##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779838_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 119905 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.059455402193404 32.0 21.0 34.0 12.0 34.0 2 27.556390475793336 34.0 21.0 34.0 12.0 34.0 3 27.344756265376756 34.0 23.0 34.0 11.0 34.0 4 27.75362995704933 34.0 23.0 34.0 12.0 34.0 5 27.473408114757515 34.0 21.0 34.0 11.0 34.0 6 30.379250239773153 37.0 25.0 38.0 11.0 38.0 7 30.54780868187315 37.0 26.0 38.0 12.0 38.0 8 29.970184729577582 36.0 23.0 38.0 11.0 38.0 9 30.675317960051707 37.0 26.0 38.0 11.0 38.0 10-11 29.415082773862643 35.0 22.0 38.0 11.0 38.0 12-13 30.070234769192275 36.0 23.5 38.0 11.0 38.0 14-15 29.01734706642759 34.5 21.0 38.0 11.0 38.0 16-17 29.446553521537886 35.5 22.0 38.0 11.0 38.0 18-19 30.062595388015513 37.0 23.0 38.0 11.0 38.0 20-21 29.164947249906177 35.0 22.0 38.0 11.0 38.0 22-23 29.8420207664401 36.5 22.0 38.0 11.0 38.0 24-25 30.129123055752473 36.5 23.0 38.0 11.0 38.0 26-27 29.189062174221256 35.5 21.0 38.0 11.0 38.0 28-29 30.05925107376673 36.5 23.0 38.0 11.0 38.0 30-31 30.341578749843627 37.0 23.0 38.0 11.0 38.0 32-33 30.490842750510822 37.0 24.0 38.0 11.0 38.0 34-35 30.492097910846088 37.0 24.0 38.0 11.0 38.0 36-37 30.067645219131812 37.0 23.0 38.0 11.0 38.0 38-39 29.975013552395644 37.0 22.5 38.0 11.0 38.0 40-41 29.955627371669237 37.0 23.0 38.0 11.0 38.0 42-43 30.27914599057587 37.0 23.5 38.0 11.0 38.0 44-45 30.35858387890413 37.0 23.5 38.0 11.0 38.0 46-47 30.265297527209043 37.0 23.5 38.0 11.0 38.0 48-49 29.97807430882782 37.0 22.5 38.0 11.0 38.0 50-51 29.444243359326133 36.5 21.5 38.0 11.0 38.0 52-53 29.965839623034903 36.5 23.0 38.0 11.0 38.0 54-55 30.076106083983156 37.0 23.0 38.0 11.0 38.0 56-57 30.13971477419624 37.0 23.0 38.0 11.0 38.0 58-59 30.236291230557526 37.0 23.0 38.0 11.0 38.0 60-61 30.21104207497602 37.0 23.0 38.0 11.0 38.0 62-63 30.171047912931073 37.0 23.0 38.0 11.0 38.0 64-65 30.161636295400527 37.0 23.0 38.0 11.0 38.0 66-67 30.14836745757058 37.0 23.0 38.0 11.0 38.0 68-69 29.656415495600683 36.0 22.5 38.0 11.0 38.0 70-71 29.719978316166966 36.0 23.0 38.0 11.0 38.0 72-73 29.897010133021976 36.0 23.0 38.0 11.0 38.0 74-75 29.809123889746047 36.5 23.0 38.0 11.0 38.0 76 29.040748926233267 34.0 22.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 67.0 13 650.0 14 2226.0 15 3647.0 16 4688.0 17 5690.0 18 5691.0 19 4907.0 20 3913.0 21 2685.0 22 1942.0 23 1566.0 24 1359.0 25 1252.0 26 1293.0 27 1426.0 28 1522.0 29 1759.0 30 2176.0 31 2732.0 32 3398.0 33 4398.0 34 5893.0 35 8869.0 36 15554.0 37 30600.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.47904591134648 20.7539301947375 15.053584087402527 31.713439806513488 2 20.48621825611943 21.428630999541305 33.634127017221964 24.451023727117303 3 15.024394312163796 27.241566239939953 32.3814686626913 25.352570785204954 4 12.222175889245653 26.18739835703265 28.903715441391103 32.6867103123306 5 17.26783703765481 33.11871898586381 32.10625078186898 17.5071931946124 6 23.419764309483497 43.239952294771605 15.401616306514432 17.93866708923046 7 21.74384466537666 33.62330686595049 18.3333889370788 26.29945953159405 8 19.48957464553795 42.800667222685576 16.08090075062552 21.628857381150958 9 21.22207950356148 20.438887684120974 17.974210552654846 40.3648222596627 10-11 20.76563803169308 30.31776480400334 22.999165971643034 25.91743119266055 12-13 20.51424258472368 24.695903823459503 25.17962211593393 29.61023147588289 14-15 25.157209100613827 26.947808246597276 20.38339004536963 27.511592607419267 16-17 25.868395813352237 26.24369292356449 21.06959676410492 26.818314498978356 18-19 20.955776568461875 26.422718458747735 24.260962031650717 28.360542941139677 20-21 24.53484008173137 25.740794795880074 22.441516200325257 27.2828489220633 22-23 25.913152989353673 25.230503625923163 21.637524447354263 27.218818937368898 24-25 21.12666071741324 29.545549319032883 21.509887158786686 27.817902804767186 26-27 23.791632437752025 29.544175107482268 21.98893276676661 24.675259687999098 28-29 21.59326430272272 28.556654169985446 24.20172062202613 25.648360905265704 30-31 22.153371419040074 27.358325340894872 23.932279721446147 26.556023518618904 32-33 20.180559609691006 29.071765147408364 24.112839331137152 26.634835911763478 34-35 20.30683775297017 30.158756635710443 23.449443496899512 26.084962114419874 36-37 23.62901577742281 26.22939196656838 23.62234279923094 26.51924945677787 38-39 23.36051045728465 25.39900327376608 25.704693788185253 25.53579248076402 40-41 21.364919581833878 27.952245328573987 24.606249139940537 26.076585949651598 42-43 19.074843207899654 27.494912596744065 25.545436349079264 27.88480784627702 44-45 18.38247865921042 25.377086643397178 27.899198912422484 28.341235784969914 46-47 20.04637120314924 26.843171923737717 25.69807009057397 27.412386782539073 48-49 20.557610431635176 27.26461475590991 25.15543620131021 27.022338611144704 50-51 24.299957882797415 26.635586117169225 22.763305491499413 26.301150508533944 52-53 17.406988819057233 28.946589207742 25.118961727895638 28.527460245305132 54-55 18.883323671819937 26.87012840776869 24.368700032946457 29.877847887464913 56-57 19.890233171101965 27.376230810614686 24.051947402004327 28.68158861627902 58-59 18.966869077805953 28.199235953556652 24.1412818630722 28.692613105565197 60-61 18.064308923082056 26.214916433436635 24.821375688741142 30.899398954740164 62-63 18.795327441895378 27.16372720334636 24.193958704328498 29.846986650429763 64-65 19.807972238558207 26.66157818124184 23.73945286269014 29.79099671750981 66-67 18.51651032912216 29.993868843296813 22.07925458481225 29.41036624276878 68-69 18.731990876072206 31.7882147876018 21.022980788877817 28.456813547448178 70-71 18.138184972207046 30.183604451876285 21.685174451334184 29.993036124582478 72-73 17.75278462378909 28.44090258925183 21.96923256560703 31.83708022135205 74-75 17.715648823127093 28.292908736050176 23.38190401521344 30.60953842560929 76 17.396018381831677 29.01310247620954 22.079048548385753 31.51183059357303 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 1.0 10 1.0 11 0.5 12 0.0 13 3.5 14 5.0 15 4.5 16 12.5 17 19.0 18 19.5 19 29.5 20 36.5 21 34.0 22 51.0 23 87.5 24 135.5 25 164.0 26 249.0 27 343.0 28 488.0 29 624.0 30 654.5 31 831.0 32 1228.0 33 1479.0 34 1716.5 35 2169.5 36 2637.0 37 2889.0 38 3294.0 39 4196.5 40 5085.0 41 5708.5 42 5941.0 43 6235.5 44 6799.5 45 7309.0 46 7549.0 47 7611.5 48 7654.5 49 7358.5 50 7082.0 51 6726.0 52 6019.0 53 5465.5 54 5263.0 55 4933.5 56 4262.0 57 3567.5 58 3215.0 59 2911.0 60 2423.5 61 2081.0 62 1922.0 63 1729.0 64 1360.5 65 1101.5 66 976.0 67 934.0 68 827.5 69 631.5 70 497.0 71 452.0 72 436.5 73 385.0 74 311.0 75 273.0 76 257.5 77 216.5 78 168.5 79 146.0 80 130.5 81 117.5 82 109.0 83 98.0 84 85.0 85 58.0 86 38.0 87 32.0 88 34.0 89 27.0 90 12.5 91 8.5 92 10.0 93 9.5 94 10.0 95 8.0 96 5.0 97 5.5 98 4.5 99 2.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.001667987156498895 7 0.007505942204245028 8 0.004169967891247237 9 0.009173929360743922 10-11 0.004169967891247237 12-13 4.169967891247237E-4 14-15 8.339935782494475E-4 16-17 0.0 18-19 0.0020849839456236184 20-21 0.0 22-23 0.003752971102122514 24-25 0.001667987156498895 26-27 0.0012509903673741712 28-29 0.005420958258621409 30-31 0.0 32-33 0.0 34-35 0.003752971102122514 36-37 0.015428881197614779 38-39 0.010424919728118093 40-41 4.169967891247237E-4 42-43 8.339935782494475E-4 44-45 0.004586964680371961 46-47 0.0025019807347483425 48-49 4.169967891247237E-4 50-51 0.0012509903673741712 52-53 0.011258913306367541 54-55 0.011258913306367541 56-57 0.01209290688461699 58-59 0.014177890830240606 60-61 0.02543680413660815 62-63 0.011258913306367541 64-65 0.02210082982361036 66-67 0.02126683624536091 68-69 4.169967891247237E-4 70-71 4.169967891247237E-4 72-73 0.004586964680371961 74-75 0.009173929360743922 76 0.00333597431299779 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 119905.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 71.75513948542597 #Duplication Level Percentage of deduplicated Percentage of total 1 84.99500220832655 60.98828239022559 2 6.099630395871591 8.7535965973062 3 3.528673376879983 7.596013510695967 4 2.1618354680490013 6.2049122221758894 5 1.2238778214277413 4.39097618948334 6 0.6892303400822892 2.967349151411534 7 0.400985611009089 2.0140944914724157 8 0.24988958367233083 1.4344689545890497 9 0.1755038471373114 1.1333972728409991 >10 0.47537134754410837 4.5169092197990075 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 8.339935782494475E-4 0.0 2 0.0 0.0 0.0 8.339935782494475E-4 0.0 3 0.0 0.0 0.0 0.0025019807347483425 0.0 4 0.0 0.0 0.0 0.00333597431299779 0.0 5 0.0 0.0 0.0 0.005003961469496685 0.0 6 0.0 0.0 0.0 0.008339935782494475 0.0 7 0.0 0.0 0.0 0.008339935782494475 0.0 8 0.0 0.0 0.0 0.008339935782494475 0.0 9 0.0 0.0 0.0 0.008339935782494475 0.0 10 0.0 0.0 0.0 0.009173929360743922 0.0 11 0.0 0.0 0.0 0.009173929360743922 0.0 12 0.0 0.0 0.0 0.009173929360743922 0.0 13 0.0 0.0 0.0 0.015011884408490054 0.0 14 0.0 0.0 0.0 0.019181852299737293 0.0 15 0.0 0.0 0.0 0.022517826612735083 0.0 16 0.0 0.0 0.0 0.022517826612735083 0.0 17 0.0 0.0 0.0 0.022517826612735083 0.0 18 0.0 0.0 0.0 0.024185813769233976 0.0 19 0.0 0.0 0.0 0.024185813769233976 0.0 20 0.0 0.0 0.0 0.024185813769233976 0.0 21 0.0 0.0 0.0 0.031691755973479 0.0 22 0.0 0.0 0.0 0.060047537633960216 0.0 23 0.0 0.0 0.0 0.06421750552520746 0.0 24 0.0 0.0 0.0 0.08506734498144364 0.0 25 0.0 0.0 0.0 0.08590133855969309 0.0 26 0.0 0.0 0.0 0.08840331929444144 0.0 27 0.0 0.0 0.0 0.09924523581168425 0.0 28 0.0 0.0 0.0 0.12009507526792043 0.0 29 0.0 0.0 0.0 0.13927692756765772 0.0 30 0.0 0.0 0.0 0.16596472207164004 0.0 31 0.0 0.0 0.0 0.19265251657562238 0.0 32 0.0 0.0 0.0 0.23435219548809474 0.0 33 0.0 0.0 0.0 0.27104791293107044 0.0 34 0.0 0.0 0.0 0.32775947625203283 0.0 35 0.0 0.0 0.0 0.41032484049872814 0.0 36 0.0 0.0 0.0 0.5629456653183771 0.0 37 0.0 0.0 0.0 0.8006338351194696 0.0 38 0.0 0.0 0.0 1.1817689003794671 0.0 39 0.0 0.0 0.0 1.5570660105917185 0.0 40 0.0 0.0 0.0 1.9949126391726784 0.0 41 0.0 0.0 0.0 2.4511071264751263 0.0 42 0.0 0.0 0.0 2.991534965180768 0.0 43 0.0 0.0 0.0 3.557816604812143 0.0 44 0.0 0.0 0.0 4.023185021475335 0.0 45 0.0 0.0 0.0 4.557774905133231 0.0 46 0.0 0.0 0.0 5.130728493390601 0.0 47 0.0 0.0 0.0 5.641966556857512 0.0 48 0.0 0.0 0.0 6.1190108836161965 0.0 49 0.0 0.0 0.0 6.612735081939869 0.0 50 0.0 0.0 0.0 7.055585671990325 0.0 51 0.0 0.0 0.0 7.582669613443977 0.0 52 0.0 0.0 0.0 8.033026145698678 0.0 53 0.0 0.0 0.0 8.540928234852592 0.0 54 0.0 0.0 0.0 9.110545848796963 0.0 55 0.0 0.0 0.0 9.57091030399066 0.0 56 0.0 0.0 0.0 10.055460572953589 0.0 57 0.0 0.0 0.0 10.481631291439056 0.0 58 0.0 0.0 0.0 10.97201951544973 0.0 59 0.0 0.0 0.0 11.404862182561194 0.0 60 0.0 0.0 0.0 11.714273800091739 0.0 61 0.0 0.0 0.0 12.125432634168718 0.0 62 0.0 0.0 0.0 12.569117217797423 0.0 63 0.0 0.0 0.0 12.98111004545265 0.0 64 0.0 0.0 0.0 13.369751052916893 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATAGGC 15 0.0022182483 70.01419 3 CGTGTAC 15 0.0022182483 70.01419 35 CCGTGTA 25 2.8220875E-6 70.01418 34 ATCACGG 15 0.0022219229 69.98499 42 CGTACCA 35 2.9492367E-7 60.01216 56 TACGCTG 30 8.345192E-6 58.320824 14 CTAGCTC 25 2.3799921E-4 56.01135 38 TGACGAA 25 2.3849058E-4 55.98799 1 TCTAACG 25 2.3849058E-4 55.98799 11 CTTCCGA 45 2.6720954E-8 54.45548 18 TTAATCG 20 0.006931373 52.51064 57 CACGGTT 20 0.006931373 52.51064 18 TTAGATC 40 7.4173477E-7 52.51064 38 TTTTTGC 20 0.006931373 52.51064 65 ATACTGA 20 0.006931373 52.51064 6 TAGATCC 20 0.006931373 52.51064 39 CCGTTAA 20 0.006931373 52.51064 37 GTTGCCG 20 0.006931373 52.51064 17 TCACGGA 20 0.0069428217 52.488743 43 CGGGTTG 20 0.0069428217 52.488743 48 >>END_MODULE