FastQCFastQC Report
Wed 25 May 2016
SRR1779838_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779838_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119905
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CATAGGC150.002218248370.014193
CGTGTAC150.002218248370.0141935
CCGTGTA252.8220875E-670.0141834
ATCACGG150.002221922969.9849942
CGTACCA352.9492367E-760.0121656
TACGCTG308.345192E-658.32082414
CTAGCTC252.3799921E-456.0113538
TGACGAA252.3849058E-455.987991
TCTAACG252.3849058E-455.9879911
CTTCCGA452.6720954E-854.4554818
TTAATCG200.00693137352.5106457
CACGGTT200.00693137352.5106418
TTAGATC407.4173477E-752.5106438
TTTTTGC200.00693137352.5106465
ATACTGA200.00693137352.510646
TAGATCC200.00693137352.5106439
CCGTTAA200.00693137352.5106437
GTTGCCG200.00693137352.5106417
TCACGGA200.006942821752.48874343
CGGGTTG200.006942821752.48874348
Produced by FastQC (version 0.11.5)