945357669197 0.0 10 0.0 0.0 0.0 0.0340097494615123 0.0 11 0.0 0.0 0.0 0.0340097494615123 0.0 12 0.0 0.0 0.0 0.03741072440766353 0.0 13 0.0 0.0 0.0 0.0379775535653554 0.0 14 0.0 0.0 0.0 0.03911121188073915 0.0 15 0.0 0.0 0.0 0.04081169935381476 0.0 16 0.0 0.0 0.0 0.04081169935381476 0.0 17 0.0 0.0 0.0 0.04137852851150663 0.0 18 0.0 0.0 0.0 0.046479990930733475 0.0 19 0.0 0.0 0.0 0.04988096587688471 0.0 20 0.0 0.0 0.0 0.05101462419226845 0.0 21 0.0 0.0 0.0 0.05384876998072781 0.0 22 0.0 0.0 0.0 0.0719873030268677 0.0 23 0.0 0.0 0.0 0.07312096134225145 0.0 24 0.0 0.0 0.0 0.08162339870762952 0.0 25 0.0 0.0 0.0 0.08445754449608887 0.0 26 0.0 0.0 0.0 0.08502437365378075 0.0 27 0.0 0.0 0.0 0.09579412764992631 0.0 28 0.0 0.0 0.0 0.11563314816914182 0.0 29 0.0 0.0 0.0 0.1422741185806598 0.0 30 0.0 0.0 0.0 0.1581453349960322 0.0 31 0.0 0.0 0.0 0.17968484298832332 0.0 32 0.0 0.0 0.0 0.2420360503344292 0.0 33 0.0 0.0 0.0 0.2754789706382496 0.0 34 0.0 0.0 0.0 0.3315950572497449 0.0 35 0.0 0.0 0.0 0.42852284321505496 0.0 36 0.0 0.0 0.0 0.6212447568302913 0.0 37 0.0 0.0 0.0 0.9307334769300533 0.0 38 0.0 0.0 0.0 1.333749008048974 0.0 39 0.0 0.0 0.0 1.8348259834485885 0.0 40 0.0 0.0 0.0 2.464573177644258 0.0 41 0.0 0.0 0.0 3.1045232966783813 0.0 42 0.0 0.0 0.0 3.8839133885047046 0.0 43 0.0 0.0 0.0 4.541435211427276 0.0 44 0.0 0.0 0.0 5.208026300872917 0.0 45 0.0 0.0 0.0 5.930166647772362 0.0 46 0.0 0.0 0.0 6.68971771907947 0.0 47 0.0 0.0 0.0 7.419226845028908 0.0 48 0.0 0.0 0.0 8.106223784151457 0.0 49 0.0 0.0 0.0 8.732570003400975 0.0 50 0.0 0.0 0.0 9.384990363904318 0.0 51 0.0 0.0 0.0 10.032309261988436 0.0 52 0.0 0.0 0.0 10.7601179004648 0.0 53 0.0 0.0 0.0 11.384196803083551 0.0 54 0.0 0.0 0.0 11.944790840040811 0.0 55 0.0 0.0 0.0 12.556966330348033 0.0 56 0.0 0.0 0.0 13.116993538147602 0.0 57 0.0 0.0 0.0 13.743906586554813 0.0 58 0.0 0.0 0.0 14.328874277292824 0.0 59 0.0 0.0 0.0 14.856592223103956 0.0 60 0.0 0.0 0.0 15.448928692891963 0.0 61 0.0 0.0 0.0 15.901825189887768 0.0 62 0.0 0.0 0.0 16.406303140233533 0.0 63 0.0 0.0 0.0 16.89944450742546 0.0 64 0.0 0.0 0.0 17.344972225371272 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGTAT 15 0.0022199173 70.01475 35 CCTCGGT 20 7.9129044E-5 69.994896 43 TAGATCT 200 0.0 54.230667 39 GATCTCG 165 0.0 53.02644 41 AACGTGT 20 0.006936546 52.51106 34 ATATCCG 20 0.006944332 52.496174 44 AACGATT 20 0.006944332 52.496174 22 GTCGGCC 20 0.006952124 52.481297 20 GTAGATC 205 0.0 51.215775 38 TCGGTGG 160 0.0 50.308834 45 TGCGGAC 35 2.0846172E-5 49.982185 19 AGATCTC 225 0.0 48.218708 40 CTCGGTG 140 0.0 47.49654 44 TCGGTCG 30 5.8679073E-4 46.663265 45 TCTCGGT 145 0.0 45.858727 43 ATCTCGG 155 0.0 45.157997 42 GTGTAGA 305 0.0 44.763527 36 GCGTAGA 55 1.3019962E-7 44.55484 36 CTGCGGA 40 4.580893E-5 43.74681 18 CGGTGGT 120 0.0 43.74681 46 >>END_MODULE